Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00231 * 2 1 4 4 C 1.53002 * 109.47061 * 276.72984 * 3 2 1 5 5 C 1.52997 * 109.47080 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47400 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.47579 * 180.02562 * 6 5 4 8 8 S 1.65604 * 119.99734 * 180.02562 * 2 1 3 9 9 O 1.42105 * 106.39895 * 150.09551 * 8 2 1 10 10 O 1.42103 * 106.40403 * 17.17749 * 8 2 1 11 11 C 1.76193 * 107.21660 * 263.63509 * 8 2 1 12 12 C 1.38641 * 119.75799 * 248.20936 * 11 8 2 13 13 C 1.37607 * 120.25954 * 180.30241 * 12 11 8 14 14 C 1.40735 * 119.77406 * 359.71969 * 13 12 11 15 15 C 1.41398 * 120.23914 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99985 * 151.06371 * 15 14 13 17 17 C 1.39948 * 119.99708 * 331.05374 * 15 14 13 18 18 N 1.30831 * 119.99695 * 162.71174 * 17 15 14 19 19 Si 1.86799 * 120.00435 * 342.71973 * 17 15 14 20 20 H 1.48506 * 109.47315 * 95.25643 * 19 17 15 21 21 H 1.48497 * 109.47336 * 215.26300 * 19 17 15 22 22 H 1.48504 * 109.46722 * 335.26111 * 19 17 15 23 23 C 1.40681 * 119.52531 * 0.02562 * 14 13 12 24 24 C 1.37754 * 119.72822 * 359.97438 * 23 14 13 25 25 Cl 1.73602 * 119.88428 * 180.02562 * 24 23 14 26 26 H 1.09003 * 109.46488 * 269.99963 * 1 2 3 27 27 H 1.08996 * 109.46823 * 29.99610 * 1 2 3 28 28 H 1.08997 * 109.47305 * 150.00165 * 1 2 3 29 29 H 1.09004 * 109.46895 * 36.73017 * 3 2 1 30 30 H 1.09001 * 109.47329 * 156.72930 * 3 2 1 31 31 H 1.09004 * 109.47292 * 299.99789 * 4 3 2 32 32 H 1.09001 * 109.47094 * 59.99801 * 4 3 2 33 33 H 1.09003 * 109.47429 * 299.99813 * 5 4 3 34 34 H 1.09001 * 109.47227 * 59.99996 * 5 4 3 35 35 H 1.09004 * 109.47124 * 299.99996 * 6 5 4 36 36 H 1.09001 * 109.46941 * 59.99812 * 6 5 4 37 37 H 0.96695 * 113.99695 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.86773 * 0.02562 * 12 11 8 39 39 H 1.07998 * 120.11321 * 179.70765 * 13 12 11 40 40 H 0.96999 * 119.99309 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.13345 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3062 1.7948 -1.4326 5 6 3.0707 3.1201 -1.4325 6 6 3.1788 3.6467 -2.8649 7 8 3.8933 4.8842 -2.8650 8 16 2.2930 -1.4342 -0.0006 9 8 3.5170 -1.1905 -0.6802 10 8 1.3657 -2.4327 -0.4037 11 6 2.7153 -1.7933 1.6718 12 6 4.0428 -1.7551 2.0697 13 6 4.3849 -2.0398 3.3718 14 6 3.3810 -2.3651 4.3030 15 6 3.7214 -2.6589 5.6436 16 1 3.0179 -2.4533 6.4368 17 6 4.9698 -3.2163 5.9425 18 7 5.4264 -3.1787 7.1679 19 14 5.9843 -4.0136 4.5918 20 1 6.9555 -3.0271 4.0542 21 1 6.7183 -5.1792 5.1466 22 1 5.0855 -4.4684 3.5007 23 6 2.0364 -2.3960 3.8904 24 6 1.7166 -2.1075 2.5820 25 17 0.0586 -2.1437 2.0686 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6659 1.9951 0.6146 30 1 3.1968 1.1113 0.4060 31 1 2.8378 1.0684 -2.0472 32 1 1.3069 1.9522 -1.8386 33 1 2.5387 3.8465 -0.8181 34 1 4.0699 2.9632 -1.0264 35 1 3.7105 2.9205 -3.4798 36 1 2.1794 3.8037 -3.2707 37 1 3.9996 5.2769 -3.7422 38 1 4.8119 -1.5052 1.3539 39 1 5.4202 -2.0140 3.6781 40 1 6.2919 -3.5647 7.3750 41 1 1.2581 -2.6440 4.5969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451456448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = -144.708991 kcal Electronic energy + Delta-G solvation = -26435.582956 eV Core-core repulsion = 22466.822204 eV Total energy + Delta-G solvation = -3968.760751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.86403 -38.50504 -38.25040 -37.53977 -37.35441 -36.79435 -35.80950 -34.17301 -32.74632 -31.58471 -29.41127 -27.73399 -26.66365 -23.89687 -23.70335 -23.09011 -22.07139 -20.05184 -19.70730 -18.95970 -18.38130 -18.14407 -17.45805 -17.14486 -16.62887 -16.35783 -16.16593 -15.54726 -15.41070 -15.03705 -14.85661 -14.74654 -14.67672 -14.63538 -14.23431 -13.73542 -13.59688 -13.27761 -13.18739 -13.08095 -12.91836 -12.87798 -12.78657 -12.61436 -12.53004 -12.37354 -12.08169 -11.99138 -11.87018 -11.76670 -11.52264 -11.41379 -11.20423 -10.83251 -10.11399 -9.95674 -9.61012 -9.21486 -6.89682 -0.45150 0.08694 0.54835 1.06856 1.18566 1.32205 1.40120 1.95481 2.02802 2.28001 2.80369 3.12726 3.34358 3.48617 3.83505 4.00974 4.07075 4.13446 4.31531 4.37009 4.45618 4.52041 4.58563 4.60948 4.70940 4.73009 4.75553 4.83184 4.87992 5.00714 5.05191 5.10121 5.10376 5.20346 5.27602 5.37206 5.41005 5.59093 5.72448 5.80501 6.01790 6.34371 6.44905 6.93098 7.82483 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003592 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.033130 B = 7792.426171 C = 8954.512283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.994 5.994 3 C 0.120 3.880 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.074 3.926 7 O -0.598 6.598 8 S 2.709 3.291 9 O -0.990 6.990 10 O -0.982 6.982 11 C -0.802 4.802 12 C 0.017 3.983 13 C -0.265 4.265 14 C 0.110 3.890 15 C -0.434 4.434 16 H 0.081 0.919 17 C 0.056 3.944 18 N -0.801 5.801 19 Si 0.953 3.047 20 H -0.247 1.247 21 H -0.267 1.267 22 H -0.255 1.255 23 C -0.222 4.222 24 C 0.089 3.911 25 Cl -0.065 7.065 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.307 0.693 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 10.064 -14.257 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.833 5.833 3 C -0.005 4.005 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.004 4.004 7 O -0.406 6.406 8 S 2.803 3.197 9 O -0.980 6.980 10 O -0.972 6.972 11 C -0.893 4.893 12 C -0.003 4.003 13 C -0.285 4.285 14 C 0.106 3.894 15 C -0.460 4.460 16 H 0.099 0.901 17 C -0.166 4.166 18 N -0.423 5.423 19 Si 0.775 3.225 20 H -0.172 1.172 21 H -0.192 1.192 22 H -0.179 1.179 23 C -0.243 4.243 24 C 0.061 3.939 25 Cl -0.036 7.036 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.146 9.398 -14.109 17.716 hybrid contribution 0.393 -0.356 0.419 0.676 sum -4.753 9.041 -13.690 17.080 Atomic orbital electron populations 1.21882 0.77233 1.04695 1.02849 1.57231 1.15814 1.20582 1.89652 1.21440 0.96503 0.84690 0.97904 1.21887 1.01835 0.96324 0.96988 1.21420 1.01069 0.96304 0.96890 1.22224 0.95884 0.85168 0.97093 1.86426 1.78841 1.38715 1.36644 1.01020 0.72324 0.72866 0.73512 1.93467 1.46294 1.85642 1.72608 1.93507 1.63859 1.57851 1.81996 1.29825 0.99764 1.35029 1.24719 1.20518 0.93544 0.90729 0.95487 1.21269 0.98946 1.13337 0.94956 1.17905 0.91818 0.87045 0.92649 1.19833 1.00278 1.33237 0.92637 0.90094 1.26893 0.97394 0.93750 0.98538 1.69644 1.19402 1.31234 1.21981 0.85653 0.78998 0.78992 0.78830 1.17170 1.19235 1.17902 1.21090 0.96788 1.12193 0.94238 1.20142 0.83685 0.96350 0.93762 1.98332 1.18270 1.96504 1.90464 0.92450 0.87663 0.90883 0.87981 0.91083 0.92355 0.89364 0.90392 0.92234 0.93408 0.91940 0.75347 0.84227 0.86590 0.88144 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 9.05 127.77 1.16 2.87 16 2 N -0.99 -26.73 3.19 -539.13 -1.72 -28.44 16 3 C 0.12 2.68 5.34 86.38 0.46 3.14 16 4 C -0.13 -2.50 5.53 30.59 0.17 -2.33 16 5 C -0.12 -2.14 5.58 30.59 0.17 -1.96 16 6 C 0.07 1.15 7.05 71.98 0.51 1.66 16 7 O -0.60 -10.23 13.66 -148.98 -2.04 -12.26 16 8 S 2.71 97.01 5.06 -56.49 -0.29 96.72 16 9 O -0.99 -37.89 16.12 -128.00 -2.06 -39.95 16 10 O -0.98 -38.52 14.75 -128.00 -1.89 -40.41 16 11 C -0.80 -32.62 5.94 22.48 0.13 -32.48 16 12 C 0.02 0.71 9.52 22.22 0.21 0.92 16 13 C -0.27 -11.89 7.12 22.73 0.16 -11.73 16 14 C 0.11 5.22 5.14 -21.29 -0.11 5.11 16 15 C -0.43 -21.61 9.58 23.46 0.22 -21.38 16 16 H 0.08 4.23 8.06 -2.91 -0.02 4.21 16 17 C 0.06 2.67 5.42 85.26 0.46 3.13 16 18 N -0.80 -38.30 13.93 21.83 0.30 -38.00 16 19 Si 0.95 38.43 24.46 68.60 1.68 40.11 16 20 H -0.25 -9.30 6.70 99.48 0.67 -8.64 16 21 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.26 -10.96 6.78 99.48 0.67 -10.29 16 23 C -0.22 -9.86 9.57 22.75 0.22 -9.64 16 24 C 0.09 3.66 6.29 22.27 0.14 3.80 16 25 Cl -0.06 -2.24 23.15 -2.72 -0.06 -2.31 16 26 H 0.06 1.28 6.44 -2.39 -0.02 1.26 16 27 H 0.10 1.53 8.00 -2.39 -0.02 1.51 16 28 H 0.07 1.74 7.00 -2.39 -0.02 1.72 16 29 H 0.10 1.80 8.12 -2.39 -0.02 1.78 16 30 H 0.07 1.77 7.73 -2.39 -0.02 1.75 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.31 8.07 -2.39 -0.02 1.29 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.40 2.96 9.12 -74.06 -0.68 2.29 16 38 H 0.14 5.22 7.31 -2.91 -0.02 5.20 16 39 H 0.12 4.99 4.54 -2.91 -0.01 4.97 16 40 H 0.31 12.97 8.30 -92.71 -0.77 12.20 16 41 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -61.18 357.49 -1.85 -63.03 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.32 Total: 20.42 kcal Atomic # 6 Polarization: -62.81 SS G_CDS: 3.91 Total: -58.90 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -1.41 Total: -66.44 kcal Atomic # 8 Polarization: -86.64 SS G_CDS: -5.99 Total: -92.63 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.68 Total: 40.11 kcal Atomic # 16 Polarization: 97.01 SS G_CDS: -0.29 Total: 96.72 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.06 Total: -2.31 kcal Total: -61.18 -1.85 -63.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.683 kcal (2) G-P(sol) polarization free energy of solvation -61.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds