Wall clock time and date at job start Wed Apr 1 2020 04:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46835 * 2 1 4 4 C 1.52996 * 109.46812 * 119.99590 * 2 1 3 5 5 O 1.42906 * 109.47545 * 295.00313 * 4 2 1 6 6 C 1.52994 * 109.47432 * 239.99965 * 2 1 3 7 7 H 1.08999 * 109.47292 * 185.00315 * 6 2 1 8 8 C 1.53001 * 109.46943 * 304.99854 * 6 2 1 9 9 N 1.46501 * 109.47457 * 65.00123 * 6 2 1 10 10 S 1.65596 * 120.00162 * 143.54346 * 9 6 2 11 11 O 1.42102 * 106.39920 * 178.54064 * 10 9 6 12 12 O 1.42097 * 106.40113 * 311.46121 * 10 9 6 13 13 C 1.76201 * 107.21840 * 65.00252 * 10 9 6 14 14 C 1.38633 * 119.75829 * 243.88833 * 13 10 9 15 15 C 1.37606 * 120.26203 * 179.75871 * 14 13 10 16 16 C 1.40738 * 119.77230 * 0.51290 * 15 14 13 17 17 C 1.41398 * 120.23892 * 179.76192 * 16 15 14 18 18 H 1.08002 * 119.99722 * 28.62350 * 17 16 15 19 19 C 1.39934 * 120.00136 * 208.62630 * 17 16 15 20 20 N 1.30823 * 120.00365 * 11.39701 * 19 17 16 21 21 Si 1.86807 * 119.99989 * 191.39829 * 19 17 16 22 22 H 1.48504 * 109.47063 * 59.99962 * 21 19 17 23 23 H 1.48505 * 109.46974 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47043 * 299.99891 * 21 19 17 25 25 C 1.40675 * 119.52369 * 359.74224 * 16 15 14 26 26 C 1.37759 * 119.73224 * 359.97438 * 25 16 15 27 27 Cl 1.73600 * 119.88554 * 179.97438 * 26 25 16 28 28 H 1.08992 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47407 * 300.00651 * 1 2 3 30 30 H 1.08999 * 109.46750 * 60.00181 * 1 2 3 31 31 H 1.09000 * 109.47156 * 175.00282 * 4 2 1 32 32 H 1.09003 * 109.47566 * 55.00310 * 4 2 1 33 33 H 0.96693 * 113.99848 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.47234 * 300.00067 * 8 6 2 35 35 H 1.09000 * 109.47266 * 60.00021 * 8 6 2 36 36 H 1.08997 * 109.46967 * 180.02562 * 8 6 2 37 37 H 0.96998 * 119.99616 * 323.54045 * 9 6 2 38 38 H 1.07999 * 119.86576 * 359.97438 * 14 13 10 39 39 H 1.07997 * 120.10927 * 180.22857 * 15 14 13 40 40 H 0.97005 * 120.00560 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.13257 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6618 0.0169 2.4131 6 6 2.0401 -0.7212 -1.2492 7 1 3.1264 -0.7995 -1.2055 8 6 1.4301 -2.1229 -1.3136 9 7 1.6526 0.0353 -2.4424 10 16 2.6775 0.1162 -3.7406 11 8 2.0080 0.8815 -4.7332 12 8 3.9546 0.4622 -3.2225 13 6 2.8286 -1.5155 -4.3882 14 6 4.0584 -2.1549 -4.3623 15 6 4.1872 -3.4311 -4.8608 16 6 3.0669 -4.0837 -5.4083 17 6 3.1891 -5.3931 -5.9278 18 1 3.9351 -6.0647 -5.5292 19 6 2.3436 -5.8188 -6.9584 20 7 1.5975 -4.9514 -7.5927 21 14 2.2803 -7.6256 -7.4285 22 1 1.8480 -8.4274 -6.2556 23 1 1.3135 -7.8143 -8.5399 24 1 3.6283 -8.0715 -7.8632 25 6 1.8246 -3.4242 -5.4347 26 6 1.7172 -2.1490 -4.9249 27 17 0.1862 -1.3311 -4.9560 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1262 -0.7994 1.2057 32 1 1.6054 -1.7197 1.2953 33 1 1.9530 -0.3828 3.2441 34 1 1.7184 -2.6858 -0.4258 35 1 0.3437 -2.0447 -1.3573 36 1 1.7938 -2.6369 -2.2033 37 1 0.7957 0.4888 -2.4720 38 1 4.9181 -1.6507 -3.9462 39 1 5.1456 -3.9282 -4.8360 40 1 1.0110 -5.2464 -8.3069 41 1 0.9585 -3.9160 -5.8522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451232932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:37 Heat of formation + Delta-G solvation = -132.826134 kcal Electronic energy + Delta-G solvation = -27014.953159 eV Core-core repulsion = 23046.707686 eV Total energy + Delta-G solvation = -3968.245472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.53187 -37.88477 -36.53086 -36.10275 -35.60918 -35.12229 -34.08753 -32.00169 -30.34205 -29.48377 -28.72908 -26.51201 -26.01885 -23.61606 -21.76612 -21.34595 -19.51514 -18.98962 -17.83829 -17.76136 -17.23882 -16.53562 -15.79665 -15.57808 -15.36351 -14.68596 -14.48668 -14.17419 -13.98467 -13.79191 -13.40971 -13.27732 -12.75468 -12.72116 -12.51194 -12.34478 -12.09656 -11.83990 -11.68255 -11.52004 -11.47262 -11.40143 -11.28342 -11.16644 -10.90296 -10.70718 -10.67055 -10.57982 -10.46868 -10.37426 -10.09529 -10.04151 -9.74362 -9.59900 -9.10424 -8.07847 -7.73954 -7.20762 -4.96699 1.21080 2.02099 2.62184 2.82601 2.84568 2.86516 2.99220 3.57739 3.61828 4.07293 4.16307 4.46684 4.74739 4.86551 5.01928 5.10858 5.26644 5.28756 5.34961 5.42960 5.58426 5.63935 5.79360 5.90815 5.94126 6.03061 6.14621 6.21259 6.33998 6.43751 6.56348 6.60647 6.66068 6.79533 6.97827 7.15022 7.29376 7.36681 7.47051 7.56134 7.75499 8.07458 8.34015 8.38879 9.69015 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003674 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.542826 B = 7618.557120 C = 8125.644855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.083 0.917 4 C 0.079 3.921 5 O -0.574 6.574 6 C 0.161 3.839 7 H 0.091 0.909 8 C -0.180 4.180 9 N -1.114 6.114 10 S 2.696 3.304 11 O -0.969 6.969 12 O -0.986 6.986 13 C -0.787 4.787 14 C 0.008 3.992 15 C -0.233 4.233 16 C 0.145 3.855 17 C -0.429 4.429 18 H 0.091 0.909 19 C 0.068 3.932 20 N -0.766 5.766 21 Si 0.922 3.078 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.260 1.260 25 C -0.164 4.164 26 C 0.078 3.922 27 Cl -0.101 7.101 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.377 0.623 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.292 0.708 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 1.319 11.818 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.102 0.898 4 C 0.001 3.999 5 O -0.379 6.379 6 C 0.053 3.947 7 H 0.109 0.891 8 C -0.238 4.238 9 N -0.871 5.871 10 S 2.792 3.208 11 O -0.959 6.959 12 O -0.977 6.977 13 C -0.882 4.882 14 C -0.012 4.012 15 C -0.254 4.254 16 C 0.141 3.859 17 C -0.456 4.456 18 H 0.109 0.891 19 C -0.154 4.154 20 N -0.388 5.388 21 Si 0.745 3.255 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.185 1.185 25 C -0.185 4.185 26 C 0.049 3.951 27 Cl -0.073 7.073 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.224 0.776 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.245 0.755 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.055 2.519 10.842 11.319 hybrid contribution -0.466 -1.709 -0.108 1.775 sum -2.521 0.810 10.734 11.056 Atomic orbital electron populations 1.21829 0.94424 1.02276 1.01754 1.21340 0.97192 1.00676 0.92292 0.89823 1.22259 0.98258 0.94220 0.85149 1.86459 1.81557 1.53493 1.16350 1.20555 0.99572 0.90742 0.83807 0.89105 1.22487 1.02194 0.96024 1.03112 1.55713 1.34909 1.66472 1.30000 1.01234 0.72507 0.74631 0.72385 1.93558 1.75089 1.69807 1.57478 1.93474 1.40796 1.83358 1.80041 1.29091 1.00017 1.26188 1.32890 1.20194 0.93555 0.94172 0.93305 1.21119 0.97966 0.95578 1.10738 1.17725 0.89911 0.92044 0.86244 1.19917 1.14344 0.97560 1.13774 0.89089 1.26164 0.93197 1.00847 0.95202 1.69764 1.16949 1.36383 1.15677 0.86111 0.79616 0.80618 0.79157 1.18335 1.19800 1.18476 1.21318 0.99206 0.93225 1.04740 1.20017 0.83326 0.93230 0.98492 1.98317 1.32521 1.79151 1.97288 0.92080 0.92120 0.92644 0.93310 0.92998 0.77632 0.92027 0.91566 0.90644 0.75495 0.86561 0.87562 0.89616 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.47 37.16 0.31 -1.24 16 2 C -0.09 -1.08 2.60 -90.62 -0.24 -1.32 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.08 0.77 6.05 37.16 0.22 1.00 16 5 O -0.57 -5.55 13.20 -35.23 -0.46 -6.01 16 6 C 0.16 2.12 2.69 -67.93 -0.18 1.94 16 7 H 0.09 1.24 7.50 -51.93 -0.39 0.85 16 8 C -0.18 -2.32 8.78 37.16 0.33 -1.99 16 9 N -1.11 -16.80 5.14 -4.89 -0.03 -16.83 16 10 S 2.70 52.16 5.02 -107.50 -0.54 51.62 16 11 O -0.97 -21.16 16.53 -57.17 -0.95 -22.10 16 12 O -0.99 -20.48 16.29 -57.17 -0.93 -21.41 16 13 C -0.79 -16.64 4.98 -39.25 -0.20 -16.84 16 14 C 0.01 0.17 9.52 -39.67 -0.38 -0.21 16 15 C -0.23 -5.12 9.79 -38.87 -0.38 -5.50 16 16 C 0.14 3.43 5.55 -106.83 -0.59 2.84 16 17 C -0.43 -9.86 9.06 -37.75 -0.34 -10.20 16 18 H 0.09 1.95 7.87 -52.49 -0.41 1.53 16 19 C 0.07 1.50 5.24 -17.35 -0.09 1.41 16 20 N -0.77 -17.70 10.87 55.55 0.60 -17.10 16 21 Si 0.92 16.29 29.57 -169.99 -5.03 11.27 16 22 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 23 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 24 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 25 C -0.16 -3.88 8.43 -38.84 -0.33 -4.21 16 26 C 0.08 1.71 5.86 -39.57 -0.23 1.48 16 27 Cl -0.10 -2.02 26.40 -51.86 -1.37 -3.38 16 28 H 0.06 0.62 6.34 -51.93 -0.33 0.29 16 29 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 30 H 0.05 0.58 6.73 -51.93 -0.35 0.23 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.45 6.81 -51.93 -0.35 0.09 16 33 H 0.38 1.92 9.12 45.56 0.42 2.34 16 34 H 0.06 0.66 6.68 -51.93 -0.35 0.31 16 35 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 36 H 0.07 1.18 6.72 -51.93 -0.35 0.83 16 37 H 0.41 5.53 7.33 -34.47 -0.25 5.28 16 38 H 0.12 2.24 7.31 -52.49 -0.38 1.85 16 39 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 41 H 0.13 3.27 6.24 -52.49 -0.33 2.94 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -29.04 356.84 -9.63 -38.67 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -4.22 Total: 12.74 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -2.09 Total: -32.85 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.58 Total: -33.92 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -2.34 Total: -49.52 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.27 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.54 Total: 51.62 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -1.37 Total: -3.38 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.04 -9.63 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451232932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.155 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds