Wall clock time and date at job start Wed Apr 1 2020 04:10:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42895 * 114.00762 * 2 1
4 4 C 1.52995 * 109.47584 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47376 * 180.02562 * 4 3 2
6 6 H 1.08995 * 109.46941 * 54.99724 * 5 4 3
7 7 C 1.52999 * 109.47158 * 175.00455 * 5 4 3
8 8 N 1.46496 * 109.46950 * 295.00175 * 5 4 3
9 9 S 1.65599 * 120.00258 * 145.44008 * 8 5 4
10 10 O 1.42107 * 106.39826 * 45.67285 * 9 8 5
11 11 O 1.42099 * 106.40580 * 178.59036 * 9 8 5
12 12 C 1.76198 * 107.21976 * 292.13576 * 9 8 5
13 13 C 1.38625 * 119.75907 * 115.82428 * 12 9 8
14 14 C 1.37604 * 120.26497 * 179.76448 * 13 12 9
15 15 C 1.40750 * 119.76841 * 0.50726 * 14 13 12
16 16 C 1.41399 * 120.23496 * 179.76807 * 15 14 13
17 17 H 1.08004 * 119.99531 * 153.02714 * 16 15 14
18 18 C 1.39941 * 120.00387 * 333.02218 * 16 15 14
19 19 N 1.30829 * 119.99903 * 347.88666 * 18 16 15
20 20 Si 1.86793 * 120.00068 * 167.88689 * 18 16 15
21 21 H 1.48504 * 109.47103 * 60.00126 * 20 18 16
22 22 H 1.48499 * 109.47101 * 179.97438 * 20 18 16
23 23 H 1.48498 * 109.47168 * 299.99898 * 20 18 16
24 24 C 1.40677 * 119.52327 * 359.74888 * 15 14 13
25 25 C 1.37751 * 119.73037 * 359.97438 * 24 15 14
26 26 Cl 1.73600 * 119.88622 * 179.97438 * 25 24 15
27 27 H 1.08992 * 109.47836 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.46788 * 299.99980 * 1 2 3
29 29 H 1.09002 * 109.46919 * 59.99586 * 1 2 3
30 30 H 1.09003 * 109.46572 * 60.00100 * 3 2 1
31 31 H 1.08999 * 109.46900 * 300.00368 * 3 2 1
32 32 H 1.09000 * 109.47128 * 60.00027 * 4 3 2
33 33 H 1.08998 * 109.47327 * 300.00756 * 4 3 2
34 34 H 1.09002 * 109.47415 * 180.02562 * 7 5 4
35 35 H 1.09009 * 109.46955 * 299.99524 * 7 5 4
36 36 H 1.09002 * 109.47490 * 59.99530 * 7 5 4
37 37 H 0.97007 * 120.00002 * 325.44322 * 8 5 4
38 38 H 1.08007 * 119.87192 * 359.97438 * 13 12 9
39 39 H 1.08000 * 120.12120 * 180.23174 * 14 13 12
40 40 H 0.97002 * 120.00338 * 179.97438 * 19 18 16
41 41 H 1.07999 * 120.13225 * 180.02562 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0104 1.3053 0.0000
4 6 3.5355 1.1845 0.0006
5 6 4.1580 2.5821 0.0013
6 1 3.7669 3.1536 0.8430
7 6 5.6781 2.4634 0.1275
8 7 3.8239 3.2660 -1.2504
9 16 3.5662 4.9018 -1.2571
10 8 4.6174 5.4766 -0.4929
11 8 3.3000 5.2607 -2.6060
12 6 2.0790 5.1992 -0.3602
13 6 2.1210 5.9237 0.8209
14 6 0.9652 6.1663 1.5271
15 6 -0.2619 5.6667 1.0521
16 6 -1.4548 5.9059 1.7726
17 1 -2.4024 5.9305 1.2550
18 6 -1.4077 6.1106 3.1561
19 7 -0.3103 5.8498 3.8189
20 14 -2.9115 6.7563 4.0565
21 1 -4.0424 5.8116 3.8720
22 1 -2.6050 6.8839 5.5039
23 1 -3.2829 8.0860 3.5096
24 6 -0.2930 4.9280 -0.1447
25 6 0.8754 4.7021 -0.8386
26 17 0.8418 3.7905 -2.3156
27 1 -0.3634 -1.0275 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.6888 1.8462 0.8900
31 1 1.6887 1.8463 -0.8900
32 1 3.8575 0.6434 -0.8891
33 1 3.8568 0.6436 0.8908
34 1 6.1216 3.4591 0.1285
35 1 5.9267 1.9545 1.0590
36 1 6.0691 1.8918 -0.7142
37 1 3.7536 2.7606 -2.0755
38 1 3.0642 6.3023 1.1865
39 1 1.0001 6.7342 2.4451
40 1 -0.2774 5.9921 4.7779
41 1 -1.2292 4.5404 -0.5184
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451142928.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:40
Heat of formation + Delta-G solvation = -146.039457 kcal
Electronic energy + Delta-G solvation = -27373.743177 eV
Core-core repulsion = 23404.924732 eV
Total energy + Delta-G solvation = -3968.818445 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-39.66205 -39.19170 -38.21391 -37.59077 -37.35932 -36.76462 -35.74675 -32.22445
-32.12134 -31.14727 -30.10383 -27.77556 -27.24011 -24.16385 -23.41956 -23.22296
-22.11789 -20.54431 -19.58589 -18.84801 -18.14719 -17.61785 -17.28824 -17.07918
-16.74769 -16.24025 -16.13268 -15.92401 -15.41069 -15.09508 -14.69443 -14.54902
-14.29188 -14.12956 -14.00759 -13.90534 -13.48743 -13.34625 -13.08134 -12.99878
-12.92943 -12.80665 -12.64041 -12.43476 -12.41155 -12.17689 -12.12186 -12.06260
-11.90391 -11.81311 -11.73160 -11.36058 -11.26938 -10.61113 -10.41446 -9.90922
-9.48698 -8.89282 -6.75024 -0.34582 0.29474 0.80484 1.12919 1.36909
1.43615 1.50211 2.09925 2.19124 2.44794 2.76678 2.89142 3.36029
3.64262 3.93519 4.01956 4.07436 4.17811 4.39055 4.45964 4.47108
4.52243 4.62660 4.69181 4.74830 4.77978 4.80673 4.90804 4.96640
5.00955 5.02036 5.13029 5.21128 5.33529 5.38186 5.43541 5.59696
5.79414 5.95809 6.17572 6.19774 6.37350 6.57893 6.62581 8.03404
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.010845 B = 0.004628 C = 0.004106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.303533 B = 6048.762785 C = 6818.219292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.404 6.404
3 C 0.049 3.951
4 C -0.110 4.110
5 C 0.153 3.847
6 H 0.073 0.927
7 C -0.165 4.165
8 N -1.104 6.104
9 S 2.716 3.284
10 O -0.995 6.995
11 O -0.991 6.991
12 C -0.798 4.798
13 C -0.014 4.014
14 C -0.195 4.195
15 C 0.120 3.880
16 C -0.451 4.451
17 H 0.095 0.905
18 C 0.035 3.965
19 N -0.792 5.792
20 Si 0.992 3.008
21 H -0.255 1.255
22 H -0.264 1.264
23 H -0.258 1.258
24 C -0.237 4.237
25 C 0.088 3.912
26 Cl -0.077 7.077
27 H 0.107 0.893
28 H 0.034 0.966
29 H 0.041 0.959
30 H 0.030 0.970
31 H 0.056 0.944
32 H 0.093 0.907
33 H 0.097 0.903
34 H 0.054 0.946
35 H 0.085 0.915
36 H 0.078 0.922
37 H 0.423 0.577
38 H 0.125 0.875
39 H 0.121 0.879
40 H 0.300 0.700
41 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.963 -8.388 -1.889 9.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.324 6.324
3 C -0.028 4.028
4 C -0.149 4.149
5 C 0.046 3.954
6 H 0.091 0.909
7 C -0.224 4.224
8 N -0.865 5.865
9 S 2.809 3.191
10 O -0.985 6.985
11 O -0.981 6.981
12 C -0.891 4.891
13 C -0.034 4.034
14 C -0.215 4.215
15 C 0.116 3.884
16 C -0.477 4.477
17 H 0.113 0.887
18 C -0.185 4.185
19 N -0.414 5.414
20 Si 0.811 3.189
21 H -0.179 1.179
22 H -0.189 1.189
23 H -0.182 1.182
24 C -0.258 4.258
25 C 0.060 3.940
26 Cl -0.048 7.048
27 H 0.125 0.875
28 H 0.052 0.948
29 H 0.059 0.941
30 H 0.049 0.951
31 H 0.074 0.926
32 H 0.112 0.888
33 H 0.115 0.885
34 H 0.073 0.927
35 H 0.104 0.896
36 H 0.097 0.903
37 H 0.259 0.741
38 H 0.143 0.857
39 H 0.139 0.861
40 H 0.112 0.888
41 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 3.758 -7.933 -2.010 9.006
hybrid contribution -1.631 0.255 0.445 1.709
sum 2.127 -7.679 -1.565 8.120
Atomic orbital electron populations
1.22857 0.80266 1.03676 1.00089 1.87742 1.20688 1.28366 1.95561
1.22737 0.95214 0.84288 1.00531 1.21752 0.91874 0.95918 1.05355
1.20780 0.96627 0.93395 0.84583 0.90907 1.22272 0.93157 1.02976
1.03987 1.55472 1.86895 1.27142 1.16993 1.00685 0.73269 0.72686
0.72452 1.93465 1.54849 1.76984 1.73204 1.93516 1.86452 1.82271
1.35842 1.29556 1.16067 1.27209 1.16222 1.20463 0.98450 0.93341
0.91183 1.21493 0.92537 1.05417 1.02092 1.18041 0.94084 0.86268
0.90048 1.20225 0.94882 1.39331 0.93311 0.88667 1.26969 1.01115
0.92022 0.98395 1.69797 1.29394 1.30925 1.11320 0.85067 0.76920
0.79778 0.77098 1.17932 1.18853 1.18191 1.21104 0.96187 1.08272
1.00200 1.20042 0.94395 0.93387 0.86143 1.98319 1.98689 1.73031
1.34803 0.87474 0.94760 0.94076 0.95141 0.92579 0.88808 0.88493
0.92655 0.89573 0.90301 0.74110 0.85721 0.86100 0.88811 0.86390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.69 11.01 113.37 1.25 1.94 16
2 O -0.40 -11.67 10.70 -148.98 -1.59 -13.27 16
3 C 0.05 1.43 5.83 71.98 0.42 1.85 16
4 C -0.11 -2.53 5.18 30.59 0.16 -2.37 16
5 C 0.15 3.93 2.75 44.99 0.12 4.05 16
6 H 0.07 2.14 7.99 -2.39 -0.02 2.12 16
7 C -0.17 -3.52 9.52 71.98 0.69 -2.84 16
8 N -1.10 -31.49 4.61 -169.40 -0.78 -32.27 16
9 S 2.72 101.98 4.97 -56.49 -0.28 101.70 16
10 O -0.99 -40.50 16.11 -128.00 -2.06 -42.57 16
11 O -0.99 -40.95 16.55 -128.00 -2.12 -43.07 16
12 C -0.80 -33.91 5.93 22.48 0.13 -33.78 16
13 C -0.01 -0.64 9.52 22.21 0.21 -0.43 16
14 C -0.20 -9.42 8.68 22.73 0.20 -9.22 16
15 C 0.12 5.80 5.57 -21.29 -0.12 5.68 16
16 C -0.45 -21.00 9.07 23.46 0.21 -20.78 16
17 H 0.10 4.16 7.87 -2.91 -0.02 4.14 16
18 C 0.04 1.51 5.24 85.25 0.45 1.96 16
19 N -0.79 -35.66 10.79 21.83 0.24 -35.43 16
20 Si 0.99 32.45 29.58 68.60 2.03 34.47 16
21 H -0.26 -8.09 7.11 99.48 0.71 -7.39 16
22 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16
23 H -0.26 -8.35 7.11 99.48 0.71 -7.65 16
24 C -0.24 -10.67 9.57 22.75 0.22 -10.45 16
25 C 0.09 3.74 6.29 22.27 0.14 3.88 16
26 Cl -0.08 -2.79 24.69 -2.72 -0.07 -2.85 16
27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16
28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16
31 H 0.06 1.69 5.95 -2.39 -0.01 1.68 16
32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16
35 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16
36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.42 10.16 8.83 -96.74 -0.85 9.30 16
38 H 0.12 5.25 7.31 -2.91 -0.02 5.23 16
39 H 0.12 5.96 6.13 -2.91 -0.02 5.94 16
40 H 0.30 12.08 8.30 -92.71 -0.77 11.31 16
41 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16
Total: -1.00 -58.36 366.65 -0.36 -58.72
By element:
Atomic # 1 Polarization: 34.86 SS G_CDS: 0.20 Total: 35.06 kcal
Atomic # 6 Polarization: -64.58 SS G_CDS: 4.08 Total: -60.50 kcal
Atomic # 7 Polarization: -67.15 SS G_CDS: -0.55 Total: -67.69 kcal
Atomic # 8 Polarization: -93.13 SS G_CDS: -5.77 Total: -98.90 kcal
Atomic # 14 Polarization: 32.45 SS G_CDS: 2.03 Total: 34.47 kcal
Atomic # 16 Polarization: 101.98 SS G_CDS: -0.28 Total: 101.70 kcal
Atomic # 17 Polarization: -2.79 SS G_CDS: -0.07 Total: -2.85 kcal
Total: -58.36 -0.36 -58.72 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451142928.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.318 kcal
(2) G-P(sol) polarization free energy of solvation -58.362 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) -146.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds