Wall clock time and date at job start Wed Apr 1 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 O 1.42897 * 109.46906 * 240.00243 * 2 1 3 5 5 C 1.52998 * 109.47057 * 120.00022 * 2 1 3 6 6 C 1.53004 * 109.47097 * 184.99643 * 5 2 1 7 7 N 1.46496 * 109.47230 * 180.02562 * 6 5 2 8 8 C 1.46502 * 119.99908 * 275.00309 * 7 6 5 9 9 S 1.65600 * 120.00009 * 95.00459 * 7 6 5 10 10 O 1.42102 * 106.40184 * 151.39003 * 9 7 6 11 11 O 1.42090 * 106.40197 * 18.46595 * 9 7 6 12 12 C 1.76203 * 107.21434 * 264.92727 * 9 7 6 13 13 C 1.38632 * 119.75926 * 345.65019 * 12 9 7 14 14 C 1.37601 * 120.26336 * 180.29997 * 13 12 9 15 15 C 1.40747 * 119.77132 * 359.72416 * 14 13 12 16 16 C 1.41389 * 120.23847 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00371 * 26.81488 * 16 15 14 18 18 C 1.39942 * 120.00038 * 206.81718 * 16 15 14 19 19 N 1.30828 * 120.00185 * 12.75278 * 18 16 15 20 20 Si 1.86804 * 120.00368 * 192.75716 * 18 16 15 21 21 H 1.48491 * 109.47330 * 89.99641 * 20 18 16 22 22 H 1.48496 * 109.47353 * 210.00054 * 20 18 16 23 23 H 1.48504 * 109.46597 * 329.99822 * 20 18 16 24 24 C 1.40682 * 119.52120 * 359.97438 * 15 14 13 25 25 C 1.37758 * 119.73199 * 0.02562 * 24 15 14 26 26 Cl 1.73601 * 119.88624 * 179.97438 * 25 24 15 27 27 H 1.08998 * 109.46993 * 299.99901 * 1 2 3 28 28 H 1.08993 * 109.46858 * 59.99629 * 1 2 3 29 29 H 1.08992 * 109.46903 * 179.97438 * 1 2 3 30 30 H 0.96698 * 114.00349 * 299.99421 * 4 2 1 31 31 H 1.09002 * 109.46934 * 65.00245 * 5 2 1 32 32 H 1.08990 * 109.47628 * 305.00044 * 5 2 1 33 33 H 1.09002 * 109.46736 * 60.00481 * 6 5 2 34 34 H 1.09004 * 109.47308 * 300.00838 * 6 5 2 35 35 H 1.09010 * 109.47218 * 265.37686 * 8 7 6 36 36 H 1.08999 * 109.47398 * 25.37805 * 8 7 6 37 37 H 1.08993 * 109.47388 * 145.37910 * 8 7 6 38 38 H 1.08001 * 119.87178 * 359.97438 * 13 12 9 39 39 H 1.08004 * 120.11897 * 179.70013 * 14 13 12 40 40 H 0.96993 * 120.00394 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.12842 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5649 -0.6134 1.3136 7 7 4.0533 -1.3045 2.5094 8 6 4.0898 -0.6050 3.7962 9 16 4.5641 -2.8764 2.4067 10 8 5.5415 -3.0479 3.4238 11 8 4.8213 -3.1256 1.0317 12 6 3.1992 -3.8983 2.8508 13 6 2.0957 -3.3391 3.4765 14 6 1.0268 -4.1286 3.8334 15 6 1.0534 -5.5082 3.5559 16 6 -0.0398 -6.3285 3.9178 17 1 -1.0303 -5.9050 3.9956 18 6 0.1615 -7.6892 4.1754 19 7 1.3751 -8.1536 4.3278 20 14 -1.3025 -8.8427 4.3014 21 1 -1.6128 -9.3971 2.9593 22 1 -0.9792 -9.9529 5.2330 23 1 -2.4793 -8.0947 4.8123 24 6 2.1752 -6.0648 2.9149 25 6 3.2343 -5.2557 2.5665 26 17 4.6209 -5.9385 1.7760 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7211 -1.5952 -1.2329 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2618 2.1369 33 1 3.8533 0.4369 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 5.0807 -0.1771 3.9492 36 1 3.3458 0.1917 3.7979 37 1 3.8701 -1.3089 4.5988 38 1 2.0772 -2.2804 3.6894 39 1 0.1703 -3.6912 4.3251 40 1 1.5147 -9.0967 4.5059 41 1 2.2058 -7.1221 2.6970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451250894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:23 Heat of formation + Delta-G solvation = -146.657577 kcal Electronic energy + Delta-G solvation = -27096.211429 eV Core-core repulsion = 23127.366181 eV Total energy + Delta-G solvation = -3968.845248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.64950 -39.07252 -38.11808 -37.52183 -37.08545 -36.75603 -35.79340 -32.86559 -32.07812 -31.27916 -30.09287 -27.76929 -26.99369 -24.14387 -23.52561 -23.01983 -22.19000 -19.89772 -19.59580 -18.82020 -18.11979 -17.37300 -17.35185 -17.08044 -16.59534 -16.22062 -15.88496 -15.58018 -15.27258 -14.90516 -14.67948 -14.41807 -14.33442 -14.20189 -14.11307 -13.67849 -13.50834 -13.32148 -13.11059 -13.02582 -13.00111 -12.82754 -12.74880 -12.65719 -12.42232 -12.33114 -12.15020 -12.00715 -11.85984 -11.70199 -11.58045 -11.35768 -11.24492 -10.96441 -9.97218 -9.83661 -9.52374 -8.88251 -6.73030 -0.42311 0.29354 0.83121 1.17155 1.36340 1.42917 1.52107 2.07777 2.10082 2.41153 2.80586 3.32730 3.54182 3.71758 3.75481 4.02023 4.13741 4.20606 4.23100 4.50159 4.57244 4.61565 4.69194 4.75690 4.78497 4.81603 4.89752 4.98206 4.99374 5.05008 5.08024 5.19147 5.30961 5.32124 5.40255 5.41543 5.50769 5.71056 5.81533 5.98652 6.32990 6.58753 6.64935 6.85877 8.04872 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.004281 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.904043 B = 6538.573065 C = 7750.354183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 H 0.115 0.885 4 O -0.584 6.584 5 C -0.176 4.176 6 C 0.116 3.884 7 N -0.996 5.996 8 C 0.078 3.922 9 S 2.708 3.292 10 O -1.004 7.004 11 O -0.987 6.987 12 C -0.799 4.799 13 C 0.010 3.990 14 C -0.241 4.241 15 C 0.114 3.886 16 C -0.451 4.451 17 H 0.104 0.896 18 C 0.029 3.971 19 N -0.802 5.802 20 Si 0.995 3.005 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.247 1.247 24 C -0.187 4.187 25 C 0.056 3.944 26 Cl -0.105 7.105 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.383 0.617 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.149 0.851 39 H 0.129 0.871 40 H 0.298 0.702 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 13.429 -2.022 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.046 3.954 3 H 0.132 0.868 4 O -0.391 6.391 5 C -0.216 4.216 6 C -0.009 4.009 7 N -0.837 5.837 8 C -0.066 4.066 9 S 2.801 3.199 10 O -0.994 6.994 11 O -0.977 6.977 12 C -0.891 4.891 13 C -0.010 4.010 14 C -0.261 4.261 15 C 0.110 3.890 16 C -0.477 4.477 17 H 0.122 0.878 18 C -0.190 4.190 19 N -0.425 5.425 20 Si 0.814 3.186 21 H -0.186 1.186 22 H -0.193 1.193 23 H -0.170 1.170 24 C -0.208 4.208 25 C 0.028 3.972 26 Cl -0.076 7.076 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.232 0.768 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.167 0.833 39 H 0.147 0.853 40 H 0.110 0.890 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.966 13.480 -2.355 14.002 hybrid contribution -0.964 -1.984 0.413 2.245 sum -3.930 11.496 -1.941 12.303 Atomic orbital electron populations 1.22465 0.95588 1.02554 1.03347 1.21958 0.93461 0.96832 0.83109 0.86761 1.86510 1.77823 1.30087 1.44727 1.22865 0.96156 1.01819 1.00742 1.21557 0.94175 0.99523 0.85600 1.57200 1.81596 1.28212 1.16671 1.21851 1.04246 0.98731 0.81811 1.01049 0.73561 0.72691 0.72558 1.93477 1.58886 1.86102 1.60983 1.93480 1.84832 1.84864 1.34552 1.29560 1.22528 1.05772 1.31225 1.20471 0.90370 0.98965 0.91156 1.21393 1.00958 0.94025 1.09698 1.18098 0.91565 0.93085 0.86224 1.20284 0.96244 0.93733 1.37480 0.87776 1.27102 1.00210 1.00511 0.91155 1.69840 1.24677 1.17834 1.30100 0.84987 0.77312 0.76896 0.79432 1.18582 1.19317 1.16980 1.21317 0.95042 0.99545 1.04900 1.20273 0.88301 0.92448 0.96210 1.98312 1.43442 1.86098 1.79751 0.90121 0.91671 0.93011 0.76803 0.92773 0.88149 0.86834 0.90473 0.91512 0.86660 0.91908 0.83335 0.85289 0.89031 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.54 71.98 0.69 -2.15 16 2 C 0.11 1.87 3.59 30.60 0.11 1.98 16 3 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 4 O -0.58 -13.47 12.87 -148.98 -1.92 -15.38 16 5 C -0.18 -3.52 5.20 30.59 0.16 -3.36 16 6 C 0.12 2.64 5.52 86.38 0.48 3.12 16 7 N -1.00 -27.43 2.39 -539.12 -1.29 -28.72 16 8 C 0.08 1.60 9.42 127.77 1.20 2.80 16 9 S 2.71 108.51 4.79 -56.49 -0.27 108.24 16 10 O -1.00 -45.77 17.35 -128.00 -2.22 -47.99 16 11 O -0.99 -43.42 15.19 -128.00 -1.94 -45.36 16 12 C -0.80 -35.12 5.86 22.48 0.13 -34.98 16 13 C 0.01 0.37 9.01 22.21 0.20 0.57 16 14 C -0.24 -10.12 9.79 22.73 0.22 -9.90 16 15 C 0.11 5.58 5.57 -21.29 -0.12 5.46 16 16 C -0.45 -21.00 9.07 23.46 0.21 -20.79 16 17 H 0.10 4.41 7.88 -2.91 -0.02 4.38 16 18 C 0.03 1.31 5.23 85.26 0.45 1.75 16 19 N -0.80 -38.61 10.82 21.83 0.24 -38.37 16 20 Si 0.99 33.25 29.58 68.60 2.03 35.28 16 21 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 22 H -0.27 -8.73 7.11 99.48 0.71 -8.02 16 23 H -0.25 -7.74 7.11 99.48 0.71 -7.04 16 24 C -0.19 -9.64 8.45 22.75 0.19 -9.45 16 25 C 0.06 2.77 6.29 22.27 0.14 2.91 16 26 Cl -0.10 -4.95 26.80 -2.72 -0.07 -5.02 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.38 7.85 9.05 -74.06 -0.67 7.18 16 31 H 0.05 1.37 7.61 -2.39 -0.02 1.35 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.79 8.11 -2.39 -0.02 1.77 16 34 H 0.08 2.16 6.56 -2.39 -0.02 2.14 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.11 1.39 8.04 -2.39 -0.02 1.37 16 37 H 0.06 1.41 7.71 -2.39 -0.02 1.40 16 38 H 0.15 4.30 6.16 -2.91 -0.02 4.29 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 41 H 0.12 6.44 6.15 -2.91 -0.02 6.42 16 Total: -1.00 -67.00 366.10 -0.99 -68.00 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.39 Total: 31.36 kcal Atomic # 6 Polarization: -66.09 SS G_CDS: 4.06 Total: -62.03 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.05 Total: -67.09 kcal Atomic # 8 Polarization: -102.65 SS G_CDS: -6.08 Total: -108.73 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.27 Total: 108.24 kcal Atomic # 17 Polarization: -4.95 SS G_CDS: -0.07 Total: -5.02 kcal Total: -67.00 -0.99 -68.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451250894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.661 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds