Wall clock time and date at job start Wed Apr 1 2020 04:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42909 * 114.00033 * 2 1 4 4 C 1.52997 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46834 * 185.36806 * 4 3 2 6 6 C 1.52999 * 109.47497 * 305.36096 * 4 3 2 7 7 N 1.46504 * 109.47322 * 65.36807 * 4 3 2 8 8 C 1.46500 * 119.99602 * 297.60129 * 7 4 3 9 9 S 1.65597 * 119.99850 * 117.59839 * 7 4 3 10 10 O 1.42104 * 106.39890 * 162.42124 * 9 7 4 11 11 O 1.42099 * 106.40519 * 29.50279 * 9 7 4 12 12 C 1.76200 * 107.21853 * 275.95639 * 9 7 4 13 13 C 1.38638 * 119.75326 * 113.91683 * 12 9 7 14 14 C 1.37607 * 120.25980 * 180.27211 * 13 12 9 15 15 C 1.40732 * 119.77245 * 0.02562 * 14 13 12 16 16 C 1.41400 * 120.23563 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00327 * 26.81320 * 16 15 14 18 18 C 1.39946 * 119.99480 * 206.81052 * 16 15 14 19 19 N 1.30827 * 120.00581 * 14.91611 * 18 16 15 20 20 Si 1.86809 * 119.99623 * 194.91460 * 18 16 15 21 21 H 1.48496 * 109.47085 * 59.99870 * 20 18 16 22 22 H 1.48493 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46920 * 300.00221 * 20 18 16 24 24 C 1.40682 * 119.52706 * 359.97438 * 15 14 13 25 25 C 1.37757 * 119.73145 * 359.97438 * 24 15 14 26 26 Cl 1.73599 * 119.89002 * 179.97438 * 25 24 15 27 27 H 1.09005 * 109.46595 * 299.99453 * 1 2 3 28 28 H 1.08994 * 109.47545 * 59.99386 * 1 2 3 29 29 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46741 * 60.00685 * 3 2 1 31 31 H 1.08997 * 109.46871 * 300.00273 * 3 2 1 32 32 H 1.08996 * 109.46964 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47232 * 300.00838 * 6 4 3 34 34 H 1.09004 * 109.46499 * 60.00504 * 6 4 3 35 35 H 1.09008 * 109.46525 * 204.91045 * 8 7 4 36 36 H 1.08998 * 109.46890 * 324.90236 * 8 7 4 37 37 H 1.08996 * 109.47172 * 84.91267 * 8 7 4 38 38 H 1.08001 * 119.86877 * 0.25766 * 13 12 9 39 39 H 1.08000 * 120.10956 * 179.97438 * 14 13 12 40 40 H 0.96991 * 120.00025 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.13341 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1759 0.0955 6 6 3.9784 0.3119 1.1754 7 7 3.9763 0.5723 -1.2565 8 6 3.5571 -0.7903 -1.5937 9 16 4.9483 1.4206 -2.2947 10 8 5.5283 0.4652 -3.1722 11 8 5.7172 2.3057 -1.4918 12 6 3.8979 2.4316 -3.2841 13 6 3.9608 3.8115 -3.1661 14 6 3.1413 4.6109 -3.9296 15 6 2.2361 4.0232 -4.8328 16 6 1.3899 4.8352 -5.6226 17 1 1.6907 5.8404 -5.8783 18 6 0.1624 4.3363 -6.0730 19 7 -0.3385 3.2519 -5.5393 20 14 -0.7610 5.2188 -7.4361 21 1 0.0806 5.2583 -8.6589 22 1 -2.0244 4.4948 -7.7273 23 1 -1.0735 6.6051 -7.0053 24 6 2.1801 2.6219 -4.9451 25 6 3.0104 1.8408 -4.1718 26 17 2.9442 0.1113 -4.3066 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 5.0650 0.2254 1.1746 33 1 3.6504 0.7674 2.1097 34 1 3.5354 -0.6794 1.0792 35 1 4.2814 -1.2347 -2.2765 36 1 3.5004 -1.3885 -0.6844 37 1 2.5778 -0.7614 -2.0714 38 1 4.6555 4.2609 -2.4719 39 1 3.1920 5.6856 -3.8354 40 1 -1.1894 2.9064 -5.8512 41 1 1.4894 2.1606 -5.6354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451077091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:48 Heat of formation + Delta-G solvation = -125.777788 kcal Electronic energy + Delta-G solvation = -27683.127042 eV Core-core repulsion = 23715.187209 eV Total energy + Delta-G solvation = -3967.939833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.62034 -39.47526 -38.23984 -37.34794 -37.03814 -36.75461 -35.79585 -32.17526 -32.06960 -31.23787 -28.20173 -27.77817 -27.43094 -26.12894 -23.53610 -23.07832 -22.00391 -19.84239 -19.57889 -18.96279 -18.31558 -17.38693 -17.19886 -17.01375 -16.64607 -16.18240 -16.16048 -15.67840 -15.16772 -15.13616 -14.82677 -14.47726 -14.26940 -14.08377 -14.04158 -13.57901 -13.45296 -13.42412 -13.16602 -13.07763 -12.96142 -12.76754 -12.69286 -12.64332 -12.35881 -12.23205 -12.18064 -12.03445 -11.92157 -11.81255 -11.63056 -11.25894 -11.21151 -10.52947 -9.94828 -9.80807 -9.46752 -8.91245 -6.73397 -0.37907 0.30546 0.84841 1.25746 1.35796 1.43117 1.49639 2.08521 2.10971 2.43286 2.85348 2.93716 3.35325 3.54591 3.75531 4.07701 4.19350 4.29839 4.33569 4.48987 4.57670 4.61645 4.65327 4.72162 4.81957 4.83490 4.87320 4.89216 4.92593 5.00122 5.06045 5.16059 5.23001 5.24837 5.39734 5.51019 5.52837 5.75905 5.81610 5.99968 6.27093 6.31418 6.58088 6.63221 8.02362 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.004500 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.775605 B = 6220.517344 C = 6910.390400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.389 6.389 3 C 0.053 3.947 4 C 0.143 3.857 5 H 0.106 0.894 6 C -0.147 4.147 7 N -0.986 5.986 8 C 0.097 3.903 9 S 2.709 3.291 10 O -0.987 6.987 11 O -0.994 6.994 12 C -0.804 4.804 13 C 0.004 3.996 14 C -0.247 4.247 15 C 0.117 3.883 16 C -0.452 4.452 17 H 0.100 0.900 18 C 0.035 3.965 19 N -0.792 5.792 20 Si 0.991 3.009 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.252 1.252 24 C -0.189 4.189 25 C 0.069 3.931 26 Cl -0.082 7.082 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.300 0.700 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 -4.001 9.021 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.307 6.307 3 C -0.026 4.026 4 C 0.038 3.962 5 H 0.123 0.877 6 C -0.206 4.206 7 N -0.825 5.825 8 C -0.048 4.048 9 S 2.804 3.196 10 O -0.978 6.978 11 O -0.984 6.984 12 C -0.896 4.896 13 C -0.016 4.016 14 C -0.267 4.267 15 C 0.113 3.887 16 C -0.478 4.478 17 H 0.118 0.882 18 C -0.186 4.186 19 N -0.415 5.415 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.189 1.189 23 H -0.176 1.176 24 C -0.210 4.210 25 C 0.041 3.959 26 Cl -0.053 7.053 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.164 -4.591 8.989 10.160 hybrid contribution -1.459 0.704 -1.108 1.963 sum -2.622 -3.887 7.880 9.170 Atomic orbital electron populations 1.22820 0.80559 1.03460 0.99928 1.87845 1.20223 1.27269 1.95407 1.22919 0.93500 0.85400 1.00733 1.21179 0.92736 0.98368 0.83944 0.87660 1.21978 1.01392 1.00868 0.96334 1.57263 1.69018 1.25068 1.31134 1.21645 0.99969 0.81134 1.02067 1.00898 0.73593 0.72425 0.72644 1.93487 1.76216 1.61809 1.66270 1.93439 1.68536 1.66948 1.69493 1.29624 1.26877 1.07931 1.25168 1.20472 0.94830 0.90708 0.95614 1.21365 1.03866 0.99288 1.02191 1.18071 0.90092 0.91774 0.88742 1.20254 1.00961 1.01300 1.25325 0.88210 1.27014 0.98232 0.95235 0.98074 1.69814 1.17728 1.19117 1.34794 0.85084 0.77313 0.79249 0.77323 1.18241 1.18950 1.17611 1.21237 1.02177 0.94018 1.03603 1.20197 0.96108 0.82731 0.96839 1.98309 1.97705 1.12086 1.97197 0.92753 0.95711 0.88294 0.90134 0.95040 0.92375 0.89540 0.90868 0.91563 0.88809 0.92925 0.84659 0.85949 0.88874 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.39 -10.05 7.72 -148.98 -1.15 -11.20 16 3 C 0.05 1.41 5.71 71.98 0.41 1.82 16 4 C 0.14 3.94 3.15 44.99 0.14 4.08 16 5 H 0.11 2.91 7.04 -2.38 -0.02 2.90 16 6 C -0.15 -3.14 8.91 71.98 0.64 -2.50 16 7 N -0.99 -32.33 3.06 -516.50 -1.58 -33.91 16 8 C 0.10 2.93 7.20 127.77 0.92 3.85 16 9 S 2.71 108.32 5.10 -56.49 -0.29 108.03 16 10 O -0.99 -43.44 14.85 -128.00 -1.90 -45.34 16 11 O -0.99 -40.99 15.68 -128.00 -2.01 -42.99 16 12 C -0.80 -35.77 5.94 22.48 0.13 -35.64 16 13 C 0.00 0.16 9.52 22.22 0.21 0.37 16 14 C -0.25 -11.24 9.79 22.73 0.22 -11.02 16 15 C 0.12 5.82 5.56 -21.29 -0.12 5.71 16 16 C -0.45 -21.37 9.06 23.46 0.21 -21.16 16 17 H 0.10 4.38 7.89 -2.91 -0.02 4.36 16 18 C 0.03 1.52 5.18 85.26 0.44 1.96 16 19 N -0.79 -36.63 10.94 21.83 0.24 -36.40 16 20 Si 0.99 32.97 29.59 68.60 2.03 35.00 16 21 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 22 H -0.27 -8.40 7.11 99.48 0.71 -7.69 16 23 H -0.25 -8.03 7.11 99.48 0.71 -7.32 16 24 C -0.19 -9.51 8.45 22.75 0.19 -9.31 16 25 C 0.07 3.25 6.29 22.27 0.14 3.39 16 26 Cl -0.08 -3.40 22.93 -2.72 -0.06 -3.46 16 27 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.53 6.04 -2.38 -0.01 1.52 16 35 H 0.07 2.10 6.67 -2.38 -0.02 2.09 16 36 H 0.09 2.34 6.19 -2.39 -0.01 2.33 16 37 H 0.05 1.68 6.17 -2.39 -0.01 1.67 16 38 H 0.14 5.25 7.31 -2.91 -0.02 5.23 16 39 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.30 12.42 8.30 -92.71 -0.77 11.65 16 41 H 0.12 6.18 6.23 -2.91 -0.02 6.16 16 Total: -1.00 -59.32 353.81 1.13 -58.19 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.05 Total: 28.66 kcal Atomic # 6 Polarization: -61.37 SS G_CDS: 4.80 Total: -56.58 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.34 Total: -70.31 kcal Atomic # 8 Polarization: -94.48 SS G_CDS: -5.06 Total: -99.53 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.03 Total: 35.00 kcal Atomic # 16 Polarization: 108.32 SS G_CDS: -0.29 Total: 108.03 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.06 Total: -3.46 kcal Total: -59.32 1.13 -58.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451077091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.592 kcal (2) G-P(sol) polarization free energy of solvation -59.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds