Wall clock time and date at job start Wed Apr 1 2020 04:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37091 * 119.99535 * 2 1 4 4 H 1.08007 * 119.99997 * 142.19838 * 3 2 1 5 5 C 1.38951 * 120.00531 * 322.19836 * 3 2 1 6 6 N 1.31410 * 120.00166 * 160.49181 * 5 3 2 7 7 Si 1.86802 * 119.99812 * 340.48620 * 5 3 2 8 8 H 1.48503 * 109.46831 * 95.27868 * 7 5 3 9 9 H 1.48498 * 109.47142 * 215.27845 * 7 5 3 10 10 H 1.48502 * 109.47156 * 335.27967 * 7 5 3 11 11 C 1.34770 * 119.99928 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99765 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00309 * 359.97438 * 11 2 1 14 14 H 1.08994 * 110.85852 * 59.30316 * 13 11 2 15 15 C 1.54635 * 110.96646 * 295.51130 * 13 11 2 16 16 C 1.51344 * 104.16552 * 217.10824 * 15 13 11 17 17 O 1.21280 * 124.92828 * 196.25238 * 16 15 13 18 18 N 1.34426 * 110.12953 * 16.20225 * 16 15 13 19 19 C 1.39549 * 124.34797 * 180.41176 * 18 16 15 20 20 C 1.39150 * 119.90617 * 185.72120 * 19 18 16 21 21 C 1.37661 * 120.11195 * 179.76721 * 20 19 18 22 22 C 1.39803 * 119.93023 * 0.51402 * 21 20 19 23 23 C 1.43203 * 120.09071 * 179.72140 * 22 21 20 24 24 N 9.01311 * 162.05111 * 154.56960 * 13 1 2 25 25 C 1.39889 * 119.81848 * 359.74320 * 22 21 20 26 26 Cl 1.73604 * 120.05528 * 180.02562 * 25 22 21 27 27 C 1.37872 * 119.88904 * 359.97438 * 25 22 21 28 28 C 1.46757 * 111.30007 * 0.44179 * 18 16 15 29 29 H 1.08995 * 109.46898 * 265.70229 * 1 2 3 30 30 H 1.08999 * 109.46666 * 145.70856 * 1 2 3 31 31 H 1.08996 * 109.46931 * 25.71052 * 1 2 3 32 32 H 0.97006 * 120.00055 * 179.97438 * 6 5 3 33 33 H 1.08997 * 110.48439 * 335.76059 * 15 13 11 34 34 H 1.08996 * 110.48557 * 98.41189 * 15 13 11 35 35 H 1.08000 * 119.94829 * 0.02562 * 20 19 18 36 36 H 1.07998 * 120.03255 * 180.23570 * 21 20 19 37 37 H 1.07999 * 119.96920 * 179.97438 * 27 25 22 38 38 H 1.09004 * 110.24071 * 223.98062 * 28 18 16 39 39 H 1.09000 * 110.32229 * 102.02353 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0605 1.2855 0.5733 5 6 1.6744 2.2644 -0.7375 6 7 2.0790 3.4828 -0.4572 7 14 0.4593 1.9804 -2.1276 8 1 -0.9238 2.1771 -1.6240 9 1 0.7283 2.9441 -3.2249 10 1 0.6074 0.5941 -2.6390 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 1 0.7408 -2.5482 -0.8761 15 6 0.5707 -2.6408 1.3029 16 6 0.6774 -4.1172 1.6181 17 8 -0.0388 -4.7155 2.3927 18 7 1.6806 -4.6693 0.9139 19 6 2.0343 -6.0180 0.9720 20 6 3.1634 -6.4689 0.2951 21 6 3.5189 -7.7975 0.3535 22 6 2.7380 -8.6971 1.0853 23 6 3.1013 -10.0810 1.1434 24 7 3.3891 -11.1788 1.1904 25 6 1.6005 -8.2416 1.7603 26 17 0.6268 -9.3531 2.6714 27 6 1.2547 -6.9082 1.7016 28 6 2.3565 -3.6712 0.0767 29 1 -0.3633 -0.0770 1.0247 30 1 -0.3632 -0.8491 -0.5790 31 1 -0.3633 0.9259 -0.4458 32 1 1.7470 4.2347 -0.9724 33 1 1.0080 -2.0470 2.1056 34 1 -0.4697 -2.3589 1.1416 35 1 3.7642 -5.7746 -0.2736 36 1 4.3976 -8.1454 -0.1692 37 1 0.3765 -6.5553 2.2218 38 1 2.5375 -4.0749 -0.9195 39 1 3.2968 -3.3662 0.5360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448836817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:35 Heat of formation + Delta-G solvation = 10.953801 kcal Electronic energy + Delta-G solvation = -26997.474901 eV Core-core repulsion = 22932.312995 eV Total energy + Delta-G solvation = -4065.161906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.60738 -39.64548 -38.79582 -37.10928 -36.79874 -36.36796 -35.06297 -33.55365 -32.15363 -31.39594 -30.03789 -27.96069 -26.70962 -25.80474 -24.34446 -23.69029 -22.02531 -20.46628 -19.46215 -18.97671 -18.00433 -17.44228 -17.17951 -16.51049 -16.00644 -15.59556 -15.40275 -15.18863 -14.67294 -14.60332 -14.55064 -14.18723 -13.98371 -13.69052 -13.65938 -13.35992 -13.09341 -13.00612 -12.80372 -12.75401 -12.54798 -12.42265 -12.09826 -11.92734 -11.89119 -11.48521 -11.42191 -11.38695 -10.95244 -10.51485 -10.43681 -10.08238 -10.04125 -9.34986 -9.26965 -8.81386 -8.38789 -7.97020 -6.55311 -4.16806 0.18991 0.72723 1.56604 2.06273 2.36644 2.39029 2.70885 2.88771 3.07457 3.10898 3.36454 3.40196 3.52769 3.81998 3.98003 4.08960 4.26995 4.41265 4.58008 4.63897 4.76993 4.81763 4.84884 4.90049 5.19371 5.31396 5.37250 5.40200 5.46177 5.56266 5.62861 5.68430 5.75702 5.81873 5.84959 5.92991 6.09414 6.42306 6.60284 7.17946 7.33770 7.66342 8.06974 8.26863 8.73776 9.10559 9.48800 10.55974 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002359 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.681629 B =11868.088959 C =12457.019257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.459 5.459 3 C -0.320 4.320 4 H 0.108 0.892 5 C 0.060 3.940 6 N -0.859 5.859 7 Si 0.884 3.116 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.264 1.264 11 C 0.469 3.531 12 O -0.559 6.559 13 C -0.119 4.119 14 H 0.111 0.889 15 C -0.143 4.143 16 C 0.524 3.476 17 O -0.503 6.503 18 N -0.558 5.558 19 C 0.221 3.779 20 C -0.158 4.158 21 C -0.025 4.025 22 C -0.060 4.060 23 C 0.258 3.742 24 N -0.411 5.411 25 C 0.038 3.962 26 Cl -0.048 7.048 27 C -0.159 4.159 28 C 0.109 3.891 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.276 0.724 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -17.145 0.141 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.180 5.180 3 C -0.447 4.447 4 H 0.126 0.874 5 C -0.147 4.147 6 N -0.495 5.495 7 Si 0.712 3.288 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.189 1.189 11 C 0.256 3.744 12 O -0.441 6.441 13 C -0.141 4.141 14 H 0.129 0.871 15 C -0.184 4.184 16 C 0.314 3.686 17 O -0.378 6.378 18 N -0.279 5.279 19 C 0.123 3.877 20 C -0.179 4.179 21 C -0.046 4.046 22 C -0.066 4.066 23 C -0.057 4.057 24 N -0.087 5.087 25 C 0.008 3.992 26 Cl -0.019 7.019 27 C -0.179 4.179 28 C -0.012 4.012 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.193 0.807 38 H 0.113 0.887 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.460 -18.952 0.681 19.278 hybrid contribution -0.962 0.511 -0.797 1.350 sum -4.421 -18.441 -0.115 18.964 Atomic orbital electron populations 1.22155 0.83343 1.01811 1.01370 1.43602 1.04097 1.05573 1.64689 1.19061 1.10755 0.85367 1.29551 0.87438 1.25403 0.97527 0.94808 0.96973 1.69721 1.43217 0.98313 1.38230 0.86872 0.80316 0.79048 0.82593 1.20166 1.21386 1.18873 1.19574 0.87846 0.83883 0.83072 1.90589 1.13394 1.86386 1.53735 1.22272 0.97612 0.95137 0.99073 0.87062 1.22493 1.03979 0.92565 0.99322 1.21283 0.78385 0.90313 0.78621 1.90625 1.44490 1.67978 1.34729 1.46016 1.32722 1.06399 1.42796 1.17821 0.93113 0.82527 0.94211 1.20903 0.97191 0.96378 1.03378 1.20921 0.97665 0.91389 0.94637 1.15768 0.98060 0.86519 1.06224 1.25350 0.93968 0.92418 0.93991 1.81225 1.07908 1.11375 1.08151 1.20666 0.92093 0.91101 0.95346 1.98412 1.69714 1.61426 1.72330 1.21436 1.03439 0.90060 1.03005 1.22335 0.97116 0.85919 0.95866 0.92433 0.92508 0.91478 0.91343 0.86217 0.86488 0.83388 0.83450 0.80680 0.88741 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 7.66 59.85 0.46 1.37 16 2 N -0.46 -9.44 2.59 -122.19 -0.32 -9.75 16 3 C -0.32 -8.16 9.38 -14.94 -0.14 -8.30 16 4 H 0.11 3.12 7.92 -52.48 -0.42 2.71 16 5 C 0.06 1.51 5.33 -17.47 -0.09 1.42 16 6 N -0.86 -23.20 13.96 55.50 0.77 -22.43 16 7 Si 0.88 18.60 24.85 -169.99 -4.22 14.38 16 8 H -0.27 -5.36 6.70 56.52 0.38 -4.98 16 9 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 11 C 0.47 8.75 6.93 -10.99 -0.08 8.67 16 12 O -0.56 -12.51 15.40 5.54 0.09 -12.42 16 13 C -0.12 -1.47 2.57 -90.13 -0.23 -1.70 16 14 H 0.11 1.16 7.42 -51.93 -0.39 0.77 16 15 C -0.14 -1.60 5.18 -26.71 -0.14 -1.74 16 16 C 0.52 6.30 7.92 -10.83 -0.09 6.22 16 17 O -0.50 -7.14 14.79 5.56 0.08 -7.05 16 18 N -0.56 -5.99 3.13 -112.23 -0.35 -6.34 16 19 C 0.22 2.21 6.60 -83.72 -0.55 1.66 16 20 C -0.16 -1.21 9.38 -39.45 -0.37 -1.58 16 21 C -0.02 -0.18 9.75 -39.21 -0.38 -0.56 16 22 C -0.06 -0.55 5.74 -106.77 -0.61 -1.16 16 23 C 0.26 2.75 14.38 -22.48 -0.32 2.43 16 24 N -0.41 -5.18 18.54 41.83 0.78 -4.40 16 25 C 0.04 0.38 6.34 -39.10 -0.25 0.14 16 26 Cl -0.05 -0.50 28.02 -51.86 -1.45 -1.95 16 27 C -0.16 -1.69 9.04 -39.42 -0.36 -2.05 16 28 C 0.11 1.16 5.59 -3.12 -0.02 1.15 16 29 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 30 H 0.06 0.71 6.39 -51.93 -0.33 0.38 16 31 H 0.07 1.20 3.30 -51.93 -0.17 1.03 16 32 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.12 1.43 7.89 -51.93 -0.41 1.02 16 34 H 0.12 1.08 7.30 -51.93 -0.38 0.70 16 35 H 0.15 0.88 6.98 -52.49 -0.37 0.52 16 36 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.18 2.13 5.23 -52.49 -0.27 1.86 16 38 H 0.09 0.80 7.68 -51.93 -0.40 0.40 16 39 H 0.11 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -30.94 345.16 -6.07 -37.01 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.48 Total: 1.81 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -3.17 Total: 5.95 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.88 Total: -42.92 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.17 Total: -19.48 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.22 Total: 14.38 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.45 Total: -1.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.94 -6.07 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448836817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.967 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds