Wall clock time and date at job start Wed Apr 1 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 O 1.42897 * 109.46906 * 240.00243 * 2 1 3 5 5 C 1.52998 * 109.47057 * 120.00022 * 2 1 3 6 6 C 1.53004 * 109.47097 * 184.99643 * 5 2 1 7 7 N 1.46496 * 109.47230 * 180.02562 * 6 5 2 8 8 C 1.46502 * 119.99908 * 275.00309 * 7 6 5 9 9 S 1.65600 * 120.00009 * 95.00459 * 7 6 5 10 10 O 1.42102 * 106.40184 * 151.39003 * 9 7 6 11 11 O 1.42090 * 106.40197 * 18.46595 * 9 7 6 12 12 C 1.76203 * 107.21434 * 264.92727 * 9 7 6 13 13 C 1.38632 * 119.75926 * 345.65019 * 12 9 7 14 14 C 1.37601 * 120.26336 * 180.29997 * 13 12 9 15 15 C 1.40747 * 119.77132 * 359.72416 * 14 13 12 16 16 C 1.41389 * 120.23847 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00371 * 26.81488 * 16 15 14 18 18 C 1.39942 * 120.00038 * 206.81718 * 16 15 14 19 19 N 1.30828 * 120.00185 * 12.75278 * 18 16 15 20 20 Si 1.86804 * 120.00368 * 192.75716 * 18 16 15 21 21 H 1.48491 * 109.47330 * 89.99641 * 20 18 16 22 22 H 1.48496 * 109.47353 * 210.00054 * 20 18 16 23 23 H 1.48504 * 109.46597 * 329.99822 * 20 18 16 24 24 C 1.40682 * 119.52120 * 359.97438 * 15 14 13 25 25 C 1.37758 * 119.73199 * 0.02562 * 24 15 14 26 26 Cl 1.73601 * 119.88624 * 179.97438 * 25 24 15 27 27 H 1.08998 * 109.46993 * 299.99901 * 1 2 3 28 28 H 1.08993 * 109.46858 * 59.99629 * 1 2 3 29 29 H 1.08992 * 109.46903 * 179.97438 * 1 2 3 30 30 H 0.96698 * 114.00349 * 299.99421 * 4 2 1 31 31 H 1.09002 * 109.46934 * 65.00245 * 5 2 1 32 32 H 1.08990 * 109.47628 * 305.00044 * 5 2 1 33 33 H 1.09002 * 109.46736 * 60.00481 * 6 5 2 34 34 H 1.09004 * 109.47308 * 300.00838 * 6 5 2 35 35 H 1.09010 * 109.47218 * 265.37686 * 8 7 6 36 36 H 1.08999 * 109.47398 * 25.37805 * 8 7 6 37 37 H 1.08993 * 109.47388 * 145.37910 * 8 7 6 38 38 H 1.08001 * 119.87178 * 359.97438 * 13 12 9 39 39 H 1.08004 * 120.11897 * 179.70013 * 14 13 12 40 40 H 0.96993 * 120.00394 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.12842 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5649 -0.6134 1.3136 7 7 4.0533 -1.3045 2.5094 8 6 4.0898 -0.6050 3.7962 9 16 4.5641 -2.8764 2.4067 10 8 5.5415 -3.0479 3.4238 11 8 4.8213 -3.1256 1.0317 12 6 3.1992 -3.8983 2.8508 13 6 2.0957 -3.3391 3.4765 14 6 1.0268 -4.1286 3.8334 15 6 1.0534 -5.5082 3.5559 16 6 -0.0398 -6.3285 3.9178 17 1 -1.0303 -5.9050 3.9956 18 6 0.1615 -7.6892 4.1754 19 7 1.3751 -8.1536 4.3278 20 14 -1.3025 -8.8427 4.3014 21 1 -1.6128 -9.3971 2.9593 22 1 -0.9792 -9.9529 5.2330 23 1 -2.4793 -8.0947 4.8123 24 6 2.1752 -6.0648 2.9149 25 6 3.2343 -5.2557 2.5665 26 17 4.6209 -5.9385 1.7760 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7211 -1.5952 -1.2329 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2618 2.1369 33 1 3.8533 0.4369 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 5.0807 -0.1771 3.9492 36 1 3.3458 0.1917 3.7979 37 1 3.8701 -1.3089 4.5988 38 1 2.0772 -2.2804 3.6894 39 1 0.1703 -3.6912 4.3251 40 1 1.5147 -9.0967 4.5059 41 1 2.2058 -7.1221 2.6970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451250894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:23 Heat of formation + Delta-G solvation = -126.345052 kcal Electronic energy + Delta-G solvation = -27095.330612 eV Core-core repulsion = 23127.366181 eV Total energy + Delta-G solvation = -3967.964431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.20733 -37.88227 -36.45784 -36.07888 -35.65826 -35.08344 -34.10293 -31.96887 -30.35000 -29.55382 -29.21903 -26.05206 -26.00487 -23.06767 -21.84118 -21.57825 -21.09722 -18.43104 -17.88483 -17.34401 -16.67137 -16.25628 -16.02743 -15.69092 -15.58828 -14.60356 -14.42370 -14.09420 -14.03947 -13.70657 -13.37049 -13.29098 -12.94838 -12.64037 -12.58514 -12.43092 -12.36592 -12.02461 -11.87629 -11.68407 -11.47077 -11.42748 -11.34502 -11.23032 -11.16794 -10.79859 -10.74264 -10.56911 -10.51194 -10.37497 -10.14305 -10.09096 -9.69071 -9.56745 -8.82120 -8.09364 -7.76399 -7.21624 -4.96624 1.12190 2.02074 2.57993 2.82016 2.85056 2.87582 2.98222 3.45207 3.58593 4.07596 4.35013 4.40995 4.70167 4.90370 4.96531 5.05737 5.09820 5.23510 5.36730 5.43095 5.56088 5.63272 5.66207 5.72132 5.75541 5.85524 5.94920 6.03551 6.22086 6.26617 6.32663 6.52660 6.61748 6.76723 6.81840 6.94257 7.10604 7.28513 7.53723 7.67147 7.72422 8.06795 8.33095 8.38074 9.68291 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.004281 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.904043 B = 6538.573065 C = 7750.354183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.096 0.904 4 O -0.565 6.565 5 C -0.180 4.180 6 C 0.122 3.878 7 N -1.008 6.008 8 C 0.092 3.908 9 S 2.696 3.304 10 O -0.974 6.974 11 O -0.965 6.965 12 C -0.786 4.786 13 C -0.001 4.001 14 C -0.232 4.232 15 C 0.141 3.859 16 C -0.428 4.428 17 H 0.091 0.909 18 C 0.068 3.932 19 N -0.764 5.764 20 Si 0.922 3.078 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.258 1.258 24 C -0.163 4.163 25 C 0.076 3.924 26 Cl -0.103 7.103 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.380 0.620 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.292 0.708 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 10.973 -2.721 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.114 0.886 4 O -0.371 6.371 5 C -0.219 4.219 6 C -0.004 4.004 7 N -0.845 5.845 8 C -0.053 4.053 9 S 2.792 3.208 10 O -0.964 6.964 11 O -0.955 6.955 12 C -0.879 4.879 13 C -0.021 4.021 14 C -0.252 4.252 15 C 0.137 3.863 16 C -0.455 4.455 17 H 0.109 0.891 18 C -0.155 4.155 19 N -0.387 5.387 20 Si 0.745 3.255 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.182 1.182 24 C -0.183 4.183 25 C 0.047 3.953 26 Cl -0.074 7.074 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.243 11.027 -3.057 11.510 hybrid contribution -1.561 -1.347 0.652 2.163 sum -2.805 9.680 -2.405 10.361 Atomic orbital electron populations 1.22504 0.96487 1.02941 1.02397 1.21817 0.92761 0.96440 0.84377 0.88565 1.86534 1.77325 1.29584 1.43663 1.22880 0.97175 1.02881 0.98990 1.21311 0.93348 0.98213 0.87484 1.57527 1.81777 1.30545 1.14626 1.21476 1.01971 0.98053 0.83827 1.01573 0.74134 0.71519 0.73624 1.93523 1.57795 1.84922 1.60169 1.93518 1.84607 1.83766 1.33610 1.29096 1.21131 1.06151 1.31518 1.20062 0.91854 0.97125 0.93071 1.21081 0.99655 0.94815 1.09683 1.17703 0.91398 0.91434 0.85737 1.19932 0.95885 0.92774 1.36921 0.89061 1.26182 0.97675 0.99329 0.92275 1.69771 1.22497 1.17098 1.29286 0.86056 0.80738 0.79148 0.79540 1.18709 1.19708 1.18152 1.21354 0.93765 1.00067 1.03148 1.19979 0.88318 0.91299 0.95692 1.98329 1.43456 1.85903 1.79704 0.91672 0.92014 0.91950 0.77222 0.90287 0.90567 0.90589 0.88179 0.92526 0.91049 0.91148 0.87504 0.87698 0.89617 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 9.54 37.16 0.35 -1.33 16 2 C 0.11 1.08 3.59 -26.73 -0.10 0.98 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.56 -6.82 12.87 -35.23 -0.45 -7.28 16 5 C -0.18 -2.06 5.20 -26.73 -0.14 -2.20 16 6 C 0.12 1.56 5.52 -4.04 -0.02 1.54 16 7 N -1.01 -15.12 2.39 -121.75 -0.29 -15.41 16 8 C 0.09 1.12 9.42 59.85 0.56 1.69 16 9 S 2.70 54.48 4.79 -107.50 -0.51 53.96 16 10 O -0.97 -22.17 17.35 -57.17 -0.99 -23.16 16 11 O -0.96 -20.95 15.19 -57.17 -0.87 -21.82 16 12 C -0.79 -17.22 5.86 -39.25 -0.23 -17.45 16 13 C 0.00 -0.03 9.01 -39.67 -0.36 -0.39 16 14 C -0.23 -4.98 9.79 -38.87 -0.38 -5.36 16 15 C 0.14 3.39 5.57 -106.83 -0.59 2.80 16 16 C -0.43 -9.91 9.07 -37.75 -0.34 -10.25 16 17 H 0.09 1.96 7.88 -52.49 -0.41 1.55 16 18 C 0.07 1.50 5.23 -17.34 -0.09 1.41 16 19 N -0.76 -17.87 10.82 55.55 0.60 -17.27 16 20 Si 0.92 16.40 29.58 -169.99 -5.03 11.37 16 21 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 22 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 23 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 24 C -0.16 -4.02 8.45 -38.83 -0.33 -4.35 16 25 C 0.08 1.82 6.29 -39.58 -0.25 1.57 16 26 Cl -0.10 -2.33 26.80 -51.86 -1.39 -3.72 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.38 3.89 9.05 45.56 0.41 4.30 16 31 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.10 1.46 6.56 -51.93 -0.34 1.12 16 35 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 37 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 38 H 0.11 1.72 6.16 -52.49 -0.32 1.40 16 39 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 40 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 41 H 0.14 3.48 6.15 -52.49 -0.32 3.16 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -29.76 366.10 -10.05 -39.81 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.72 Total: 9.34 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -1.91 Total: -31.35 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.31 Total: -32.68 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -2.31 Total: -52.25 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -5.03 Total: 11.37 kcal Atomic # 16 Polarization: 54.48 SS G_CDS: -0.51 Total: 53.96 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.39 Total: -3.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.76 -10.05 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451250894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.540 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds