Wall clock time and date at job start Wed Apr 1 2020 04:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42909 * 114.00033 * 2 1 4 4 C 1.52997 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46834 * 185.36806 * 4 3 2 6 6 C 1.52999 * 109.47497 * 305.36096 * 4 3 2 7 7 N 1.46504 * 109.47322 * 65.36807 * 4 3 2 8 8 C 1.46500 * 119.99602 * 297.60129 * 7 4 3 9 9 S 1.65597 * 119.99850 * 117.59839 * 7 4 3 10 10 O 1.42104 * 106.39890 * 162.42124 * 9 7 4 11 11 O 1.42099 * 106.40519 * 29.50279 * 9 7 4 12 12 C 1.76200 * 107.21853 * 275.95639 * 9 7 4 13 13 C 1.38638 * 119.75326 * 113.91683 * 12 9 7 14 14 C 1.37607 * 120.25980 * 180.27211 * 13 12 9 15 15 C 1.40732 * 119.77245 * 0.02562 * 14 13 12 16 16 C 1.41400 * 120.23563 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00327 * 26.81320 * 16 15 14 18 18 C 1.39946 * 119.99480 * 206.81052 * 16 15 14 19 19 N 1.30827 * 120.00581 * 14.91611 * 18 16 15 20 20 Si 1.86809 * 119.99623 * 194.91460 * 18 16 15 21 21 H 1.48496 * 109.47085 * 59.99870 * 20 18 16 22 22 H 1.48493 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46920 * 300.00221 * 20 18 16 24 24 C 1.40682 * 119.52706 * 359.97438 * 15 14 13 25 25 C 1.37757 * 119.73145 * 359.97438 * 24 15 14 26 26 Cl 1.73599 * 119.89002 * 179.97438 * 25 24 15 27 27 H 1.09005 * 109.46595 * 299.99453 * 1 2 3 28 28 H 1.08994 * 109.47545 * 59.99386 * 1 2 3 29 29 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46741 * 60.00685 * 3 2 1 31 31 H 1.08997 * 109.46871 * 300.00273 * 3 2 1 32 32 H 1.08996 * 109.46964 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47232 * 300.00838 * 6 4 3 34 34 H 1.09004 * 109.46499 * 60.00504 * 6 4 3 35 35 H 1.09008 * 109.46525 * 204.91045 * 8 7 4 36 36 H 1.08998 * 109.46890 * 324.90236 * 8 7 4 37 37 H 1.08996 * 109.47172 * 84.91267 * 8 7 4 38 38 H 1.08001 * 119.86877 * 0.25766 * 13 12 9 39 39 H 1.08000 * 120.10956 * 179.97438 * 14 13 12 40 40 H 0.96991 * 120.00025 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.13341 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1759 0.0955 6 6 3.9784 0.3119 1.1754 7 7 3.9763 0.5723 -1.2565 8 6 3.5571 -0.7903 -1.5937 9 16 4.9483 1.4206 -2.2947 10 8 5.5283 0.4652 -3.1722 11 8 5.7172 2.3057 -1.4918 12 6 3.8979 2.4316 -3.2841 13 6 3.9608 3.8115 -3.1661 14 6 3.1413 4.6109 -3.9296 15 6 2.2361 4.0232 -4.8328 16 6 1.3899 4.8352 -5.6226 17 1 1.6907 5.8404 -5.8783 18 6 0.1624 4.3363 -6.0730 19 7 -0.3385 3.2519 -5.5393 20 14 -0.7610 5.2188 -7.4361 21 1 0.0806 5.2583 -8.6589 22 1 -2.0244 4.4948 -7.7273 23 1 -1.0735 6.6051 -7.0053 24 6 2.1801 2.6219 -4.9451 25 6 3.0104 1.8408 -4.1718 26 17 2.9442 0.1113 -4.3066 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 5.0650 0.2254 1.1746 33 1 3.6504 0.7674 2.1097 34 1 3.5354 -0.6794 1.0792 35 1 4.2814 -1.2347 -2.2765 36 1 3.5004 -1.3885 -0.6844 37 1 2.5778 -0.7614 -2.0714 38 1 4.6555 4.2609 -2.4719 39 1 3.1920 5.6856 -3.8354 40 1 -1.1894 2.9064 -5.8512 41 1 1.4894 2.1606 -5.6354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451077091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:48 Heat of formation + Delta-G solvation = -109.453232 kcal Electronic energy + Delta-G solvation = -27682.419156 eV Core-core repulsion = 23715.187209 eV Total energy + Delta-G solvation = -3967.231947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.37376 -37.86070 -36.57056 -35.91018 -35.56599 -35.08803 -34.09587 -30.99396 -30.32634 -29.47303 -27.21447 -26.31833 -25.97541 -25.01383 -21.81060 -21.33109 -20.75587 -18.38242 -17.84403 -17.47399 -16.67668 -16.00855 -15.88455 -15.64874 -15.40620 -14.87473 -14.54118 -14.24192 -13.71176 -13.60463 -13.35239 -13.06354 -12.75032 -12.58294 -12.48384 -12.29853 -12.15947 -12.11897 -11.66301 -11.59716 -11.47823 -11.30480 -11.27393 -11.17488 -11.08173 -10.87376 -10.75357 -10.57570 -10.45539 -10.21942 -10.07599 -9.62997 -9.52385 -9.45443 -8.55669 -8.08499 -7.71247 -7.25039 -4.96137 1.20665 2.03911 2.63703 2.81249 2.83762 2.87112 3.01890 3.57565 3.59239 3.94508 4.09280 4.50366 4.92116 5.04083 5.19797 5.20205 5.33952 5.45792 5.50095 5.54672 5.60628 5.78030 5.83478 5.92122 5.92915 6.03499 6.08020 6.32920 6.36582 6.42799 6.54125 6.58597 6.65820 6.79102 6.98661 7.06245 7.15801 7.30209 7.33643 7.56237 7.75233 8.07092 8.33335 8.39517 9.65302 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.004500 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.775605 B = 6220.517344 C = 6910.390400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.049 3.951 4 C 0.154 3.846 5 H 0.107 0.893 6 C -0.154 4.154 7 N -0.992 5.992 8 C 0.096 3.904 9 S 2.693 3.307 10 O -0.966 6.966 11 O -0.986 6.986 12 C -0.791 4.791 13 C 0.007 3.993 14 C -0.235 4.235 15 C 0.144 3.856 16 C -0.427 4.427 17 H 0.092 0.908 18 C 0.070 3.930 19 N -0.764 5.764 20 Si 0.920 3.080 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.167 4.167 25 C 0.077 3.923 26 Cl -0.098 7.098 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.292 0.708 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -3.956 7.867 8.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.029 4.029 4 C 0.047 3.953 5 H 0.125 0.875 6 C -0.212 4.212 7 N -0.828 5.828 8 C -0.049 4.049 9 S 2.790 3.210 10 O -0.957 6.957 11 O -0.976 6.976 12 C -0.885 4.885 13 C -0.013 4.013 14 C -0.256 4.256 15 C 0.140 3.860 16 C -0.454 4.454 17 H 0.110 0.890 18 C -0.153 4.153 19 N -0.386 5.386 20 Si 0.743 3.257 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.188 4.188 25 C 0.048 3.952 26 Cl -0.069 7.069 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.580 -4.558 7.836 9.084 hybrid contribution -1.632 0.778 -0.847 1.996 sum -2.212 -3.780 6.989 8.248 Atomic orbital electron populations 1.22695 0.81646 1.02238 0.99959 1.87875 1.19060 1.27529 1.95372 1.22994 0.93835 0.85185 1.00888 1.20864 0.92287 0.97852 0.84257 0.87535 1.22005 1.01403 1.01180 0.96652 1.57457 1.69263 1.25059 1.31069 1.21582 1.00792 0.81569 1.00920 1.01410 0.73739 0.72907 0.72923 1.93522 1.75475 1.61485 1.65201 1.93458 1.68131 1.66465 1.69578 1.29221 1.27219 1.07219 1.24856 1.20204 0.94798 0.90668 0.95610 1.21134 1.03860 0.98278 1.02332 1.17721 0.89074 0.91442 0.87813 1.19928 1.00191 1.00748 1.24558 0.89020 1.26166 0.97941 0.94727 0.96416 1.69771 1.17062 1.18003 1.33758 0.86133 0.78613 0.80217 0.80708 1.18227 1.19789 1.18456 1.21273 1.01292 0.93505 1.02695 1.20046 0.96310 0.81758 0.97049 1.98318 1.97746 1.13601 1.97220 0.94638 0.93798 0.90076 0.92856 0.92002 0.92344 0.91990 0.91137 0.90851 0.91489 0.92093 0.86555 0.87563 0.89673 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.25 7.72 -35.23 -0.27 -5.52 16 3 C 0.05 0.69 5.71 37.16 0.21 0.90 16 4 C 0.15 2.24 3.15 -67.93 -0.21 2.03 16 5 H 0.11 1.55 7.04 -51.93 -0.37 1.18 16 6 C -0.15 -1.86 8.91 37.16 0.33 -1.53 16 7 N -0.99 -16.74 3.06 -114.61 -0.35 -17.09 16 8 C 0.10 1.52 7.20 59.85 0.43 1.95 16 9 S 2.69 54.34 5.10 -107.50 -0.55 53.79 16 10 O -0.97 -21.34 14.85 -57.17 -0.85 -22.19 16 11 O -0.99 -20.76 15.68 -57.17 -0.90 -21.66 16 12 C -0.79 -17.42 5.94 -39.25 -0.23 -17.65 16 13 C 0.01 0.16 9.52 -39.66 -0.38 -0.22 16 14 C -0.24 -5.29 9.79 -38.87 -0.38 -5.67 16 15 C 0.14 3.48 5.56 -106.83 -0.59 2.88 16 16 C -0.43 -9.94 9.06 -37.74 -0.34 -10.29 16 17 H 0.09 2.00 7.89 -52.49 -0.41 1.58 16 18 C 0.07 1.54 5.18 -17.34 -0.09 1.45 16 19 N -0.76 -17.37 10.94 55.55 0.61 -16.76 16 20 Si 0.92 16.32 29.59 -169.99 -5.03 11.29 16 21 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 22 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 23 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 24 C -0.17 -4.05 8.45 -38.84 -0.33 -4.38 16 25 C 0.08 1.76 6.29 -39.57 -0.25 1.51 16 26 Cl -0.10 -2.00 22.93 -51.86 -1.19 -3.19 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.85 6.04 -51.93 -0.31 0.54 16 35 H 0.07 1.20 6.67 -51.92 -0.35 0.85 16 36 H 0.07 0.91 6.19 -51.93 -0.32 0.59 16 37 H 0.06 0.99 6.17 -51.93 -0.32 0.67 16 38 H 0.12 2.29 7.31 -52.49 -0.38 1.90 16 39 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 41 H 0.13 3.29 6.23 -52.49 -0.33 2.97 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -27.58 353.81 -9.22 -36.80 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.31 Total: 6.73 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -0.72 Total: -27.54 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.26 Total: -33.85 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -2.02 Total: -49.37 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Atomic # 16 Polarization: 54.34 SS G_CDS: -0.55 Total: 53.79 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -1.19 Total: -3.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.58 -9.22 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451077091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.654 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds