Wall clock time and date at job start Wed Apr 1 2020 04:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47071 * 2 1 4 4 C 1.42895 * 114.00248 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47368 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47171 * 64.99928 * 5 4 3 7 7 C 1.46498 * 120.00187 * 274.46279 * 6 5 4 8 8 S 1.65606 * 119.99776 * 94.45903 * 6 5 4 9 9 O 1.42097 * 106.40305 * 329.85600 * 8 6 5 10 10 O 1.42101 * 106.40060 * 196.93351 * 8 6 5 11 11 C 1.76196 * 107.21543 * 83.39434 * 8 6 5 12 12 C 1.38633 * 119.75732 * 246.22533 * 11 8 6 13 13 C 1.37605 * 120.26381 * 180.29895 * 12 11 8 14 14 C 1.40744 * 119.77062 * 359.72762 * 13 12 11 15 15 C 1.41393 * 120.23624 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00328 * 26.15224 * 15 14 13 17 17 C 1.39944 * 119.99879 * 206.14994 * 15 14 13 18 18 N 1.30827 * 120.00109 * 18.47395 * 17 15 14 19 19 Si 1.86801 * 120.00038 * 198.47106 * 17 15 14 20 20 H 1.48497 * 109.47355 * 60.00290 * 19 17 15 21 21 H 1.48503 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47318 * 300.00087 * 19 17 15 23 23 C 1.40682 * 119.52106 * 359.97438 * 14 13 12 24 24 C 1.37753 * 119.73593 * 0.02562 * 23 14 13 25 25 Cl 1.73596 * 119.88914 * 179.97438 * 24 23 14 26 26 H 1.08999 * 109.47685 * 300.00181 * 1 2 3 27 27 H 1.09008 * 109.46987 * 60.00462 * 1 2 3 28 28 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47259 * 240.00027 * 2 1 3 30 30 H 1.09000 * 109.47306 * 119.99432 * 2 1 3 31 31 H 1.09000 * 109.47101 * 59.99934 * 4 3 2 32 32 H 1.09002 * 109.47519 * 299.99869 * 4 3 2 33 33 H 1.08997 * 109.47583 * 305.00042 * 5 4 3 34 34 H 1.09008 * 109.47506 * 184.99773 * 5 4 3 35 35 H 1.08990 * 109.47016 * 269.99879 * 7 6 5 36 36 H 1.09008 * 109.46766 * 30.00162 * 7 6 5 37 37 H 1.09007 * 109.47173 * 149.99564 * 7 6 5 38 38 H 1.08000 * 119.87015 * 0.02562 * 12 11 8 39 39 H 1.08002 * 120.11771 * 179.70683 * 13 12 11 40 40 H 0.96998 * 120.00135 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.12564 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 3.3866 3.5615 1.2511 7 6 2.0225 4.0820 1.3714 8 16 4.4328 3.6774 2.5296 9 8 5.3114 2.5650 2.4312 10 8 3.6366 3.9399 3.6770 11 6 5.4183 5.1145 2.2685 12 6 6.7779 4.9827 2.0319 13 6 7.5585 6.0983 1.8327 14 6 6.9710 7.3769 1.8639 15 6 7.7637 8.5299 1.6599 16 1 8.6752 8.4637 1.0844 17 6 7.3671 9.7568 2.2037 18 7 6.4940 9.7892 3.1775 19 14 8.0843 11.3485 1.5391 20 1 7.7584 11.4737 0.0958 21 1 7.5063 12.4989 2.2792 22 1 9.5589 11.3382 1.7145 23 6 5.5893 7.4994 2.0985 24 6 4.8268 6.3692 2.2954 25 17 3.1216 6.5157 2.5858 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.8339 0.9765 -0.8891 32 1 3.8333 0.9768 0.8908 33 1 3.3499 3.4410 -0.8424 34 1 4.9082 3.0256 -0.0892 35 1 2.0028 5.1256 1.0575 36 1 1.3541 3.4992 0.7375 37 1 1.6955 4.0083 2.4087 38 1 7.2271 4.0009 2.0083 39 1 8.6183 5.9932 1.6533 40 1 6.2189 10.6396 3.5541 41 1 5.1283 8.4758 2.1241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451382365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:21 Heat of formation + Delta-G solvation = -114.250231 kcal Electronic energy + Delta-G solvation = -26708.267628 eV Core-core repulsion = 22740.827668 eV Total energy + Delta-G solvation = -3967.439961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.26030 -37.85116 -36.55395 -35.79652 -35.52977 -35.06777 -34.09117 -31.60682 -30.32724 -29.46920 -29.17561 -26.03153 -25.39009 -22.86463 -22.39203 -21.72582 -21.30044 -18.40056 -17.83065 -17.38413 -16.72505 -16.42536 -16.17632 -15.73556 -15.39809 -14.82102 -14.48996 -14.40463 -13.75037 -13.48705 -13.30430 -13.12741 -12.94504 -12.75625 -12.61423 -12.39399 -12.21531 -11.97407 -11.85435 -11.66747 -11.53449 -11.50725 -11.26155 -11.25920 -11.13044 -10.92910 -10.88055 -10.56980 -10.42826 -10.32261 -10.07431 -9.61870 -9.59239 -9.47366 -8.61708 -8.08898 -7.70841 -7.25926 -4.94123 1.20350 2.05706 2.64178 2.81767 2.85026 2.88350 3.01209 3.55851 3.59290 3.69301 4.10279 4.50057 4.91303 5.01036 5.02005 5.06860 5.19727 5.21746 5.30073 5.40681 5.46708 5.52830 5.76459 5.80257 5.89631 5.94238 5.97695 6.06783 6.29461 6.36325 6.40305 6.55621 6.65808 6.79672 6.98490 7.01378 7.17046 7.20694 7.33630 7.56173 7.76135 8.07502 8.33759 8.40648 9.65642 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.003135 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.795012 B = 8930.078903 C = 9215.545626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.383 6.383 4 C 0.041 3.959 5 C 0.134 3.866 6 N -0.996 5.996 7 C 0.090 3.910 8 S 2.694 3.306 9 O -0.986 6.986 10 O -0.966 6.966 11 C -0.794 4.794 12 C 0.009 3.991 13 C -0.236 4.236 14 C 0.144 3.856 15 C -0.427 4.427 16 H 0.093 0.907 17 C 0.070 3.930 18 N -0.757 5.757 19 Si 0.920 3.080 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.260 1.260 23 C -0.169 4.169 24 C 0.077 3.923 25 Cl -0.098 7.098 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.294 0.706 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 -8.846 -7.119 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.302 6.302 4 C -0.037 4.037 5 C 0.007 3.993 6 N -0.832 5.832 7 C -0.055 4.055 8 S 2.791 3.209 9 O -0.976 6.976 10 O -0.956 6.956 11 C -0.888 4.888 12 C -0.012 4.012 13 C -0.257 4.257 14 C 0.140 3.860 15 C -0.454 4.454 16 H 0.111 0.889 17 C -0.154 4.154 18 N -0.378 5.378 19 Si 0.742 3.258 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.189 4.189 24 C 0.048 3.952 25 Cl -0.069 7.069 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.940 -9.106 -6.207 13.023 hybrid contribution 0.589 1.195 -0.502 1.423 sum -6.351 -7.911 -6.709 12.163 Atomic orbital electron populations 1.21733 0.93959 1.01960 1.03112 1.22436 0.95439 0.84437 0.99871 1.87893 1.21212 1.25715 1.95415 1.23134 0.81365 0.98258 1.00956 1.21191 1.00044 0.90636 0.87396 1.57373 1.23984 1.73130 1.28683 1.21678 0.81974 0.98753 1.03113 1.01395 0.72568 0.74092 0.72818 1.93454 1.66287 1.51224 1.86671 1.93525 1.69373 1.86345 1.46369 1.29171 1.07820 1.13367 1.38465 1.20192 0.90709 0.98185 0.92068 1.21095 0.98413 0.92538 1.13649 1.17708 0.91031 0.92430 0.84873 1.19926 1.07158 0.91861 1.26431 0.88919 1.26193 0.94019 1.02097 0.93047 1.69800 1.22676 1.30133 1.15222 0.86148 0.80327 0.78857 0.80424 1.18221 1.19762 1.18417 1.21204 0.93479 0.96273 1.07989 1.20035 0.82181 0.94203 0.98738 1.98312 1.15903 1.98227 1.94499 0.91780 0.91973 0.91420 0.93704 0.93561 0.92582 0.92235 0.89769 0.88730 0.92801 0.90565 0.90699 0.86552 0.87533 0.89494 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.56 6.66 37.16 0.25 0.80 16 3 O -0.38 -4.90 8.76 -35.23 -0.31 -5.21 16 4 C 0.04 0.52 6.28 37.16 0.23 0.75 16 5 C 0.13 1.83 5.76 -4.04 -0.02 1.81 16 6 N -1.00 -16.49 3.15 -121.75 -0.38 -16.88 16 7 C 0.09 1.38 8.80 59.85 0.53 1.91 16 8 S 2.69 54.52 5.04 -107.50 -0.54 53.98 16 9 O -0.99 -20.58 15.92 -57.17 -0.91 -21.49 16 10 O -0.97 -21.74 14.90 -57.17 -0.85 -22.59 16 11 C -0.79 -17.65 5.94 -39.25 -0.23 -17.88 16 12 C 0.01 0.19 9.52 -39.67 -0.38 -0.19 16 13 C -0.24 -5.36 9.79 -38.87 -0.38 -5.74 16 14 C 0.14 3.51 5.55 -106.83 -0.59 2.92 16 15 C -0.43 -10.00 9.04 -37.74 -0.34 -10.35 16 16 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.56 5.11 -17.34 -0.09 1.47 16 18 N -0.76 -17.70 11.12 55.55 0.62 -17.08 16 19 Si 0.92 16.39 29.60 -169.99 -5.03 11.36 16 20 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 23 C -0.17 -4.13 8.46 -38.84 -0.33 -4.46 16 24 C 0.08 1.78 6.29 -39.57 -0.25 1.53 16 25 Cl -0.10 -2.02 22.95 -51.86 -1.19 -3.21 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.09 1.25 7.81 -51.92 -0.41 0.84 16 35 H 0.05 0.82 6.19 -51.93 -0.32 0.50 16 36 H 0.08 1.03 6.72 -51.92 -0.35 0.68 16 37 H 0.07 1.21 7.00 -51.93 -0.36 0.85 16 38 H 0.12 2.29 7.31 -52.49 -0.38 1.91 16 39 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 41 H 0.13 3.23 6.32 -52.49 -0.33 2.90 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -28.51 360.71 -9.88 -38.40 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.49 Total: 5.61 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -1.23 Total: -28.32 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.23 Total: -33.96 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -2.07 Total: -49.30 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Atomic # 16 Polarization: 54.52 SS G_CDS: -0.54 Total: 53.98 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -1.19 Total: -3.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.51 -9.88 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451382365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.852 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds