Wall clock time and date at job start Wed Apr 1 2020 04:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37091 * 119.99535 * 2 1 4 4 H 1.08007 * 119.99997 * 142.19838 * 3 2 1 5 5 C 1.38951 * 120.00531 * 322.19836 * 3 2 1 6 6 N 1.31410 * 120.00166 * 160.49181 * 5 3 2 7 7 Si 1.86802 * 119.99812 * 340.48620 * 5 3 2 8 8 H 1.48503 * 109.46831 * 95.27868 * 7 5 3 9 9 H 1.48498 * 109.47142 * 215.27845 * 7 5 3 10 10 H 1.48502 * 109.47156 * 335.27967 * 7 5 3 11 11 C 1.34770 * 119.99928 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99765 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00309 * 359.97438 * 11 2 1 14 14 H 1.08994 * 110.85852 * 59.30316 * 13 11 2 15 15 C 1.54635 * 110.96646 * 295.51130 * 13 11 2 16 16 C 1.51344 * 104.16552 * 217.10824 * 15 13 11 17 17 O 1.21280 * 124.92828 * 196.25238 * 16 15 13 18 18 N 1.34426 * 110.12953 * 16.20225 * 16 15 13 19 19 C 1.39549 * 124.34797 * 180.41176 * 18 16 15 20 20 C 1.39150 * 119.90617 * 185.72120 * 19 18 16 21 21 C 1.37661 * 120.11195 * 179.76721 * 20 19 18 22 22 C 1.39803 * 119.93023 * 0.51402 * 21 20 19 23 23 C 1.43203 * 120.09071 * 179.72140 * 22 21 20 24 24 N 9.01311 * 162.05111 * 154.56960 * 13 1 2 25 25 C 1.39889 * 119.81848 * 359.74320 * 22 21 20 26 26 Cl 1.73604 * 120.05528 * 180.02562 * 25 22 21 27 27 C 1.37872 * 119.88904 * 359.97438 * 25 22 21 28 28 C 1.46757 * 111.30007 * 0.44179 * 18 16 15 29 29 H 1.08995 * 109.46898 * 265.70229 * 1 2 3 30 30 H 1.08999 * 109.46666 * 145.70856 * 1 2 3 31 31 H 1.08996 * 109.46931 * 25.71052 * 1 2 3 32 32 H 0.97006 * 120.00055 * 179.97438 * 6 5 3 33 33 H 1.08997 * 110.48439 * 335.76059 * 15 13 11 34 34 H 1.08996 * 110.48557 * 98.41189 * 15 13 11 35 35 H 1.08000 * 119.94829 * 0.02562 * 20 19 18 36 36 H 1.07998 * 120.03255 * 180.23570 * 21 20 19 37 37 H 1.07999 * 119.96920 * 179.97438 * 27 25 22 38 38 H 1.09004 * 110.24071 * 223.98062 * 28 18 16 39 39 H 1.09000 * 110.32229 * 102.02353 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0605 1.2855 0.5733 5 6 1.6744 2.2644 -0.7375 6 7 2.0790 3.4828 -0.4572 7 14 0.4593 1.9804 -2.1276 8 1 -0.9238 2.1771 -1.6240 9 1 0.7283 2.9441 -3.2249 10 1 0.6074 0.5941 -2.6390 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 1 0.7408 -2.5482 -0.8761 15 6 0.5707 -2.6408 1.3029 16 6 0.6774 -4.1172 1.6181 17 8 -0.0388 -4.7155 2.3927 18 7 1.6806 -4.6693 0.9139 19 6 2.0343 -6.0180 0.9720 20 6 3.1634 -6.4689 0.2951 21 6 3.5189 -7.7975 0.3535 22 6 2.7380 -8.6971 1.0853 23 6 3.1013 -10.0810 1.1434 24 7 3.3891 -11.1788 1.1904 25 6 1.6005 -8.2416 1.7603 26 17 0.6268 -9.3531 2.6714 27 6 1.2547 -6.9082 1.7016 28 6 2.3565 -3.6712 0.0767 29 1 -0.3633 -0.0770 1.0247 30 1 -0.3632 -0.8491 -0.5790 31 1 -0.3633 0.9259 -0.4458 32 1 1.7470 4.2347 -0.9724 33 1 1.0080 -2.0470 2.1056 34 1 -0.4697 -2.3589 1.1416 35 1 3.7642 -5.7746 -0.2736 36 1 4.3976 -8.1454 -0.1692 37 1 0.3765 -6.5553 2.2218 38 1 2.5375 -4.0749 -0.9195 39 1 3.2968 -3.3662 0.5360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448836817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:35 Heat of formation + Delta-G solvation = -8.496254 kcal Electronic energy + Delta-G solvation = -26998.318319 eV Core-core repulsion = 22932.312995 eV Total energy + Delta-G solvation = -4066.005324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.50432 -40.68634 -39.95646 -37.99086 -37.64006 -37.33439 -36.66087 -34.59615 -33.84576 -32.10443 -30.91814 -28.87784 -28.15209 -27.23119 -25.28043 -24.62897 -23.02674 -21.31576 -20.35012 -20.21267 -19.07863 -18.85987 -18.38467 -17.64614 -17.31583 -16.57832 -16.39842 -16.18950 -15.82343 -15.53063 -15.41599 -15.28806 -14.97132 -14.68985 -14.58688 -14.53429 -14.36191 -14.04897 -13.95118 -13.88993 -13.75138 -13.57141 -13.34000 -12.86209 -12.67238 -12.58139 -12.42517 -12.36477 -12.20936 -12.16839 -11.73859 -11.24199 -11.03581 -10.96310 -10.34775 -10.05817 -9.66413 -9.18405 -8.45670 -6.11727 -0.56463 0.04638 0.80259 1.19933 1.27100 1.39438 1.51291 1.53444 1.55877 1.89156 1.92719 2.23071 2.60907 2.66928 2.74302 2.95774 3.11206 3.34967 3.66989 3.79033 3.83180 3.89918 4.03537 4.10937 4.19261 4.40515 4.43135 4.54479 4.63871 4.65420 4.75730 4.82213 4.90897 4.94472 4.97896 5.03510 5.17480 5.55793 5.65996 5.78172 6.09259 6.35913 6.56407 6.78272 6.97246 7.33261 7.86437 8.70913 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002359 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.681629 B =11868.088959 C =12457.019257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.477 5.477 3 C -0.331 4.331 4 H 0.046 0.954 5 C 0.005 3.995 6 N -0.916 5.916 7 Si 0.957 3.043 8 H -0.244 1.244 9 H -0.300 1.300 10 H -0.244 1.244 11 C 0.473 3.527 12 O -0.604 6.604 13 C -0.106 4.106 14 H 0.149 0.851 15 C -0.138 4.138 16 C 0.523 3.477 17 O -0.529 6.529 18 N -0.553 5.553 19 C 0.209 3.791 20 C -0.145 4.145 21 C -0.007 4.007 22 C -0.063 4.063 23 C 0.277 3.723 24 N -0.448 5.448 25 C 0.033 3.967 26 Cl -0.058 7.058 27 C -0.167 4.167 28 C 0.113 3.887 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.278 0.722 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -19.056 -1.930 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.198 5.198 3 C -0.459 4.459 4 H 0.064 0.936 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.780 3.220 8 H -0.169 1.169 9 H -0.228 1.228 10 H -0.167 1.167 11 C 0.262 3.738 12 O -0.489 6.489 13 C -0.128 4.128 14 H 0.167 0.833 15 C -0.178 4.178 16 C 0.314 3.686 17 O -0.406 6.406 18 N -0.274 5.274 19 C 0.111 3.889 20 C -0.165 4.165 21 C -0.028 4.028 22 C -0.069 4.069 23 C -0.038 4.038 24 N -0.124 5.124 25 C 0.003 3.997 26 Cl -0.029 7.029 27 C -0.188 4.188 28 C -0.008 4.008 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.163 0.837 35 H 0.190 0.810 36 H 0.198 0.802 37 H 0.177 0.823 38 H 0.145 0.855 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.047 -20.901 -1.374 21.546 hybrid contribution -0.333 1.059 -0.043 1.111 sum -5.380 -19.843 -1.416 20.608 Atomic orbital electron populations 1.22423 0.80164 1.03018 1.03763 1.43709 1.06026 1.04468 1.65600 1.18635 1.09720 0.88093 1.29450 0.93630 1.26264 1.00137 0.93944 0.99305 1.69867 1.46014 0.99549 1.39905 0.85733 0.78908 0.79444 0.77918 1.16914 1.22752 1.16684 1.20544 0.87616 0.85415 0.80264 1.90572 1.15956 1.87505 1.54819 1.22167 0.97845 0.91543 1.01239 0.83305 1.22497 1.05280 0.91896 0.98158 1.21366 0.78389 0.90478 0.78359 1.90633 1.45627 1.68453 1.35863 1.45954 1.32256 1.06686 1.42520 1.17992 0.93952 0.82036 0.94870 1.21170 0.96134 0.96882 1.02361 1.21269 0.97733 0.90634 0.93168 1.15871 0.98159 0.86092 1.06755 1.25498 0.92941 0.92457 0.92903 1.81248 1.09224 1.12432 1.09478 1.20677 0.92459 0.90850 0.95736 1.98409 1.70125 1.61668 1.72681 1.21264 1.03435 0.90424 1.03640 1.22317 0.95744 0.85481 0.97284 0.90177 0.87733 0.93000 0.91204 0.87425 0.83707 0.80988 0.80217 0.82317 0.85490 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.37 7.66 127.77 0.98 2.35 16 2 N -0.48 -19.07 2.59 -658.89 -1.70 -20.77 16 3 C -0.33 -17.47 9.38 84.04 0.79 -16.68 16 4 H 0.05 2.89 7.92 -2.91 -0.02 2.86 16 5 C 0.01 0.27 5.33 84.93 0.45 0.72 16 6 N -0.92 -51.64 13.96 21.66 0.30 -51.34 16 7 Si 0.96 37.38 24.85 68.60 1.71 39.08 16 8 H -0.24 -8.30 6.70 99.48 0.67 -7.63 16 9 H -0.30 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.24 -8.59 7.11 99.48 0.71 -7.89 16 11 C 0.47 16.92 6.93 87.66 0.61 17.53 16 12 O -0.60 -27.28 15.40 -3.08 -0.05 -27.33 16 13 C -0.11 -2.23 2.57 -10.48 -0.03 -2.25 16 14 H 0.15 2.13 7.42 -2.39 -0.02 2.11 16 15 C -0.14 -2.64 5.18 30.61 0.16 -2.48 16 16 C 0.52 11.31 7.92 87.92 0.70 12.01 16 17 O -0.53 -14.24 14.79 -3.03 -0.04 -14.29 16 18 N -0.55 -10.22 3.13 -627.57 -1.96 -12.18 16 19 C 0.21 3.59 6.60 38.32 0.25 3.84 16 20 C -0.15 -1.65 9.38 22.35 0.21 -1.44 16 21 C -0.01 -0.07 9.75 22.51 0.22 0.15 16 22 C -0.06 -1.01 5.74 -21.25 -0.12 -1.13 16 23 C 0.28 5.43 14.38 88.33 1.27 6.70 16 24 N -0.45 -10.80 18.54 19.00 0.35 -10.44 16 25 C 0.03 0.62 6.34 22.58 0.14 0.76 16 26 Cl -0.06 -1.18 28.02 -2.72 -0.08 -1.25 16 27 C -0.17 -3.31 9.04 22.37 0.20 -3.10 16 28 C 0.11 2.02 5.59 86.83 0.49 2.50 16 29 H 0.08 1.91 7.70 -2.39 -0.02 1.89 16 30 H 0.10 1.97 6.39 -2.39 -0.02 1.95 16 31 H 0.05 1.66 3.30 -2.39 -0.01 1.65 16 32 H 0.28 14.45 8.31 -92.70 -0.77 13.68 16 33 H 0.11 2.39 7.89 -2.39 -0.02 2.37 16 34 H 0.15 1.96 7.30 -2.39 -0.02 1.95 16 35 H 0.17 1.19 6.98 -2.91 -0.02 1.17 16 36 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.16 3.77 5.23 -2.91 -0.02 3.76 16 38 H 0.13 1.49 7.68 -2.38 -0.02 1.47 16 39 H 0.09 2.04 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -74.42 345.16 5.94 -68.48 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.10 Total: 10.56 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.31 Total: 19.47 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.01 Total: -94.73 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.09 Total: -41.61 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.71 Total: 39.08 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.25 kcal Total: -74.42 5.94 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448836817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.988 kcal (2) G-P(sol) polarization free energy of solvation -74.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds