Wall clock time and date at job start Wed Apr 1 2020 04:10:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42895 * 114.00762 * 2 1
4 4 C 1.52995 * 109.47584 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47376 * 180.02562 * 4 3 2
6 6 H 1.08995 * 109.46941 * 54.99724 * 5 4 3
7 7 C 1.52999 * 109.47158 * 175.00455 * 5 4 3
8 8 N 1.46496 * 109.46950 * 295.00175 * 5 4 3
9 9 S 1.65599 * 120.00258 * 145.44008 * 8 5 4
10 10 O 1.42107 * 106.39826 * 45.67285 * 9 8 5
11 11 O 1.42099 * 106.40580 * 178.59036 * 9 8 5
12 12 C 1.76198 * 107.21976 * 292.13576 * 9 8 5
13 13 C 1.38625 * 119.75907 * 115.82428 * 12 9 8
14 14 C 1.37604 * 120.26497 * 179.76448 * 13 12 9
15 15 C 1.40750 * 119.76841 * 0.50726 * 14 13 12
16 16 C 1.41399 * 120.23496 * 179.76807 * 15 14 13
17 17 H 1.08004 * 119.99531 * 153.02714 * 16 15 14
18 18 C 1.39941 * 120.00387 * 333.02218 * 16 15 14
19 19 N 1.30829 * 119.99903 * 347.88666 * 18 16 15
20 20 Si 1.86793 * 120.00068 * 167.88689 * 18 16 15
21 21 H 1.48504 * 109.47103 * 60.00126 * 20 18 16
22 22 H 1.48499 * 109.47101 * 179.97438 * 20 18 16
23 23 H 1.48498 * 109.47168 * 299.99898 * 20 18 16
24 24 C 1.40677 * 119.52327 * 359.74888 * 15 14 13
25 25 C 1.37751 * 119.73037 * 359.97438 * 24 15 14
26 26 Cl 1.73600 * 119.88622 * 179.97438 * 25 24 15
27 27 H 1.08992 * 109.47836 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.46788 * 299.99980 * 1 2 3
29 29 H 1.09002 * 109.46919 * 59.99586 * 1 2 3
30 30 H 1.09003 * 109.46572 * 60.00100 * 3 2 1
31 31 H 1.08999 * 109.46900 * 300.00368 * 3 2 1
32 32 H 1.09000 * 109.47128 * 60.00027 * 4 3 2
33 33 H 1.08998 * 109.47327 * 300.00756 * 4 3 2
34 34 H 1.09002 * 109.47415 * 180.02562 * 7 5 4
35 35 H 1.09009 * 109.46955 * 299.99524 * 7 5 4
36 36 H 1.09002 * 109.47490 * 59.99530 * 7 5 4
37 37 H 0.97007 * 120.00002 * 325.44322 * 8 5 4
38 38 H 1.08007 * 119.87192 * 359.97438 * 13 12 9
39 39 H 1.08000 * 120.12120 * 180.23174 * 14 13 12
40 40 H 0.97002 * 120.00338 * 179.97438 * 19 18 16
41 41 H 1.07999 * 120.13225 * 180.02562 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0104 1.3053 0.0000
4 6 3.5355 1.1845 0.0006
5 6 4.1580 2.5821 0.0013
6 1 3.7669 3.1536 0.8430
7 6 5.6781 2.4634 0.1275
8 7 3.8239 3.2660 -1.2504
9 16 3.5662 4.9018 -1.2571
10 8 4.6174 5.4766 -0.4929
11 8 3.3000 5.2607 -2.6060
12 6 2.0790 5.1992 -0.3602
13 6 2.1210 5.9237 0.8209
14 6 0.9652 6.1663 1.5271
15 6 -0.2619 5.6667 1.0521
16 6 -1.4548 5.9059 1.7726
17 1 -2.4024 5.9305 1.2550
18 6 -1.4077 6.1106 3.1561
19 7 -0.3103 5.8498 3.8189
20 14 -2.9115 6.7563 4.0565
21 1 -4.0424 5.8116 3.8720
22 1 -2.6050 6.8839 5.5039
23 1 -3.2829 8.0860 3.5096
24 6 -0.2930 4.9280 -0.1447
25 6 0.8754 4.7021 -0.8386
26 17 0.8418 3.7905 -2.3156
27 1 -0.3634 -1.0275 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.6888 1.8462 0.8900
31 1 1.6887 1.8463 -0.8900
32 1 3.8575 0.6434 -0.8891
33 1 3.8568 0.6436 0.8908
34 1 6.1216 3.4591 0.1285
35 1 5.9267 1.9545 1.0590
36 1 6.0691 1.8918 -0.7142
37 1 3.7536 2.7606 -2.0755
38 1 3.0642 6.3023 1.1865
39 1 1.0001 6.7342 2.4451
40 1 -0.2774 5.9921 4.7779
41 1 -1.2292 4.5404 -0.5184
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451142928.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:41
Heat of formation + Delta-G solvation = -129.097191 kcal
Electronic energy + Delta-G solvation = -27373.008505 eV
Core-core repulsion = 23404.924732 eV
Total energy + Delta-G solvation = -3968.083773 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-38.12029 -37.88967 -36.69399 -36.28125 -35.80191 -35.13610 -34.08733 -30.92873
-30.50769 -29.44546 -29.02880 -26.18710 -26.06884 -23.03969 -21.74097 -21.51687
-20.97396 -19.06873 -17.89096 -17.32647 -16.56741 -16.38475 -15.89381 -15.71110
-15.44861 -14.90083 -14.62249 -14.56898 -13.78713 -13.53524 -13.45196 -13.09092
-12.95200 -12.86846 -12.61559 -12.34493 -12.26654 -11.78816 -11.52723 -11.51803
-11.41708 -11.38356 -11.33607 -11.19697 -11.04757 -10.94795 -10.74063 -10.63003
-10.57497 -10.43628 -10.10763 -9.76546 -9.67998 -9.40465 -9.12322 -8.18627
-7.77400 -7.26720 -5.01342 1.19112 1.98023 2.54434 2.76448 2.80679
2.82180 2.85886 3.55576 3.63694 3.87722 4.07111 4.44891 4.99542
5.05324 5.11070 5.19226 5.23929 5.47215 5.51285 5.56526 5.59473
5.76426 5.77887 5.81507 5.88346 5.96937 6.01827 6.16542 6.36957
6.40121 6.47900 6.50758 6.61523 6.69672 6.91194 7.06424 7.31282
7.33570 7.37165 7.51808 7.69443 8.10182 8.29217 8.36356 9.62798
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.010845 B = 0.004628 C = 0.004106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.303533 B = 6048.762785 C = 6818.219292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.397 6.397
3 C 0.050 3.950
4 C -0.119 4.119
5 C 0.158 3.842
6 H 0.090 0.910
7 C -0.168 4.168
8 N -1.118 6.118
9 S 2.695 3.305
10 O -0.981 6.981
11 O -0.971 6.971
12 C -0.788 4.788
13 C -0.010 4.010
14 C -0.175 4.175
15 C 0.143 3.857
16 C -0.425 4.425
17 H 0.090 0.910
18 C 0.070 3.930
19 N -0.765 5.765
20 Si 0.923 3.077
21 H -0.260 1.260
22 H -0.273 1.273
23 H -0.258 1.258
24 C -0.222 4.222
25 C 0.090 3.910
26 Cl -0.102 7.102
27 H 0.080 0.920
28 H 0.043 0.957
29 H 0.041 0.959
30 H 0.054 0.946
31 H 0.063 0.937
32 H 0.074 0.926
33 H 0.080 0.920
34 H 0.072 0.928
35 H 0.064 0.936
36 H 0.058 0.942
37 H 0.411 0.589
38 H 0.117 0.883
39 H 0.131 0.869
40 H 0.292 0.708
41 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.825 -7.051 -1.749 7.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.317 6.317
3 C -0.026 4.026
4 C -0.158 4.158
5 C 0.051 3.949
6 H 0.108 0.892
7 C -0.227 4.227
8 N -0.875 5.875
9 S 2.790 3.210
10 O -0.971 6.971
11 O -0.962 6.962
12 C -0.883 4.883
13 C -0.031 4.031
14 C -0.196 4.196
15 C 0.139 3.861
16 C -0.452 4.452
17 H 0.108 0.892
18 C -0.153 4.153
19 N -0.387 5.387
20 Si 0.745 3.255
21 H -0.185 1.185
22 H -0.197 1.197
23 H -0.183 1.183
24 C -0.243 4.243
25 C 0.062 3.938
26 Cl -0.073 7.073
27 H 0.099 0.901
28 H 0.062 0.938
29 H 0.060 0.940
30 H 0.072 0.928
31 H 0.082 0.918
32 H 0.093 0.907
33 H 0.099 0.901
34 H 0.091 0.909
35 H 0.083 0.917
36 H 0.077 0.923
37 H 0.244 0.756
38 H 0.135 0.865
39 H 0.149 0.851
40 H 0.103 0.897
41 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 3.628 -6.592 -1.862 7.752
hybrid contribution -1.643 -0.072 0.459 1.707
sum 1.986 -6.664 -1.403 7.094
Atomic orbital electron populations
1.22698 0.81077 1.02021 1.00593 1.87756 1.19725 1.28555 1.95626
1.22732 0.93460 0.84378 1.02019 1.21782 0.93884 0.96494 1.03612
1.20594 0.95080 0.93231 0.86037 0.89227 1.22291 0.95122 1.03364
1.01912 1.55821 1.87418 1.28528 1.15693 1.01345 0.74265 0.71851
0.73498 1.93484 1.54807 1.75896 1.72922 1.93549 1.86383 1.81162
1.35064 1.29193 1.14752 1.27719 1.16595 1.20321 0.98516 0.93376
0.90841 1.21498 0.91825 1.04419 1.01831 1.17736 0.93583 0.85616
0.89141 1.19927 0.94838 1.38221 0.92230 0.89206 1.26149 0.98361
0.92522 0.98258 1.69761 1.27660 1.30741 1.10571 0.86095 0.80584
0.80615 0.78156 1.18471 1.19749 1.18257 1.20978 0.95387 1.07885
1.00087 1.19961 0.94720 0.93653 0.85433 1.98323 1.98718 1.73749
1.36494 0.90141 0.93816 0.93991 0.92810 0.91844 0.90740 0.90128
0.90887 0.91676 0.92298 0.75579 0.86506 0.85113 0.89655 0.87137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.43 11.01 101.05 1.11 1.54 16
2 O -0.40 -6.02 10.70 -35.23 -0.38 -6.40 16
3 C 0.05 0.76 5.83 37.16 0.22 0.98 16
4 C -0.12 -1.49 5.18 -26.73 -0.14 -1.63 16
5 C 0.16 2.15 2.75 -67.93 -0.19 1.96 16
6 H 0.09 1.33 7.99 -51.93 -0.42 0.92 16
7 C -0.17 -2.00 9.52 37.16 0.35 -1.64 16
8 N -1.12 -16.72 4.61 -4.90 -0.02 -16.75 16
9 S 2.69 51.31 4.97 -107.50 -0.53 50.78 16
10 O -0.98 -20.16 16.11 -57.17 -0.92 -21.08 16
11 O -0.97 -20.49 16.55 -57.17 -0.95 -21.44 16
12 C -0.79 -16.57 5.93 -39.25 -0.23 -16.81 16
13 C -0.01 -0.22 9.52 -39.67 -0.38 -0.60 16
14 C -0.18 -4.08 8.68 -38.86 -0.34 -4.42 16
15 C 0.14 3.37 5.57 -106.83 -0.59 2.78 16
16 C -0.43 -9.68 9.07 -37.74 -0.34 -10.02 16
17 H 0.09 1.93 7.87 -52.48 -0.41 1.52 16
18 C 0.07 1.49 5.24 -17.34 -0.09 1.40 16
19 N -0.77 -16.93 10.79 55.55 0.60 -16.33 16
20 Si 0.92 16.02 29.58 -169.99 -5.03 11.00 16
21 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16
22 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16
23 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16
24 C -0.22 -4.90 9.57 -38.84 -0.37 -5.27 16
25 C 0.09 1.90 6.29 -39.58 -0.25 1.65 16
26 Cl -0.10 -1.87 24.69 -51.86 -1.28 -3.15 16
27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
31 H 0.06 0.99 5.95 -51.93 -0.31 0.68 16
32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
34 H 0.07 0.98 7.60 -51.93 -0.39 0.59 16
35 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16
36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.41 5.37 8.83 -34.47 -0.30 5.07 16
38 H 0.12 2.39 7.31 -52.48 -0.38 2.01 16
39 H 0.13 3.08 6.13 -52.49 -0.32 2.76 16
40 H 0.29 5.83 8.30 -40.82 -0.34 5.49 16
41 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16
LS Contribution 366.65 15.07 5.53 5.53
Total: -1.00 -27.22 366.65 -9.70 -36.92
By element:
Atomic # 1 Polarization: 16.49 SS G_CDS: -5.48 Total: 11.01 kcal
Atomic # 6 Polarization: -28.85 SS G_CDS: -1.24 Total: -30.09 kcal
Atomic # 7 Polarization: -33.65 SS G_CDS: 0.58 Total: -33.07 kcal
Atomic # 8 Polarization: -46.67 SS G_CDS: -2.24 Total: -48.91 kcal
Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 11.00 kcal
Atomic # 16 Polarization: 51.31 SS G_CDS: -0.53 Total: 50.78 kcal
Atomic # 17 Polarization: -1.87 SS G_CDS: -1.28 Total: -3.15 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -27.22 -9.70 -36.92 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451142928.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.177 kcal
(2) G-P(sol) polarization free energy of solvation -27.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds