Wall clock time and date at job start Wed Apr 1 2020 04:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37097 * 120.00252 * 2 1 4 4 H 1.08002 * 119.99321 * 144.06196 * 3 2 1 5 5 C 1.38947 * 120.00056 * 324.06056 * 3 2 1 6 6 N 1.31411 * 119.99751 * 171.48462 * 5 3 2 7 7 Si 1.86808 * 119.99871 * 351.48360 * 5 3 2 8 8 H 1.48497 * 109.46780 * 87.53013 * 7 5 3 9 9 H 1.48500 * 109.46650 * 207.52686 * 7 5 3 10 10 H 1.48490 * 109.46974 * 327.52929 * 7 5 3 11 11 C 1.34777 * 119.99536 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99976 * 185.09640 * 11 2 1 13 13 C 1.50700 * 120.00151 * 5.10483 * 11 2 1 14 14 H 1.09001 * 110.86056 * 310.41539 * 13 11 2 15 15 C 1.54634 * 111.00262 * 74.22467 * 13 11 2 16 16 C 1.51288 * 104.25333 * 142.71516 * 15 13 11 17 17 O 1.21282 * 124.94470 * 164.01202 * 16 15 13 18 18 N 1.34418 * 110.11578 * 344.14429 * 16 15 13 19 19 C 1.39548 * 124.34994 * 179.44038 * 18 16 15 20 20 C 1.39158 * 119.90868 * 173.40148 * 19 18 16 21 21 C 1.37652 * 120.11333 * 180.27613 * 20 19 18 22 22 C 1.39811 * 119.92872 * 359.73957 * 21 20 19 23 23 C 1.43202 * 120.08501 * 179.97438 * 22 21 20 24 24 N 9.01421 * 164.35142 * 179.39117 * 13 1 2 25 25 C 1.39880 * 119.82344 * 0.02562 * 22 21 20 26 26 Cl 1.73602 * 120.05959 * 179.97438 * 25 22 21 27 27 C 1.37876 * 119.88635 * 0.02562 * 25 22 21 28 28 C 1.46768 * 111.30090 * 359.17180 * 18 16 15 29 29 H 1.08997 * 109.47400 * 234.84087 * 1 2 3 30 30 H 1.09001 * 109.46516 * 354.84299 * 1 2 3 31 31 H 1.09003 * 109.47215 * 114.83976 * 1 2 3 32 32 H 0.97007 * 119.99816 * 179.97438 * 6 5 3 33 33 H 1.08995 * 110.48864 * 261.61195 * 15 13 11 34 34 H 1.08996 * 110.48664 * 24.12607 * 15 13 11 35 35 H 1.08001 * 119.94138 * 0.03609 * 20 19 18 36 36 H 1.07997 * 120.03214 * 179.72480 * 21 20 19 37 37 H 1.07994 * 119.97037 * 179.97438 * 27 25 22 38 38 H 1.08998 * 110.24368 * 136.27607 * 28 18 16 39 39 H 1.08997 * 110.24542 * 258.19189 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0764 1.2761 0.5490 5 6 1.6543 2.2761 -0.7063 6 7 2.2159 3.4567 -0.5735 7 14 0.1887 2.0616 -1.8445 8 1 -1.0675 2.2387 -1.0727 9 1 0.2510 3.0752 -2.9280 10 1 0.2176 0.7005 -2.4375 11 6 2.1388 -1.1673 0.0005 12 8 3.3481 -1.1694 0.0938 13 6 1.3897 -2.4698 -0.1150 14 1 0.5663 -2.5086 0.5981 15 6 0.8821 -2.6910 -1.5588 16 6 1.0431 -4.1779 -1.7865 17 8 0.5143 -4.8052 -2.6798 18 7 1.8552 -4.7033 -0.8531 19 6 2.1977 -6.0540 -0.7774 20 6 3.1531 -6.4771 0.1416 21 6 3.4982 -7.8076 0.2160 22 6 2.8836 -8.7360 -0.6296 23 6 3.2405 -10.1209 -0.5555 24 7 3.5235 -11.2195 -0.4966 25 6 1.9200 -8.3083 -1.5490 26 17 1.1535 -9.4557 -2.6024 27 6 1.5808 -6.9737 -1.6179 28 6 2.3405 -3.6728 0.0724 29 1 -0.3634 -0.5918 0.8401 30 1 -0.3632 1.0236 0.0924 31 1 -0.3634 -0.4317 -0.9326 32 1 1.8697 4.2168 -1.0668 33 1 -0.1649 -2.4004 -1.6438 34 1 1.4914 -2.1303 -2.2675 35 1 3.6275 -5.7598 0.7949 36 1 4.2431 -8.1339 0.9266 37 1 0.8373 -6.6420 -2.3274 38 1 2.2923 -4.0352 1.0993 39 1 3.3626 -3.3905 -0.1798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448836820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:39 Heat of formation + Delta-G solvation = 9.924431 kcal Electronic energy + Delta-G solvation = -27051.865404 eV Core-core repulsion = 22986.658861 eV Total energy + Delta-G solvation = -4065.206543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59653 -39.63854 -38.80859 -37.10541 -36.79510 -36.37538 -35.09605 -33.51919 -32.14644 -31.39594 -30.02781 -27.97951 -26.76893 -25.85797 -24.36472 -23.67523 -21.99888 -20.47023 -19.46063 -18.98397 -18.00787 -17.33970 -17.27712 -16.50050 -15.96274 -15.65237 -15.33435 -15.11352 -14.86573 -14.60401 -14.48109 -14.17412 -13.83417 -13.72118 -13.65850 -13.58831 -13.09127 -12.99741 -12.85337 -12.79635 -12.59544 -12.29382 -12.10722 -12.01367 -11.91813 -11.43504 -11.41887 -11.38485 -10.75228 -10.50978 -10.39909 -10.08851 -10.02023 -9.34774 -9.31549 -8.86640 -8.38143 -7.98762 -6.50633 -4.17711 0.19204 0.72892 1.56863 2.06874 2.36696 2.39244 2.71046 2.88876 3.03176 3.09034 3.32679 3.40297 3.52887 3.82302 3.97341 4.09141 4.28885 4.43963 4.58409 4.63891 4.74208 4.81033 4.84700 4.97215 5.19630 5.32440 5.35118 5.39878 5.45087 5.60397 5.62055 5.68895 5.74971 5.77451 5.84590 5.92420 6.06453 6.42650 6.60570 7.18077 7.35148 7.67103 8.05153 8.27170 8.72725 9.11347 9.46795 10.60764 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002450 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.753154 B =11425.143114 C =12266.691899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.460 5.460 3 C -0.318 4.318 4 H 0.111 0.889 5 C 0.054 3.946 6 N -0.869 5.869 7 Si 0.892 3.108 8 H -0.275 1.275 9 H -0.290 1.290 10 H -0.263 1.263 11 C 0.473 3.527 12 O -0.558 6.558 13 C -0.118 4.118 14 H 0.109 0.891 15 C -0.141 4.141 16 C 0.525 3.475 17 O -0.503 6.503 18 N -0.558 5.558 19 C 0.222 3.778 20 C -0.157 4.157 21 C -0.025 4.025 22 C -0.060 4.060 23 C 0.258 3.742 24 N -0.411 5.411 25 C 0.038 3.962 26 Cl -0.048 7.048 27 C -0.158 4.158 28 C 0.107 3.893 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.276 0.724 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -17.175 1.260 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.181 5.181 3 C -0.445 4.445 4 H 0.128 0.872 5 C -0.152 4.152 6 N -0.505 5.505 7 Si 0.720 3.280 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.188 1.188 11 C 0.259 3.741 12 O -0.440 6.440 13 C -0.140 4.140 14 H 0.127 0.873 15 C -0.182 4.182 16 C 0.316 3.684 17 O -0.378 6.378 18 N -0.279 5.279 19 C 0.124 3.876 20 C -0.178 4.178 21 C -0.046 4.046 22 C -0.066 4.066 23 C -0.057 4.057 24 N -0.087 5.087 25 C 0.008 3.992 26 Cl -0.019 7.019 27 C -0.179 4.179 28 C -0.014 4.014 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.193 0.807 38 H 0.112 0.888 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.828 -19.004 0.763 19.401 hybrid contribution -1.105 0.561 -0.674 1.411 sum -4.933 -18.443 0.089 19.092 Atomic orbital electron populations 1.22291 0.83551 1.03617 1.00517 1.43587 1.03943 1.05742 1.64809 1.19169 1.08932 0.85391 1.31001 0.87152 1.25428 0.98210 0.95125 0.96395 1.69640 1.40877 0.99622 1.40386 0.86900 0.81777 0.78562 0.80756 1.20154 1.21676 1.18792 1.19458 0.87589 0.83918 0.83105 1.90587 1.13706 1.86340 1.53336 1.22223 0.99341 0.94964 0.97496 0.87263 1.22369 1.05579 0.92280 0.97935 1.21218 0.76722 0.90552 0.79939 1.90628 1.48111 1.66643 1.32421 1.46000 1.45581 1.05705 1.30607 1.17821 0.93142 0.82468 0.94211 1.20897 0.99312 0.96503 1.01121 1.20918 0.96781 0.91142 0.95770 1.15765 1.02273 0.86372 1.02160 1.25357 0.93918 0.92418 0.94033 1.81233 1.08299 1.11324 1.07811 1.20662 0.94739 0.90831 0.92958 1.98412 1.80012 1.59011 1.64448 1.21425 1.03878 0.89721 1.02894 1.22374 1.00537 0.85006 0.93489 0.92338 0.89845 0.92994 0.91335 0.86672 0.86252 0.83395 0.83444 0.80734 0.88790 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 7.26 59.85 0.43 1.14 16 2 N -0.46 -9.45 2.71 -122.19 -0.33 -9.78 16 3 C -0.32 -8.10 9.54 -14.93 -0.14 -8.24 16 4 H 0.11 3.22 7.83 -52.49 -0.41 2.81 16 5 C 0.05 1.37 5.37 -17.47 -0.09 1.28 16 6 N -0.87 -23.68 13.96 55.50 0.77 -22.91 16 7 Si 0.89 18.51 24.25 -169.99 -4.12 14.38 16 8 H -0.27 -5.26 6.58 56.52 0.37 -4.89 16 9 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.26 -5.09 6.31 56.52 0.36 -4.74 16 11 C 0.47 8.79 6.84 -10.99 -0.08 8.72 16 12 O -0.56 -12.46 15.32 5.55 0.09 -12.38 16 13 C -0.12 -1.47 2.69 -90.14 -0.24 -1.71 16 14 H 0.11 1.08 7.29 -51.93 -0.38 0.70 16 15 C -0.14 -1.71 5.71 -26.74 -0.15 -1.86 16 16 C 0.53 6.60 7.92 -10.86 -0.09 6.51 16 17 O -0.50 -7.39 14.80 5.56 0.08 -7.31 16 18 N -0.56 -6.10 3.13 -112.25 -0.35 -6.45 16 19 C 0.22 2.23 6.59 -83.71 -0.55 1.68 16 20 C -0.16 -1.20 9.38 -39.45 -0.37 -1.57 16 21 C -0.02 -0.18 9.75 -39.21 -0.38 -0.56 16 22 C -0.06 -0.55 5.74 -106.77 -0.61 -1.17 16 23 C 0.26 2.75 14.38 -22.47 -0.32 2.43 16 24 N -0.41 -5.18 18.54 41.84 0.78 -4.41 16 25 C 0.04 0.39 6.34 -39.10 -0.25 0.14 16 26 Cl -0.05 -0.51 28.02 -51.86 -1.45 -1.96 16 27 C -0.16 -1.71 9.04 -39.42 -0.36 -2.07 16 28 C 0.11 1.14 5.65 -3.12 -0.02 1.13 16 29 H 0.06 0.73 7.46 -51.93 -0.39 0.34 16 30 H 0.08 1.47 4.51 -51.93 -0.23 1.24 16 31 H 0.05 0.74 5.26 -51.93 -0.27 0.47 16 32 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.12 1.19 7.29 -51.93 -0.38 0.81 16 34 H 0.12 1.61 7.89 -51.93 -0.41 1.20 16 35 H 0.15 0.87 7.00 -52.49 -0.37 0.50 16 36 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.18 2.16 5.25 -52.49 -0.28 1.89 16 38 H 0.09 0.75 7.70 -51.93 -0.40 0.35 16 39 H 0.11 1.36 6.89 -51.93 -0.36 1.00 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -30.96 343.65 -6.09 -37.05 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.51 Total: 2.74 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.22 Total: 5.85 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.87 Total: -43.54 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.17 Total: -19.69 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.12 Total: 14.38 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.96 -6.09 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448836820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.971 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds