Wall clock time and date at job start Wed Apr 1 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47244 * 2 1 4 4 O 1.42904 * 109.47057 * 119.99641 * 2 1 3 5 5 C 1.52997 * 109.46968 * 239.99647 * 2 1 3 6 6 C 1.53004 * 109.47058 * 175.00378 * 5 2 1 7 7 H 1.09007 * 109.46879 * 305.00128 * 6 5 2 8 8 C 1.53002 * 109.47135 * 185.00392 * 6 5 2 9 9 N 1.46501 * 109.47471 * 64.99844 * 6 5 2 10 10 S 1.65601 * 120.00211 * 215.85145 * 9 6 5 11 11 O 1.42099 * 106.39840 * 48.03755 * 10 9 6 12 12 O 1.42098 * 106.39937 * 180.96224 * 10 9 6 13 13 C 1.76202 * 107.21558 * 294.49910 * 10 9 6 14 14 C 1.38633 * 119.75304 * 115.46210 * 13 10 9 15 15 C 1.37611 * 120.25796 * 179.75944 * 14 13 10 16 16 C 1.40739 * 119.77062 * 0.51206 * 15 14 13 17 17 C 1.41396 * 120.23675 * 179.76400 * 16 15 14 18 18 H 1.08007 * 120.00140 * 28.51194 * 17 16 15 19 19 C 1.39940 * 120.00314 * 208.51268 * 17 16 15 20 20 N 1.30832 * 119.99903 * 11.48779 * 19 17 16 21 21 Si 1.86800 * 120.00215 * 191.49682 * 19 17 16 22 22 H 1.48509 * 109.47214 * 59.99664 * 21 19 17 23 23 H 1.48502 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46935 * 299.99485 * 21 19 17 25 25 C 1.40673 * 119.52685 * 359.74483 * 16 15 14 26 26 C 1.37762 * 119.73384 * 0.02562 * 25 16 15 27 27 Cl 1.73599 * 119.89112 * 179.97438 * 26 25 16 28 28 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46925 * 300.00373 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99920 * 1 2 3 31 31 H 0.96696 * 114.00362 * 300.00373 * 4 2 1 32 32 H 1.08998 * 109.47261 * 55.00234 * 5 2 1 33 33 H 1.08994 * 109.47372 * 295.00115 * 5 2 1 34 34 H 1.09005 * 109.46918 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46946 * 299.99527 * 8 6 5 36 36 H 1.08996 * 109.47415 * 59.99690 * 8 6 5 37 37 H 0.97001 * 119.99058 * 35.85033 * 9 6 5 38 38 H 1.07995 * 119.87130 * 359.97438 * 14 13 10 39 39 H 1.07996 * 120.11524 * 180.23069 * 15 14 13 40 40 H 0.96995 * 119.99880 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.13808 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0399 -0.7213 -1.2492 6 6 3.5648 -0.6134 -1.3136 7 1 3.8571 0.4357 -1.2677 8 6 4.0645 -1.2252 -2.6240 9 7 4.1537 -1.3343 -0.1823 10 16 5.5200 -0.7518 0.5499 11 8 5.2896 0.6300 0.7879 12 8 5.8473 -1.6741 1.5803 13 6 6.8240 -0.8426 -0.6316 14 6 7.4190 0.3225 -1.0904 15 6 8.4416 0.2635 -2.0095 16 6 8.8761 -0.9851 -2.4922 17 6 9.9225 -1.0570 -3.4403 18 1 10.6815 -0.2890 -3.4662 19 6 9.9749 -2.1231 -4.3453 20 7 8.9499 -2.9266 -4.4695 21 14 11.5084 -2.3992 -5.3756 22 1 12.6710 -2.6305 -4.4810 23 1 11.3119 -3.5850 -6.2478 24 1 11.7616 -1.2020 -6.2169 25 6 8.2621 -2.1611 -2.0243 26 6 7.2434 -2.0791 -1.1006 27 17 6.4824 -3.5277 -0.5209 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7210 -0.2701 1.9980 32 1 1.6054 -0.2619 -2.1369 33 1 1.7516 -1.7715 -1.2055 34 1 5.1508 -1.1479 -2.6701 35 1 3.7722 -2.2742 -2.6699 36 1 3.6264 -0.6888 -3.4657 37 1 3.7431 -2.1528 0.1378 38 1 7.0811 1.2800 -0.7226 39 1 8.9059 1.1723 -2.3625 40 1 8.9864 -3.6658 -5.0964 41 1 8.5880 -3.1245 -2.3878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451388155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:16 Heat of formation + Delta-G solvation = -134.800952 kcal Electronic energy + Delta-G solvation = -27214.175052 eV Core-core repulsion = 23245.843945 eV Total energy + Delta-G solvation = -3968.331107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.19665 -37.82865 -36.36430 -35.64593 -35.43626 -34.95583 -34.03200 -31.69097 -30.27522 -29.50181 -29.38060 -26.74765 -25.93838 -21.82746 -21.60905 -21.29693 -20.80412 -18.86104 -17.78645 -17.45833 -16.90390 -16.50156 -15.82813 -15.41844 -14.88052 -14.58387 -14.43735 -14.17100 -13.65002 -13.36786 -13.16619 -12.80727 -12.71505 -12.68463 -12.47528 -12.41493 -12.08767 -12.03790 -11.60209 -11.50810 -11.43112 -11.27069 -11.18776 -11.14483 -11.00354 -10.83980 -10.52630 -10.50886 -10.39873 -10.29230 -10.03292 -9.93741 -9.62591 -9.54088 -8.79324 -8.01608 -7.67982 -7.17073 -4.91595 1.40377 2.08423 2.67773 2.85440 2.87365 2.89924 3.06215 3.62240 3.83907 4.16006 4.31511 4.60574 4.70075 4.90665 5.12969 5.17928 5.30393 5.39210 5.43485 5.50863 5.64985 5.75082 5.90026 5.90380 5.93416 5.99893 6.13584 6.22180 6.41613 6.57829 6.63929 6.72533 6.73756 6.85178 7.03525 7.20298 7.37235 7.60498 7.67354 7.75373 7.80547 8.12447 8.39043 8.44248 9.72752 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.003591 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.879867 B = 7795.445849 C = 8022.573602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.057 0.943 4 O -0.557 6.557 5 C -0.116 4.116 6 C 0.159 3.841 7 H 0.085 0.915 8 C -0.175 4.175 9 N -1.097 6.097 10 S 2.704 3.296 11 O -0.991 6.991 12 O -0.974 6.974 13 C -0.789 4.789 14 C 0.007 3.993 15 C -0.234 4.234 16 C 0.145 3.855 17 C -0.431 4.431 18 H 0.090 0.910 19 C 0.069 3.931 20 N -0.768 5.768 21 Si 0.921 3.079 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.164 4.164 26 C 0.077 3.923 27 Cl -0.101 7.101 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.372 0.628 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.291 0.709 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 2.338 1.056 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.075 0.925 4 O -0.362 6.362 5 C -0.155 4.155 6 C 0.051 3.949 7 H 0.103 0.897 8 C -0.234 4.234 9 N -0.854 5.854 10 S 2.798 3.202 11 O -0.981 6.981 12 O -0.965 6.965 13 C -0.883 4.883 14 C -0.013 4.013 15 C -0.255 4.255 16 C 0.141 3.859 17 C -0.458 4.458 18 H 0.108 0.892 19 C -0.153 4.153 20 N -0.391 5.391 21 Si 0.745 3.255 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.185 1.185 25 C -0.185 4.185 26 C 0.049 3.951 27 Cl -0.072 7.072 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.218 0.782 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.247 0.753 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.969 2.082 1.314 11.242 hybrid contribution 0.358 -0.477 -0.775 0.978 sum -10.611 1.604 0.540 10.745 Atomic orbital electron populations 1.22536 0.97075 1.02539 1.02148 1.21791 0.91832 0.95756 0.86464 0.92481 1.86593 1.77013 1.57056 1.15521 1.21956 0.95430 1.02024 0.96133 1.20578 0.92412 0.96061 0.85835 0.89714 1.22367 1.03582 1.01248 0.96179 1.55360 1.44366 1.39041 1.46663 1.01014 0.72713 0.72775 0.73650 1.93442 1.85608 1.34165 1.84880 1.93531 1.83747 1.64384 1.54821 1.29297 1.28781 0.97525 1.32680 1.20204 0.93601 0.94742 0.92789 1.21149 1.02255 0.97041 1.05048 1.17717 0.89416 0.90375 0.88407 1.19900 1.08046 1.06486 1.11353 0.89155 1.26142 0.97621 0.94139 0.97372 1.69761 1.28620 1.12038 1.28636 0.86121 0.80956 0.79040 0.79427 1.18357 1.19847 1.18527 1.21314 0.98576 1.00134 0.98496 1.20037 0.95470 0.83876 0.95718 1.98318 1.81123 1.39683 1.88125 0.91975 0.92614 0.91810 0.78194 0.89678 0.90599 0.90621 0.92249 0.92286 0.75253 0.86609 0.87621 0.89771 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 9.53 37.16 0.35 -1.16 16 2 C 0.10 1.07 3.58 -26.73 -0.10 0.98 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 4 O -0.56 -6.73 11.41 -35.23 -0.40 -7.13 16 5 C -0.12 -1.28 4.62 -26.73 -0.12 -1.40 16 6 C 0.16 2.26 2.92 -67.93 -0.20 2.06 16 7 H 0.08 1.26 7.48 -51.92 -0.39 0.87 16 8 C -0.17 -2.57 9.52 37.16 0.35 -2.21 16 9 N -1.10 -17.87 3.68 -4.89 -0.02 -17.89 16 10 S 2.70 54.62 5.03 -107.50 -0.54 54.08 16 11 O -0.99 -21.15 16.26 -57.17 -0.93 -22.08 16 12 O -0.97 -22.03 16.52 -57.17 -0.94 -22.97 16 13 C -0.79 -17.36 4.93 -39.25 -0.19 -17.55 16 14 C 0.01 0.15 9.52 -39.66 -0.38 -0.23 16 15 C -0.23 -5.29 9.79 -38.87 -0.38 -5.67 16 16 C 0.14 3.52 5.55 -106.83 -0.59 2.93 16 17 C -0.43 -10.13 9.06 -37.74 -0.34 -10.47 16 18 H 0.09 1.99 7.87 -52.48 -0.41 1.58 16 19 C 0.07 1.54 5.24 -17.34 -0.09 1.45 16 20 N -0.77 -17.66 10.87 55.55 0.60 -17.05 16 21 Si 0.92 16.59 29.57 -169.99 -5.03 11.56 16 22 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 23 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 24 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 25 C -0.16 -4.00 8.44 -38.84 -0.33 -4.33 16 26 C 0.08 1.77 5.91 -39.57 -0.23 1.53 16 27 Cl -0.10 -2.10 26.40 -51.86 -1.37 -3.47 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.37 3.23 9.08 45.56 0.41 3.64 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.36 6.72 -51.93 -0.35 1.02 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.41 6.36 8.48 -34.48 -0.29 6.06 16 38 H 0.12 2.31 7.31 -52.49 -0.38 1.93 16 39 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.29 6.06 8.30 -40.82 -0.34 5.73 16 41 H 0.13 3.35 6.23 -52.49 -0.33 3.02 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -29.03 364.34 -10.06 -39.09 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -4.68 Total: 14.45 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: -2.25 Total: -34.09 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.59 Total: -34.94 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.28 Total: -52.18 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.54 Total: 54.08 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -1.37 Total: -3.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.03 -10.06 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451388155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.711 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds