Wall clock time and date at job start Wed Apr 1 2020 04:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46835 * 2 1 4 4 C 1.52996 * 109.46812 * 119.99590 * 2 1 3 5 5 O 1.42906 * 109.47545 * 295.00313 * 4 2 1 6 6 C 1.52994 * 109.47432 * 239.99965 * 2 1 3 7 7 H 1.08999 * 109.47292 * 185.00315 * 6 2 1 8 8 C 1.53001 * 109.46943 * 304.99854 * 6 2 1 9 9 N 1.46501 * 109.47457 * 65.00123 * 6 2 1 10 10 S 1.65596 * 120.00162 * 143.54346 * 9 6 2 11 11 O 1.42102 * 106.39920 * 178.54064 * 10 9 6 12 12 O 1.42097 * 106.40113 * 311.46121 * 10 9 6 13 13 C 1.76201 * 107.21840 * 65.00252 * 10 9 6 14 14 C 1.38633 * 119.75829 * 243.88833 * 13 10 9 15 15 C 1.37606 * 120.26203 * 179.75871 * 14 13 10 16 16 C 1.40738 * 119.77230 * 0.51290 * 15 14 13 17 17 C 1.41398 * 120.23892 * 179.76192 * 16 15 14 18 18 H 1.08002 * 119.99722 * 28.62350 * 17 16 15 19 19 C 1.39934 * 120.00136 * 208.62630 * 17 16 15 20 20 N 1.30823 * 120.00365 * 11.39701 * 19 17 16 21 21 Si 1.86807 * 119.99989 * 191.39829 * 19 17 16 22 22 H 1.48504 * 109.47063 * 59.99962 * 21 19 17 23 23 H 1.48505 * 109.46974 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47043 * 299.99891 * 21 19 17 25 25 C 1.40675 * 119.52369 * 359.74224 * 16 15 14 26 26 C 1.37759 * 119.73224 * 359.97438 * 25 16 15 27 27 Cl 1.73600 * 119.88554 * 179.97438 * 26 25 16 28 28 H 1.08992 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47407 * 300.00651 * 1 2 3 30 30 H 1.08999 * 109.46750 * 60.00181 * 1 2 3 31 31 H 1.09000 * 109.47156 * 175.00282 * 4 2 1 32 32 H 1.09003 * 109.47566 * 55.00310 * 4 2 1 33 33 H 0.96693 * 113.99848 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.47234 * 300.00067 * 8 6 2 35 35 H 1.09000 * 109.47266 * 60.00021 * 8 6 2 36 36 H 1.08997 * 109.46967 * 180.02562 * 8 6 2 37 37 H 0.96998 * 119.99616 * 323.54045 * 9 6 2 38 38 H 1.07999 * 119.86576 * 359.97438 * 14 13 10 39 39 H 1.07997 * 120.10927 * 180.22857 * 15 14 13 40 40 H 0.97005 * 120.00560 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.13257 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6618 0.0169 2.4131 6 6 2.0401 -0.7212 -1.2492 7 1 3.1264 -0.7995 -1.2055 8 6 1.4301 -2.1229 -1.3136 9 7 1.6526 0.0353 -2.4424 10 16 2.6775 0.1162 -3.7406 11 8 2.0080 0.8815 -4.7332 12 8 3.9546 0.4622 -3.2225 13 6 2.8286 -1.5155 -4.3882 14 6 4.0584 -2.1549 -4.3623 15 6 4.1872 -3.4311 -4.8608 16 6 3.0669 -4.0837 -5.4083 17 6 3.1891 -5.3931 -5.9278 18 1 3.9351 -6.0647 -5.5292 19 6 2.3436 -5.8188 -6.9584 20 7 1.5975 -4.9514 -7.5927 21 14 2.2803 -7.6256 -7.4285 22 1 1.8480 -8.4274 -6.2556 23 1 1.3135 -7.8143 -8.5399 24 1 3.6283 -8.0715 -7.8632 25 6 1.8246 -3.4242 -5.4347 26 6 1.7172 -2.1490 -4.9249 27 17 0.1862 -1.3311 -4.9560 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1262 -0.7994 1.2057 32 1 1.6054 -1.7197 1.2953 33 1 1.9530 -0.3828 3.2441 34 1 1.7184 -2.6858 -0.4258 35 1 0.3437 -2.0447 -1.3573 36 1 1.7938 -2.6369 -2.2033 37 1 0.7957 0.4888 -2.4720 38 1 4.9181 -1.6507 -3.9462 39 1 5.1456 -3.9282 -4.8360 40 1 1.0110 -5.2464 -8.3069 41 1 0.9585 -3.9160 -5.8522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451232932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:37 Heat of formation + Delta-G solvation = -153.431629 kcal Electronic energy + Delta-G solvation = -27015.846680 eV Core-core repulsion = 23046.707686 eV Total energy + Delta-G solvation = -3969.138993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.64878 -39.41657 -38.14675 -37.31334 -36.96393 -36.78111 -35.76207 -33.07966 -32.04893 -31.20621 -29.78823 -27.72800 -27.32159 -24.61562 -23.46107 -23.05284 -20.51192 -20.47124 -19.53851 -18.80949 -18.57586 -18.06671 -17.30174 -16.87573 -16.34076 -16.18447 -15.98218 -15.44382 -15.17988 -15.05049 -14.80636 -14.48621 -14.44691 -14.21804 -13.94355 -13.38112 -13.34902 -13.16990 -13.08386 -13.03126 -12.91014 -12.83798 -12.72904 -12.69928 -12.28454 -12.06396 -12.00823 -11.91123 -11.81182 -11.61237 -11.52852 -11.33414 -11.20399 -10.75579 -10.40487 -9.80710 -9.46038 -8.85444 -6.71416 -0.34373 0.32361 0.87742 1.27735 1.37993 1.44767 1.51583 2.10946 2.18400 2.47909 2.88474 3.32380 3.40968 3.68309 3.81466 3.95070 4.18396 4.24142 4.38997 4.43440 4.46116 4.63607 4.71111 4.75505 4.86390 4.93956 4.95216 4.99823 5.05271 5.09310 5.23605 5.26397 5.29407 5.40268 5.43027 5.56628 5.60232 5.83510 6.03716 6.16913 6.35142 6.61961 6.66366 6.98353 8.07325 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003674 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.542826 B = 7618.557120 C = 8125.644855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.075 0.925 4 C 0.080 3.920 5 O -0.589 6.589 6 C 0.157 3.843 7 H 0.088 0.912 8 C -0.177 4.177 9 N -1.102 6.102 10 S 2.716 3.284 11 O -0.995 6.995 12 O -0.998 6.998 13 C -0.793 4.793 14 C 0.004 3.996 15 C -0.243 4.243 16 C 0.121 3.879 17 C -0.455 4.455 18 H 0.100 0.900 19 C 0.032 3.968 20 N -0.801 5.801 21 Si 0.993 3.007 22 H -0.254 1.254 23 H -0.269 1.269 24 H -0.255 1.255 25 C -0.185 4.185 26 C 0.075 3.925 27 Cl -0.086 7.086 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.420 0.580 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.298 0.702 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 0.695 13.161 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.093 0.907 4 C 0.002 3.998 5 O -0.398 6.398 6 C 0.051 3.949 7 H 0.106 0.894 8 C -0.236 4.236 9 N -0.863 5.863 10 S 2.810 3.190 11 O -0.985 6.985 12 O -0.989 6.989 13 C -0.886 4.886 14 C -0.016 4.016 15 C -0.263 4.263 16 C 0.117 3.883 17 C -0.482 4.482 18 H 0.118 0.882 19 C -0.187 4.187 20 N -0.424 5.424 21 Si 0.812 3.188 22 H -0.178 1.178 23 H -0.193 1.193 24 H -0.179 1.179 25 C -0.206 4.206 26 C 0.046 3.954 27 Cl -0.057 7.057 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.247 0.753 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.257 0.743 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.110 0.890 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.121 1.891 12.198 12.524 hybrid contribution -0.467 -1.398 -0.419 1.532 sum -2.589 0.493 11.779 12.070 Atomic orbital electron populations 1.21822 0.93869 1.02686 1.01762 1.21278 0.97623 1.00115 0.92190 0.90687 1.22212 0.98663 0.94391 0.84511 1.86402 1.81856 1.54168 1.17332 1.20742 0.99603 0.90931 0.83671 0.89415 1.22463 1.02474 0.95695 1.02930 1.55374 1.34852 1.66654 1.29370 1.00571 0.72435 0.73513 0.72432 1.93519 1.75533 1.70226 1.59213 1.93454 1.41935 1.83226 1.80243 1.29438 0.99794 1.26860 1.32477 1.20448 0.94170 0.94037 0.92905 1.21340 0.98236 0.96072 1.10677 1.18061 0.90442 0.92871 0.86966 1.20242 1.15519 0.97813 1.14585 0.88180 1.27024 0.92201 1.04939 0.94539 1.69824 1.17727 1.38445 1.16363 0.85058 0.79742 0.75070 0.78898 1.17784 1.19335 1.17902 1.21269 0.99021 0.94148 1.06157 1.20117 0.84351 0.92979 0.97908 1.98310 1.31515 1.78682 1.97207 0.91451 0.92009 0.92756 0.92700 0.91642 0.75320 0.89527 0.90957 0.93516 0.74328 0.84803 0.86061 0.89028 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.47 71.98 0.61 -2.18 16 2 C -0.09 -1.91 2.60 -10.80 -0.03 -1.94 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.08 1.36 6.05 71.98 0.44 1.80 16 5 O -0.59 -9.95 13.20 -148.98 -1.97 -11.91 16 6 C 0.16 3.92 2.69 44.99 0.12 4.04 16 7 H 0.09 2.27 7.50 -2.39 -0.02 2.25 16 8 C -0.18 -4.31 8.78 71.98 0.63 -3.68 16 9 N -1.10 -32.10 5.14 -169.39 -0.87 -32.97 16 10 S 2.72 103.47 5.02 -56.49 -0.28 103.18 16 11 O -0.99 -43.00 16.53 -128.00 -2.12 -45.11 16 12 O -1.00 -40.51 16.29 -128.00 -2.08 -42.59 16 13 C -0.79 -33.49 4.98 22.48 0.11 -33.38 16 14 C 0.00 0.18 9.52 22.21 0.21 0.39 16 15 C -0.24 -10.71 9.79 22.73 0.22 -10.48 16 16 C 0.12 5.82 5.55 -21.30 -0.12 5.70 16 17 C -0.45 -21.15 9.06 23.46 0.21 -20.94 16 18 H 0.10 4.29 7.87 -2.91 -0.02 4.27 16 19 C 0.03 1.41 5.24 85.25 0.45 1.86 16 20 N -0.80 -37.69 10.87 21.82 0.24 -37.45 16 21 Si 0.99 32.92 29.57 68.60 2.03 34.95 16 22 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 23 H -0.27 -8.63 7.11 99.48 0.71 -7.92 16 24 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 25 C -0.19 -8.97 8.43 22.75 0.19 -8.78 16 26 C 0.07 3.33 5.86 22.27 0.13 3.46 16 27 Cl -0.09 -3.41 26.40 -2.72 -0.07 -3.48 16 28 H 0.07 1.21 6.34 -2.39 -0.02 1.20 16 29 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 30 H 0.05 1.04 6.73 -2.39 -0.02 1.03 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.93 6.81 -2.39 -0.02 0.91 16 33 H 0.40 3.01 9.12 -74.06 -0.68 2.34 16 34 H 0.09 1.65 6.68 -2.39 -0.02 1.64 16 35 H 0.07 1.66 6.34 -2.39 -0.02 1.64 16 36 H 0.05 1.43 6.72 -2.39 -0.02 1.41 16 37 H 0.42 10.81 7.33 -96.75 -0.71 10.10 16 38 H 0.13 5.04 7.31 -2.91 -0.02 5.02 16 39 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.30 12.69 8.30 -92.70 -0.77 11.92 16 41 H 0.12 6.06 6.24 -2.91 -0.02 6.04 16 Total: -1.00 -61.85 356.84 -2.23 -64.08 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.29 Total: 35.43 kcal Atomic # 6 Polarization: -67.31 SS G_CDS: 3.18 Total: -64.13 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.63 Total: -70.41 kcal Atomic # 8 Polarization: -93.45 SS G_CDS: -6.17 Total: -99.62 kcal Atomic # 14 Polarization: 32.92 SS G_CDS: 2.03 Total: 34.95 kcal Atomic # 16 Polarization: 103.47 SS G_CDS: -0.28 Total: 103.18 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.07 Total: -3.48 kcal Total: -61.85 -2.23 -64.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451232932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.350 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds