Wall clock time and date at job start Wed Apr 1 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37097 * 120.00252 * 2 1 4 4 H 1.08002 * 119.99321 * 144.06196 * 3 2 1 5 5 C 1.38947 * 120.00056 * 324.06056 * 3 2 1 6 6 N 1.31411 * 119.99751 * 171.48462 * 5 3 2 7 7 Si 1.86808 * 119.99871 * 351.48360 * 5 3 2 8 8 H 1.48497 * 109.46780 * 87.53013 * 7 5 3 9 9 H 1.48500 * 109.46650 * 207.52686 * 7 5 3 10 10 H 1.48490 * 109.46974 * 327.52929 * 7 5 3 11 11 C 1.34777 * 119.99536 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99976 * 185.09640 * 11 2 1 13 13 C 1.50700 * 120.00151 * 5.10483 * 11 2 1 14 14 H 1.09001 * 110.86056 * 310.41539 * 13 11 2 15 15 C 1.54634 * 111.00262 * 74.22467 * 13 11 2 16 16 C 1.51288 * 104.25333 * 142.71516 * 15 13 11 17 17 O 1.21282 * 124.94470 * 164.01202 * 16 15 13 18 18 N 1.34418 * 110.11578 * 344.14429 * 16 15 13 19 19 C 1.39548 * 124.34994 * 179.44038 * 18 16 15 20 20 C 1.39158 * 119.90868 * 173.40148 * 19 18 16 21 21 C 1.37652 * 120.11333 * 180.27613 * 20 19 18 22 22 C 1.39811 * 119.92872 * 359.73957 * 21 20 19 23 23 C 1.43202 * 120.08501 * 179.97438 * 22 21 20 24 24 N 9.01421 * 164.35142 * 179.39117 * 13 1 2 25 25 C 1.39880 * 119.82344 * 0.02562 * 22 21 20 26 26 Cl 1.73602 * 120.05959 * 179.97438 * 25 22 21 27 27 C 1.37876 * 119.88635 * 0.02562 * 25 22 21 28 28 C 1.46768 * 111.30090 * 359.17180 * 18 16 15 29 29 H 1.08997 * 109.47400 * 234.84087 * 1 2 3 30 30 H 1.09001 * 109.46516 * 354.84299 * 1 2 3 31 31 H 1.09003 * 109.47215 * 114.83976 * 1 2 3 32 32 H 0.97007 * 119.99816 * 179.97438 * 6 5 3 33 33 H 1.08995 * 110.48864 * 261.61195 * 15 13 11 34 34 H 1.08996 * 110.48664 * 24.12607 * 15 13 11 35 35 H 1.08001 * 119.94138 * 0.03609 * 20 19 18 36 36 H 1.07997 * 120.03214 * 179.72480 * 21 20 19 37 37 H 1.07994 * 119.97037 * 179.97438 * 27 25 22 38 38 H 1.08998 * 110.24368 * 136.27607 * 28 18 16 39 39 H 1.08997 * 110.24542 * 258.19189 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0764 1.2761 0.5490 5 6 1.6543 2.2761 -0.7063 6 7 2.2159 3.4567 -0.5735 7 14 0.1887 2.0616 -1.8445 8 1 -1.0675 2.2387 -1.0727 9 1 0.2510 3.0752 -2.9280 10 1 0.2176 0.7005 -2.4375 11 6 2.1388 -1.1673 0.0005 12 8 3.3481 -1.1694 0.0938 13 6 1.3897 -2.4698 -0.1150 14 1 0.5663 -2.5086 0.5981 15 6 0.8821 -2.6910 -1.5588 16 6 1.0431 -4.1779 -1.7865 17 8 0.5143 -4.8052 -2.6798 18 7 1.8552 -4.7033 -0.8531 19 6 2.1977 -6.0540 -0.7774 20 6 3.1531 -6.4771 0.1416 21 6 3.4982 -7.8076 0.2160 22 6 2.8836 -8.7360 -0.6296 23 6 3.2405 -10.1209 -0.5555 24 7 3.5235 -11.2195 -0.4966 25 6 1.9200 -8.3083 -1.5490 26 17 1.1535 -9.4557 -2.6024 27 6 1.5808 -6.9737 -1.6179 28 6 2.3405 -3.6728 0.0724 29 1 -0.3634 -0.5918 0.8401 30 1 -0.3632 1.0236 0.0924 31 1 -0.3634 -0.4317 -0.9326 32 1 1.8697 4.2168 -1.0668 33 1 -0.1649 -2.4004 -1.6438 34 1 1.4914 -2.1303 -2.2675 35 1 3.6275 -5.7598 0.7949 36 1 4.2431 -8.1339 0.9266 37 1 0.8373 -6.6420 -2.3274 38 1 2.2923 -4.0352 1.0993 39 1 3.3626 -3.3905 -0.1798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448836820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:38 Heat of formation + Delta-G solvation = -9.948821 kcal Electronic energy + Delta-G solvation = -27052.727173 eV Core-core repulsion = 22986.658861 eV Total energy + Delta-G solvation = -4066.068312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.50799 -40.69087 -39.97414 -38.00049 -37.63983 -37.35362 -36.68314 -34.55434 -33.87034 -32.10610 -30.91084 -28.92196 -28.20173 -27.30492 -25.29687 -24.61887 -23.01407 -21.33600 -20.35731 -20.21264 -19.06069 -18.85757 -18.49485 -17.47067 -17.37566 -16.58394 -16.46553 -16.10929 -15.94921 -15.46764 -15.39734 -15.23504 -14.96160 -14.87079 -14.62854 -14.50279 -14.43477 -14.03046 -13.94905 -13.88319 -13.72441 -13.62262 -13.47319 -12.89491 -12.66453 -12.50096 -12.41008 -12.28313 -12.20612 -12.09241 -11.69146 -11.23726 -11.12999 -10.96010 -10.38711 -10.05809 -9.67525 -9.18655 -8.41951 -6.13838 -0.56692 0.04617 0.80197 1.18117 1.27869 1.38834 1.49395 1.53212 1.54838 1.86946 1.91319 2.23944 2.58868 2.66702 2.74272 2.98612 3.11050 3.35949 3.65883 3.79638 3.82803 3.89738 4.03435 4.10958 4.17373 4.40327 4.41623 4.49305 4.58274 4.70517 4.73508 4.79050 4.87656 4.95173 4.98919 5.03403 5.17498 5.56329 5.65431 5.77130 6.08099 6.36000 6.55353 6.76571 6.95507 7.32553 7.84420 8.74313 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002450 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.753154 B =11425.143114 C =12266.691899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.478 5.478 3 C -0.325 4.325 4 H 0.049 0.951 5 C -0.003 4.003 6 N -0.927 5.927 7 Si 0.960 3.040 8 H -0.241 1.241 9 H -0.306 1.306 10 H -0.236 1.236 11 C 0.476 3.524 12 O -0.604 6.604 13 C -0.104 4.104 14 H 0.152 0.848 15 C -0.140 4.140 16 C 0.525 3.475 17 O -0.529 6.529 18 N -0.552 5.552 19 C 0.209 3.791 20 C -0.144 4.144 21 C -0.007 4.007 22 C -0.063 4.063 23 C 0.277 3.723 24 N -0.448 5.448 25 C 0.033 3.967 26 Cl -0.058 7.058 27 C -0.167 4.167 28 C 0.111 3.889 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.277 0.723 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.158 0.842 38 H 0.131 0.869 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -19.153 2.005 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.200 5.200 3 C -0.454 4.454 4 H 0.067 0.933 5 C -0.203 4.203 6 N -0.566 5.566 7 Si 0.783 3.217 8 H -0.165 1.165 9 H -0.234 1.234 10 H -0.159 1.159 11 C 0.265 3.735 12 O -0.488 6.488 13 C -0.126 4.126 14 H 0.169 0.831 15 C -0.180 4.180 16 C 0.316 3.684 17 O -0.406 6.406 18 N -0.273 5.273 19 C 0.111 3.889 20 C -0.164 4.164 21 C -0.028 4.028 22 C -0.068 4.068 23 C -0.038 4.038 24 N -0.124 5.124 25 C 0.003 3.997 26 Cl -0.029 7.029 27 C -0.188 4.188 28 C -0.010 4.010 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.191 0.809 36 H 0.198 0.802 37 H 0.176 0.824 38 H 0.148 0.852 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.862 -21.028 1.542 21.884 hybrid contribution -0.318 1.115 -0.825 1.423 sum -6.180 -19.913 0.717 20.862 Atomic orbital electron populations 1.22545 0.80268 1.03940 1.03984 1.43687 1.05954 1.04554 1.65774 1.18745 1.07785 0.88100 1.30741 0.93343 1.26339 1.01943 0.94184 0.97844 1.69811 1.43671 1.00867 1.42247 0.85838 0.78730 0.79260 0.77879 1.16525 1.23394 1.15918 1.20441 0.87370 0.85426 0.80263 1.90571 1.16318 1.87461 1.54459 1.22137 1.00016 0.91428 0.98996 0.83066 1.22385 1.06827 0.91848 0.96953 1.21248 0.76728 0.90592 0.79834 1.90635 1.49370 1.67102 1.33495 1.45928 1.45095 1.06069 1.30218 1.17991 0.94015 0.81876 0.94971 1.21174 0.97944 0.97103 1.00206 1.21275 0.96183 0.90336 0.94984 1.15872 1.02399 0.85988 1.02572 1.25504 0.92896 0.92458 0.92944 1.81256 1.09643 1.12368 1.09110 1.20672 0.95229 0.90538 0.93293 1.98409 1.80311 1.59280 1.64910 1.21249 1.04168 0.90128 1.03219 1.22375 0.98971 0.84448 0.95221 0.87827 0.91353 0.90186 0.91346 0.84090 0.87952 0.80886 0.80153 0.82431 0.85151 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 7.26 127.77 0.93 1.89 16 2 N -0.48 -19.03 2.71 -658.88 -1.78 -20.81 16 3 C -0.33 -17.19 9.54 84.04 0.80 -16.39 16 4 H 0.05 3.07 7.83 -2.91 -0.02 3.05 16 5 C 0.00 -0.15 5.37 84.93 0.46 0.31 16 6 N -0.93 -53.09 13.96 21.66 0.30 -52.78 16 7 Si 0.96 37.20 24.25 68.60 1.66 38.86 16 8 H -0.24 -8.01 6.58 99.48 0.65 -7.35 16 9 H -0.31 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.24 -7.99 6.31 99.48 0.63 -7.36 16 11 C 0.48 17.01 6.84 87.66 0.60 17.61 16 12 O -0.60 -27.33 15.32 -3.05 -0.05 -27.37 16 13 C -0.10 -2.18 2.69 -10.48 -0.03 -2.21 16 14 H 0.15 2.01 7.29 -2.39 -0.02 1.99 16 15 C -0.14 -2.89 5.71 30.59 0.17 -2.72 16 16 C 0.53 11.81 7.92 87.90 0.70 12.51 16 17 O -0.53 -14.70 14.80 -3.04 -0.04 -14.75 16 18 N -0.55 -10.34 3.13 -627.63 -1.96 -12.30 16 19 C 0.21 3.59 6.59 38.32 0.25 3.84 16 20 C -0.14 -1.60 9.38 22.35 0.21 -1.39 16 21 C -0.01 -0.07 9.75 22.51 0.22 0.15 16 22 C -0.06 -1.00 5.74 -21.25 -0.12 -1.12 16 23 C 0.28 5.41 14.38 88.33 1.27 6.68 16 24 N -0.45 -10.77 18.54 19.00 0.35 -10.42 16 25 C 0.03 0.62 6.34 22.58 0.14 0.76 16 26 Cl -0.06 -1.19 28.02 -2.72 -0.08 -1.26 16 27 C -0.17 -3.33 9.04 22.37 0.20 -3.13 16 28 C 0.11 1.96 5.65 86.83 0.49 2.45 16 29 H 0.10 1.98 7.46 -2.39 -0.02 1.96 16 30 H 0.07 2.16 4.51 -2.39 -0.01 2.15 16 31 H 0.08 1.81 5.26 -2.39 -0.01 1.79 16 32 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 33 H 0.14 2.18 7.29 -2.39 -0.02 2.17 16 34 H 0.10 2.53 7.89 -2.39 -0.02 2.52 16 35 H 0.17 1.12 7.00 -2.91 -0.02 1.10 16 36 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.16 3.79 5.25 -2.91 -0.02 3.77 16 38 H 0.13 1.40 7.70 -2.39 -0.02 1.38 16 39 H 0.09 2.06 6.89 -2.39 -0.02 2.04 16 Total: -1.00 -75.37 343.65 5.70 -69.67 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.01 Total: 11.93 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.29 Total: 19.23 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.09 Total: -96.31 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.09 Total: -42.12 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.66 Total: 38.86 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -75.37 5.70 -69.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448836820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.721 kcal (2) G-P(sol) polarization free energy of solvation -75.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds