Wall clock time and date at job start Wed Apr 1 2020 04:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00231 * 2 1 4 4 C 1.53002 * 109.47061 * 276.72984 * 3 2 1 5 5 C 1.52997 * 109.47080 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47400 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.47579 * 180.02562 * 6 5 4 8 8 S 1.65604 * 119.99734 * 180.02562 * 2 1 3 9 9 O 1.42105 * 106.39895 * 150.09551 * 8 2 1 10 10 O 1.42103 * 106.40403 * 17.17749 * 8 2 1 11 11 C 1.76193 * 107.21660 * 263.63509 * 8 2 1 12 12 C 1.38641 * 119.75799 * 248.20936 * 11 8 2 13 13 C 1.37607 * 120.25954 * 180.30241 * 12 11 8 14 14 C 1.40735 * 119.77406 * 359.71969 * 13 12 11 15 15 C 1.41398 * 120.23914 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99985 * 151.06371 * 15 14 13 17 17 C 1.39948 * 119.99708 * 331.05374 * 15 14 13 18 18 N 1.30831 * 119.99695 * 162.71174 * 17 15 14 19 19 Si 1.86799 * 120.00435 * 342.71973 * 17 15 14 20 20 H 1.48506 * 109.47315 * 95.25643 * 19 17 15 21 21 H 1.48497 * 109.47336 * 215.26300 * 19 17 15 22 22 H 1.48504 * 109.46722 * 335.26111 * 19 17 15 23 23 C 1.40681 * 119.52531 * 0.02562 * 14 13 12 24 24 C 1.37754 * 119.72822 * 359.97438 * 23 14 13 25 25 Cl 1.73602 * 119.88428 * 180.02562 * 24 23 14 26 26 H 1.09003 * 109.46488 * 269.99963 * 1 2 3 27 27 H 1.08996 * 109.46823 * 29.99610 * 1 2 3 28 28 H 1.08997 * 109.47305 * 150.00165 * 1 2 3 29 29 H 1.09004 * 109.46895 * 36.73017 * 3 2 1 30 30 H 1.09001 * 109.47329 * 156.72930 * 3 2 1 31 31 H 1.09004 * 109.47292 * 299.99789 * 4 3 2 32 32 H 1.09001 * 109.47094 * 59.99801 * 4 3 2 33 33 H 1.09003 * 109.47429 * 299.99813 * 5 4 3 34 34 H 1.09001 * 109.47227 * 59.99996 * 5 4 3 35 35 H 1.09004 * 109.47124 * 299.99996 * 6 5 4 36 36 H 1.09001 * 109.46941 * 59.99812 * 6 5 4 37 37 H 0.96695 * 113.99695 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.86773 * 0.02562 * 12 11 8 39 39 H 1.07998 * 120.11321 * 179.70765 * 13 12 11 40 40 H 0.96999 * 119.99309 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.13345 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3062 1.7948 -1.4326 5 6 3.0707 3.1201 -1.4325 6 6 3.1788 3.6467 -2.8649 7 8 3.8933 4.8842 -2.8650 8 16 2.2930 -1.4342 -0.0006 9 8 3.5170 -1.1905 -0.6802 10 8 1.3657 -2.4327 -0.4037 11 6 2.7153 -1.7933 1.6718 12 6 4.0428 -1.7551 2.0697 13 6 4.3849 -2.0398 3.3718 14 6 3.3810 -2.3651 4.3030 15 6 3.7214 -2.6589 5.6436 16 1 3.0179 -2.4533 6.4368 17 6 4.9698 -3.2163 5.9425 18 7 5.4264 -3.1787 7.1679 19 14 5.9843 -4.0136 4.5918 20 1 6.9555 -3.0271 4.0542 21 1 6.7183 -5.1792 5.1466 22 1 5.0855 -4.4684 3.5007 23 6 2.0364 -2.3960 3.8904 24 6 1.7166 -2.1075 2.5820 25 17 0.0586 -2.1437 2.0686 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6659 1.9951 0.6146 30 1 3.1968 1.1113 0.4060 31 1 2.8378 1.0684 -2.0472 32 1 1.3069 1.9522 -1.8386 33 1 2.5387 3.8465 -0.8181 34 1 4.0699 2.9632 -1.0264 35 1 3.7105 2.9205 -3.4798 36 1 2.1794 3.8037 -3.2707 37 1 3.9996 5.2769 -3.7422 38 1 4.8119 -1.5052 1.3539 39 1 5.4202 -2.0140 3.6781 40 1 6.2919 -3.5647 7.3750 41 1 1.2581 -2.6440 4.5969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451456448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:09 Heat of formation + Delta-G solvation = -124.354721 kcal Electronic energy + Delta-G solvation = -26434.700329 eV Core-core repulsion = 22466.822204 eV Total energy + Delta-G solvation = -3967.878124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.15455 -37.64790 -36.73335 -36.50958 -35.86444 -35.23354 -34.08369 -33.27807 -31.01777 -29.87658 -28.51671 -26.03217 -25.63107 -22.85982 -22.07758 -21.39807 -21.25257 -18.57849 -17.97283 -17.59254 -17.48722 -16.84110 -16.08902 -15.76536 -15.60778 -14.74670 -14.61546 -14.43419 -14.08089 -13.92123 -13.74009 -13.33683 -13.08286 -12.99269 -12.69719 -12.56332 -12.27710 -12.15063 -11.88480 -11.81166 -11.50706 -11.35448 -11.27365 -11.21265 -11.13257 -11.04658 -10.98760 -10.70155 -10.50234 -10.37174 -10.17541 -10.04949 -9.78530 -9.56567 -8.80188 -8.34807 -7.94231 -7.48202 -5.09514 1.02621 1.79203 2.28263 2.70523 2.83854 2.97449 3.05110 3.40339 3.64040 3.92258 4.00691 4.34658 4.74779 4.85407 4.88063 4.93675 5.00671 5.15089 5.25346 5.34882 5.52467 5.58522 5.66144 5.68316 5.70048 5.88815 5.97628 6.01995 6.05308 6.22067 6.26601 6.29342 6.31014 6.59646 6.79565 6.82091 6.93253 7.03484 7.37376 7.37822 7.53624 7.80199 8.10310 8.22604 9.49469 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003592 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.033130 B = 7792.426171 C = 8954.512283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.002 6.002 3 C 0.130 3.870 4 C -0.138 4.138 5 C -0.119 4.119 6 C 0.075 3.925 7 O -0.577 6.577 8 S 2.695 3.305 9 O -0.978 6.978 10 O -0.965 6.965 11 C -0.798 4.798 12 C 0.023 3.977 13 C -0.252 4.252 14 C 0.118 3.882 15 C -0.400 4.400 16 H 0.103 0.897 17 C 0.079 3.921 18 N -0.770 5.770 19 Si 0.915 3.085 20 H -0.261 1.261 21 H -0.283 1.283 22 H -0.237 1.237 23 C -0.207 4.207 24 C 0.094 3.906 25 Cl -0.092 7.092 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.378 0.622 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.297 0.703 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 8.803 -12.006 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.838 5.838 3 C 0.004 3.996 4 C -0.177 4.177 5 C -0.157 4.157 6 C -0.003 4.003 7 O -0.382 6.382 8 S 2.791 3.209 9 O -0.969 6.969 10 O -0.955 6.955 11 C -0.892 4.892 12 C 0.002 3.998 13 C -0.272 4.272 14 C 0.113 3.887 15 C -0.426 4.426 16 H 0.121 0.879 17 C -0.146 4.146 18 N -0.390 5.390 19 Si 0.739 3.261 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.160 1.160 23 C -0.228 4.228 24 C 0.066 3.934 25 Cl -0.064 7.064 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.224 0.776 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.434 8.139 -11.886 15.073 hybrid contribution 0.352 -0.097 -0.086 0.375 sum -4.081 8.042 -11.972 14.989 Atomic orbital electron populations 1.21649 0.78906 1.03028 1.02314 1.57506 1.14875 1.21287 1.90168 1.21147 0.96872 0.85363 0.96199 1.21967 1.00726 0.96550 0.98496 1.21446 1.01944 0.96495 0.95822 1.22217 0.94876 0.85246 0.97914 1.86484 1.78642 1.38465 1.34597 1.01444 0.72560 0.72273 0.74638 1.93482 1.45258 1.85231 1.72919 1.93533 1.63619 1.56179 1.82179 1.29246 0.99833 1.36765 1.23343 1.20228 0.92681 0.91335 0.95515 1.21113 0.98711 1.12971 0.94447 1.17752 0.90933 0.87262 0.92716 1.19888 0.99622 1.30397 0.92659 0.87931 1.26426 0.97079 0.93855 0.97200 1.69651 1.18344 1.29930 1.21057 0.86225 0.79933 0.78814 0.81105 1.18682 1.20957 1.15975 1.20928 0.96873 1.11619 0.93378 1.20005 0.82030 0.97261 0.94083 1.98329 1.20536 1.96672 1.90830 0.92401 0.91603 0.90208 0.90509 0.89937 0.90734 0.91512 0.91100 0.90712 0.93489 0.93781 0.77595 0.86058 0.87120 0.89236 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 9.05 59.85 0.54 1.64 16 2 N -1.00 -14.81 3.19 -121.76 -0.39 -15.20 16 3 C 0.13 1.64 5.34 -4.04 -0.02 1.61 16 4 C -0.14 -1.51 5.53 -26.73 -0.15 -1.66 16 5 C -0.12 -1.21 5.58 -26.73 -0.15 -1.36 16 6 C 0.08 0.68 7.05 37.16 0.26 0.94 16 7 O -0.58 -5.55 13.66 -35.23 -0.48 -6.03 16 8 S 2.69 50.60 5.06 -107.50 -0.54 50.05 16 9 O -0.98 -19.50 16.12 -57.17 -0.92 -20.42 16 10 O -0.96 -19.78 14.75 -57.17 -0.84 -20.62 16 11 C -0.80 -16.65 5.94 -39.25 -0.23 -16.89 16 12 C 0.02 0.48 9.52 -39.66 -0.38 0.10 16 13 C -0.25 -5.67 7.12 -38.87 -0.28 -5.94 16 14 C 0.12 2.75 5.14 -106.83 -0.55 2.20 16 15 C -0.40 -9.60 9.58 -37.74 -0.36 -9.96 16 16 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16 17 C 0.08 1.84 5.42 -17.34 -0.09 1.75 16 18 N -0.77 -18.02 13.93 55.55 0.77 -17.24 16 19 Si 0.91 18.80 24.46 -169.99 -4.16 14.65 16 20 H -0.26 -5.16 6.70 56.52 0.38 -4.78 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.24 -5.12 6.78 56.52 0.38 -4.73 16 23 C -0.21 -4.55 9.57 -38.84 -0.37 -4.93 16 24 C 0.09 1.98 6.29 -39.58 -0.25 1.73 16 25 Cl -0.09 -1.68 23.15 -51.86 -1.20 -2.88 16 26 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 27 H 0.07 0.63 8.00 -51.93 -0.42 0.22 16 28 H 0.08 1.07 7.00 -51.93 -0.36 0.70 16 29 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.08 1.10 7.73 -51.93 -0.40 0.70 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.38 1.82 9.12 45.56 0.42 2.23 16 38 H 0.12 2.35 7.31 -52.49 -0.38 1.96 16 39 H 0.11 2.39 4.54 -52.49 -0.24 2.16 16 40 H 0.30 6.20 8.30 -40.82 -0.34 5.86 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -28.63 357.49 -9.10 -37.73 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.70 Total: 5.33 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -2.03 Total: -30.76 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.39 Total: -32.44 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.25 Total: -47.07 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.16 Total: 14.65 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.54 Total: 50.05 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -1.20 Total: -2.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.63 -9.10 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.627 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds