Wall clock time and date at job start Wed Apr 1 2020 04:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47071 * 2 1 4 4 C 1.42895 * 114.00248 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47368 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47171 * 64.99928 * 5 4 3 7 7 C 1.46498 * 120.00187 * 274.46279 * 6 5 4 8 8 S 1.65606 * 119.99776 * 94.45903 * 6 5 4 9 9 O 1.42097 * 106.40305 * 329.85600 * 8 6 5 10 10 O 1.42101 * 106.40060 * 196.93351 * 8 6 5 11 11 C 1.76196 * 107.21543 * 83.39434 * 8 6 5 12 12 C 1.38633 * 119.75732 * 246.22533 * 11 8 6 13 13 C 1.37605 * 120.26381 * 180.29895 * 12 11 8 14 14 C 1.40744 * 119.77062 * 359.72762 * 13 12 11 15 15 C 1.41393 * 120.23624 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00328 * 26.15224 * 15 14 13 17 17 C 1.39944 * 119.99879 * 206.14994 * 15 14 13 18 18 N 1.30827 * 120.00109 * 18.47395 * 17 15 14 19 19 Si 1.86801 * 120.00038 * 198.47106 * 17 15 14 20 20 H 1.48497 * 109.47355 * 60.00290 * 19 17 15 21 21 H 1.48503 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47318 * 300.00087 * 19 17 15 23 23 C 1.40682 * 119.52106 * 359.97438 * 14 13 12 24 24 C 1.37753 * 119.73593 * 0.02562 * 23 14 13 25 25 Cl 1.73596 * 119.88914 * 179.97438 * 24 23 14 26 26 H 1.08999 * 109.47685 * 300.00181 * 1 2 3 27 27 H 1.09008 * 109.46987 * 60.00462 * 1 2 3 28 28 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47259 * 240.00027 * 2 1 3 30 30 H 1.09000 * 109.47306 * 119.99432 * 2 1 3 31 31 H 1.09000 * 109.47101 * 59.99934 * 4 3 2 32 32 H 1.09002 * 109.47519 * 299.99869 * 4 3 2 33 33 H 1.08997 * 109.47583 * 305.00042 * 5 4 3 34 34 H 1.09008 * 109.47506 * 184.99773 * 5 4 3 35 35 H 1.08990 * 109.47016 * 269.99879 * 7 6 5 36 36 H 1.09008 * 109.46766 * 30.00162 * 7 6 5 37 37 H 1.09007 * 109.47173 * 149.99564 * 7 6 5 38 38 H 1.08000 * 119.87015 * 0.02562 * 12 11 8 39 39 H 1.08002 * 120.11771 * 179.70683 * 13 12 11 40 40 H 0.96998 * 120.00135 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.12564 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 3.3866 3.5615 1.2511 7 6 2.0225 4.0820 1.3714 8 16 4.4328 3.6774 2.5296 9 8 5.3114 2.5650 2.4312 10 8 3.6366 3.9399 3.6770 11 6 5.4183 5.1145 2.2685 12 6 6.7779 4.9827 2.0319 13 6 7.5585 6.0983 1.8327 14 6 6.9710 7.3769 1.8639 15 6 7.7637 8.5299 1.6599 16 1 8.6752 8.4637 1.0844 17 6 7.3671 9.7568 2.2037 18 7 6.4940 9.7892 3.1775 19 14 8.0843 11.3485 1.5391 20 1 7.7584 11.4737 0.0958 21 1 7.5063 12.4989 2.2792 22 1 9.5589 11.3382 1.7145 23 6 5.5893 7.4994 2.0985 24 6 4.8268 6.3692 2.2954 25 17 3.1216 6.5157 2.5858 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.8339 0.9765 -0.8891 32 1 3.8333 0.9768 0.8908 33 1 3.3499 3.4410 -0.8424 34 1 4.9082 3.0256 -0.0892 35 1 2.0028 5.1256 1.0575 36 1 1.3541 3.4992 0.7375 37 1 1.6955 4.0083 2.4087 38 1 7.2271 4.0009 2.0083 39 1 8.6183 5.9932 1.6533 40 1 6.2189 10.6396 3.5541 41 1 5.1283 8.4758 2.1241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451382365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:20 Heat of formation + Delta-G solvation = -131.206690 kcal Electronic energy + Delta-G solvation = -26709.002916 eV Core-core repulsion = 22740.827668 eV Total energy + Delta-G solvation = -3968.175248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59989 -39.21813 -38.22263 -37.36346 -36.90124 -36.71791 -35.80174 -32.44121 -32.07971 -31.23972 -30.20334 -27.76780 -26.63183 -23.67421 -23.59036 -23.34728 -23.04153 -19.91310 -19.57255 -18.79101 -18.31784 -17.50125 -17.34208 -17.26506 -16.70741 -16.21704 -15.89314 -15.77866 -15.28677 -15.05960 -14.63716 -14.48459 -14.26971 -14.11197 -13.94961 -13.81375 -13.57548 -13.34028 -13.11537 -13.08500 -12.96414 -12.91571 -12.70467 -12.56778 -12.49476 -12.13501 -12.11450 -12.03390 -11.91704 -11.87672 -11.79864 -11.27737 -11.15920 -10.48860 -9.99418 -9.80738 -9.46903 -8.93496 -6.72432 -0.38045 0.31273 0.84669 1.24682 1.36258 1.43945 1.51463 2.08451 2.13353 2.44400 2.79110 2.88286 3.35213 3.55505 3.86675 4.12156 4.21074 4.21610 4.35384 4.44093 4.49969 4.54426 4.59756 4.67556 4.75631 4.81917 4.90512 4.92274 4.95203 5.05378 5.08352 5.09583 5.16446 5.23882 5.30991 5.40149 5.52515 5.72481 5.80430 6.00518 6.31357 6.33009 6.57686 6.63807 8.01517 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.003135 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.795012 B = 8930.078903 C = 9215.545626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.399 6.399 4 C 0.043 3.957 5 C 0.122 3.878 6 N -0.990 5.990 7 C 0.091 3.909 8 S 2.711 3.289 9 O -0.992 6.992 10 O -0.992 6.992 11 C -0.806 4.806 12 C 0.005 3.995 13 C -0.248 4.248 14 C 0.117 3.883 15 C -0.451 4.451 16 H 0.103 0.897 17 C 0.033 3.967 18 N -0.792 5.792 19 Si 0.993 3.007 20 H -0.254 1.254 21 H -0.267 1.267 22 H -0.252 1.252 23 C -0.191 4.191 24 C 0.068 3.932 25 Cl -0.081 7.081 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.301 0.699 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -9.293 -8.591 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.319 6.319 4 C -0.035 4.035 5 C -0.003 4.003 6 N -0.828 5.828 7 C -0.054 4.054 8 S 2.806 3.194 9 O -0.983 6.983 10 O -0.982 6.982 11 C -0.899 4.899 12 C -0.015 4.015 13 C -0.268 4.268 14 C 0.112 3.888 15 C -0.477 4.477 16 H 0.121 0.879 17 C -0.187 4.187 18 N -0.414 5.414 19 Si 0.812 3.188 20 H -0.178 1.178 21 H -0.191 1.191 22 H -0.176 1.176 23 C -0.212 4.212 24 C 0.039 3.961 25 Cl -0.053 7.053 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.019 -9.558 -7.677 14.127 hybrid contribution 0.519 1.212 -0.055 1.320 sum -6.500 -8.346 -7.732 13.103 Atomic orbital electron populations 1.21746 0.92876 1.03211 1.02662 1.22656 0.96379 0.83390 1.00565 1.87855 1.21102 1.27408 1.95548 1.23082 0.81653 0.97277 1.01533 1.21530 1.00677 0.91588 0.86470 1.57137 1.23577 1.73126 1.29002 1.21745 0.81548 0.99156 1.02979 1.00866 0.72325 0.73259 0.72973 1.93435 1.66892 1.50966 1.86993 1.93485 1.69780 1.86521 1.48416 1.29590 1.08578 1.14012 1.37691 1.20476 0.90698 0.98926 0.91394 1.21349 0.99427 0.92281 1.13777 1.18075 0.91397 0.93670 0.85611 1.20269 1.07790 0.92566 1.27048 0.87900 1.27091 0.93968 1.05069 0.92605 1.69848 1.23822 1.31437 1.16294 0.85062 0.79722 0.74410 0.79635 1.17839 1.19138 1.17598 1.21187 0.94005 0.96155 1.09855 1.20208 0.83227 0.94333 0.98287 1.98305 1.14319 1.98246 1.94390 0.92804 0.91798 0.89376 0.91976 0.93882 0.89659 0.93966 0.87660 0.88330 0.92813 0.88332 0.91784 0.84532 0.85858 0.88751 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.40 -9.39 8.76 -148.98 -1.31 -10.69 16 4 C 0.04 0.99 6.28 71.98 0.45 1.44 16 5 C 0.12 3.12 5.76 86.38 0.50 3.62 16 6 N -0.99 -31.67 3.15 -539.11 -1.70 -33.37 16 7 C 0.09 2.67 8.80 127.77 1.12 3.80 16 8 S 2.71 108.45 5.04 -56.49 -0.28 108.16 16 9 O -0.99 -40.61 15.92 -128.00 -2.04 -42.65 16 10 O -0.99 -44.64 14.90 -128.00 -1.91 -46.55 16 11 C -0.81 -35.88 5.94 22.48 0.13 -35.74 16 12 C 0.00 0.21 9.52 22.21 0.21 0.43 16 13 C -0.25 -11.30 9.79 22.73 0.22 -11.07 16 14 C 0.12 5.80 5.55 -21.29 -0.12 5.68 16 15 C -0.45 -21.29 9.04 23.46 0.21 -21.08 16 16 H 0.10 4.47 7.91 -2.91 -0.02 4.44 16 17 C 0.03 1.48 5.11 85.26 0.44 1.92 16 18 N -0.79 -37.63 11.12 21.83 0.24 -37.39 16 19 Si 0.99 33.00 29.60 68.60 2.03 35.03 16 20 H -0.25 -8.25 7.11 99.48 0.71 -7.55 16 21 H -0.27 -8.53 7.11 99.48 0.71 -7.82 16 22 H -0.25 -8.02 7.11 99.48 0.71 -7.32 16 23 C -0.19 -9.60 8.46 22.75 0.19 -9.41 16 24 C 0.07 3.18 6.29 22.27 0.14 3.32 16 25 Cl -0.08 -3.37 22.95 -2.72 -0.06 -3.43 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.12 7.89 -2.39 -0.02 1.10 16 33 H 0.11 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.10 2.43 7.81 -2.38 -0.02 2.41 16 35 H 0.05 1.58 6.19 -2.39 -0.01 1.56 16 36 H 0.10 2.48 6.72 -2.38 -0.02 2.46 16 37 H 0.06 2.04 7.00 -2.38 -0.02 2.02 16 38 H 0.14 5.25 7.31 -2.91 -0.02 5.23 16 39 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.30 12.82 8.30 -92.71 -0.77 12.05 16 41 H 0.12 6.04 6.32 -2.91 -0.02 6.02 16 Total: -1.00 -61.20 360.71 0.74 -60.46 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 1.04 Total: 27.70 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 4.72 Total: -57.27 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.46 Total: -70.76 kcal Atomic # 8 Polarization: -94.63 SS G_CDS: -5.25 Total: -99.88 kcal Atomic # 14 Polarization: 33.00 SS G_CDS: 2.03 Total: 35.03 kcal Atomic # 16 Polarization: 108.45 SS G_CDS: -0.28 Total: 108.16 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.06 Total: -3.43 kcal Total: -61.20 0.74 -60.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451382365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.750 kcal (2) G-P(sol) polarization free energy of solvation -61.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds