Wall clock time and date at job start Wed Apr 1 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47133 * 65.18955 * 3 2 1 5 5 C 1.36937 * 120.00261 * 273.28912 * 4 3 2 6 6 H 1.08000 * 120.00130 * 184.96702 * 5 4 3 7 7 C 1.38817 * 119.99738 * 4.97536 * 5 4 3 8 8 N 1.31619 * 120.00072 * 26.84303 * 7 5 4 9 9 Si 1.86796 * 119.99556 * 206.85129 * 7 5 4 10 10 H 1.48500 * 109.47402 * 94.99163 * 9 7 5 11 11 H 1.48498 * 109.46795 * 214.98825 * 9 7 5 12 12 H 1.48497 * 109.47422 * 334.98771 * 9 7 5 13 13 S 1.65603 * 120.00015 * 93.28867 * 4 3 2 14 14 O 1.42098 * 106.40387 * 156.45913 * 13 4 3 15 15 O 1.42105 * 106.40195 * 23.53983 * 13 4 3 16 16 C 1.76203 * 107.21802 * 270.00204 * 13 4 3 17 17 C 1.38358 * 119.93087 * 90.00102 * 16 13 4 18 18 C 1.38320 * 120.27350 * 180.02562 * 17 16 13 19 19 C 1.38003 * 120.13478 * 359.97438 * 18 17 16 20 20 C 1.39463 * 119.86182 * 0.02562 * 19 18 17 21 21 C 1.48021 * 120.13526 * 179.97438 * 20 19 18 22 22 N 1.31621 * 126.48033 * 199.01057 * 21 20 19 23 23 N 1.28411 * 110.49884 * 179.97438 * 22 21 20 24 24 N 1.28893 * 110.39362 * 359.97438 * 23 22 21 25 25 N 1.35606 * 126.47664 * 18.99245 * 21 20 19 26 26 C 1.46502 * 127.39867 * 359.97438 * 25 21 20 27 27 C 1.37963 * 119.92946 * 270.27819 * 16 13 4 28 28 H 4.40642 * 5.51424 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.47633 * 305.19138 * 3 2 1 30 30 H 1.08997 * 109.47101 * 185.18861 * 3 2 1 31 31 H 0.96994 * 119.99900 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.86614 * 359.97438 * 17 16 13 33 33 H 1.08004 * 119.93431 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.07181 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.46818 * 276.58532 * 26 25 21 36 36 H 1.09005 * 109.47194 * 36.58085 * 26 25 21 37 37 H 1.08997 * 109.47025 * 156.58526 * 26 25 21 38 38 H 1.07994 * 120.07245 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5787 -1.2538 5 6 3.2993 -1.9337 -1.3635 6 1 3.7346 -2.3541 -2.2581 7 6 2.9066 -2.7670 -0.3251 8 7 1.9445 -2.3925 0.4913 9 14 3.7437 -4.4197 -0.0863 10 1 4.8367 -4.2818 0.9096 11 1 2.7517 -5.4111 0.4017 12 1 4.3083 -4.8802 -1.3802 13 16 3.4878 0.4050 -2.5383 14 8 4.4132 -0.3080 -3.3473 15 8 3.7583 1.6906 -1.9966 16 6 2.0148 0.5668 -3.4917 17 6 1.1237 1.5890 -3.2174 18 6 -0.0350 1.7223 -3.9610 19 6 -0.3086 0.8355 -4.9824 20 6 0.5858 -0.1969 -5.2638 21 6 0.2982 -1.1518 -6.3576 22 7 0.8347 -2.3430 -6.5179 23 7 0.3644 -2.9103 -7.5695 24 7 -0.4918 -2.1412 -8.1499 25 7 -0.5683 -0.9649 -7.3839 26 6 -1.4057 0.2099 -7.6386 27 6 1.7498 -0.3295 -4.5065 28 1 -1.0499 -0.0002 -0.0001 29 1 3.0097 -0.5914 0.8398 30 1 3.0089 1.0242 0.0929 31 1 1.6704 -2.9745 1.2172 32 1 1.3331 2.2852 -2.4188 33 1 -0.7270 2.5220 -3.7419 34 1 -1.2133 0.9408 -5.5627 35 1 -2.3192 0.1398 -7.0480 36 1 -0.8610 1.1118 -7.3596 37 1 -1.6601 0.2519 -8.6977 38 1 2.4438 -1.1299 -4.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490841919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:38 Heat of formation + Delta-G solvation = 156.637280 kcal Electronic energy + Delta-G solvation = -28187.127270 eV Core-core repulsion = 24162.619130 eV Total energy + Delta-G solvation = -4024.508139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.93699 -38.95947 -36.45803 -35.94419 -35.38538 -34.50552 -33.01481 -32.18972 -31.25982 -30.98092 -30.18531 -28.45939 -26.72554 -23.98275 -23.96944 -23.49318 -22.36124 -21.29435 -18.69801 -18.26178 -17.70050 -17.02759 -16.80648 -16.72492 -16.51172 -15.84889 -15.29305 -14.95344 -14.71769 -14.32832 -14.01312 -13.93432 -13.72290 -13.44772 -13.36566 -12.92295 -12.86251 -12.47453 -12.29485 -11.96853 -11.70025 -11.45741 -11.32846 -11.06509 -10.86710 -10.84232 -10.81365 -10.73274 -10.52437 -10.49565 -10.36717 -10.04100 -9.71357 -9.38527 -9.12457 -8.90931 -8.64386 -8.43803 -6.76651 -4.05275 0.45935 1.15882 1.54102 1.59475 1.74500 2.47184 3.05750 3.12629 3.19038 3.57113 3.74001 3.83711 3.92410 4.03762 4.05524 4.45210 4.55934 4.61070 4.66617 4.73590 4.94640 4.98613 5.04853 5.26864 5.31634 5.34169 5.45580 5.54780 5.71390 5.82623 6.05167 6.06776 6.19382 6.29420 6.33456 6.54821 6.62918 6.87133 6.95731 7.03023 7.13340 8.03359 8.40981 8.49068 8.77156 8.84446 10.14743 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.004484 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.458038 B = 6242.556416 C = 7215.500797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.115 4.115 3 C 0.228 3.772 4 N -0.784 5.784 5 C -0.228 4.228 6 H 0.129 0.871 7 C 0.029 3.971 8 N -0.807 5.807 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.259 1.259 13 S 2.503 3.497 14 O -0.978 6.978 15 O -0.996 6.996 16 C -0.653 4.653 17 C 0.000 4.000 18 C -0.143 4.143 19 C -0.076 4.076 20 C -0.075 4.075 21 C 0.306 3.694 22 N -0.319 5.319 23 N -0.037 5.037 24 N -0.095 5.095 25 N -0.384 5.384 26 C 0.083 3.917 27 C 0.033 3.967 28 H 0.196 0.804 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.279 0.721 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 6.876 -5.014 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.117 4.117 3 C 0.103 3.897 4 N -0.604 5.604 5 C -0.378 4.378 6 H 0.147 0.853 7 C -0.186 4.186 8 N -0.445 5.445 9 Si 0.757 3.243 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.182 1.182 13 S 2.601 3.399 14 O -0.968 6.968 15 O -0.986 6.986 16 C -0.728 4.728 17 C -0.020 4.020 18 C -0.162 4.162 19 C -0.097 4.097 20 C -0.079 4.079 21 C 0.031 3.969 22 N -0.171 5.171 23 N -0.032 5.032 24 N -0.080 5.080 25 N -0.181 5.181 26 C -0.059 4.059 27 C 0.012 3.988 28 H 0.213 0.787 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.063 6.259 -6.028 11.198 hybrid contribution -1.614 -0.034 0.065 1.616 sum -8.677 6.225 -5.963 12.231 Atomic orbital electron populations 1.24201 0.95281 1.06599 1.02152 1.23410 0.94553 0.95157 0.98623 1.18634 0.83887 0.98059 0.89097 1.55971 1.70189 1.16586 1.17684 1.20419 1.30403 0.81709 1.05309 0.85350 1.25701 0.95236 1.00392 0.97248 1.70251 1.21029 1.37513 1.15732 0.85760 0.79091 0.79461 0.79939 1.19540 1.20569 1.18231 1.13437 0.79058 0.74246 0.73165 1.93365 1.62171 1.72280 1.68977 1.93333 1.85796 1.41600 1.77874 1.32868 1.27606 1.01265 1.11094 1.21111 0.91234 0.93979 0.95646 1.21105 0.98288 1.00076 0.96729 1.21362 0.97555 0.93401 0.97359 1.17565 0.98766 0.95622 0.95971 1.23658 0.89012 0.93990 0.90219 1.74877 1.24384 1.04747 1.13075 1.77969 1.03451 1.20642 1.01138 1.82449 1.18846 0.90297 1.16426 1.51627 1.31866 1.15897 1.18704 1.22390 0.94460 0.83844 1.05218 1.20968 0.93260 0.95285 0.89284 0.78707 0.86413 0.89781 0.90982 0.84535 0.85081 0.85612 0.88956 0.87956 0.87741 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.02 19.25 29.55 0.57 -4.45 16 2 C -0.11 -2.37 11.35 -37.12 -0.42 -2.79 16 3 C 0.23 4.73 5.45 -6.83 -0.04 4.69 16 4 N -0.78 -17.45 2.88 -62.77 -0.18 -17.63 16 5 C -0.23 -5.27 9.46 -15.06 -0.14 -5.41 16 6 H 0.13 2.99 7.25 -52.49 -0.38 2.61 16 7 C 0.03 0.63 4.90 -17.43 -0.09 0.55 16 8 N -0.81 -18.07 9.05 55.49 0.50 -17.57 16 9 Si 0.93 17.79 29.63 -169.99 -5.04 12.75 16 10 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 11 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 13 S 2.50 55.21 5.65 -107.50 -0.61 54.61 16 14 O -0.98 -23.94 16.07 -57.17 -0.92 -24.85 16 15 O -1.00 -22.74 15.84 -57.17 -0.91 -23.65 16 16 C -0.65 -12.71 5.97 -39.64 -0.24 -12.94 16 17 C 0.00 0.00 9.52 -39.51 -0.38 -0.37 16 18 C -0.14 -1.89 10.03 -39.64 -0.40 -2.29 16 19 C -0.08 -0.97 8.72 -39.21 -0.34 -1.32 16 20 C -0.07 -1.21 5.87 -104.96 -0.62 -1.83 16 21 C 0.31 5.01 7.77 -155.22 -1.21 3.81 16 22 N -0.32 -6.09 11.99 32.32 0.39 -5.70 16 23 N -0.04 -0.67 13.37 60.35 0.81 0.13 16 24 N -0.09 -1.51 13.93 60.35 0.84 -0.67 16 25 N -0.38 -5.15 4.10 -65.55 -0.27 -5.42 16 26 C 0.08 0.60 9.73 59.85 0.58 1.18 16 27 C 0.03 0.64 9.17 -39.21 -0.36 0.28 16 28 H 0.20 3.06 7.80 -54.10 -0.42 2.64 16 29 H 0.12 2.46 6.35 -51.93 -0.33 2.13 16 30 H 0.08 1.61 6.95 -51.93 -0.36 1.25 16 31 H 0.28 5.91 8.31 -40.82 -0.34 5.57 16 32 H 0.14 2.18 7.61 -52.49 -0.40 1.78 16 33 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.13 1.08 4.97 -52.49 -0.26 0.82 16 35 H 0.09 0.48 7.72 -51.93 -0.40 0.08 16 36 H 0.10 0.59 6.60 -51.93 -0.34 0.25 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.15 3.00 7.54 -52.49 -0.40 2.60 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -30.70 348.30 -6.47 -37.18 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.27 Total: 6.47 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -3.07 Total: -20.90 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 2.09 Total: -46.85 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -1.82 Total: -48.50 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.04 Total: 12.75 kcal Atomic # 16 Polarization: 55.21 SS G_CDS: -0.61 Total: 54.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.70 -6.47 -37.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490841919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.813 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds