Wall clock time and date at job start Wed Apr 1 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47133 * 65.18955 * 3 2 1 5 5 C 1.36937 * 120.00261 * 273.28912 * 4 3 2 6 6 H 1.08000 * 120.00130 * 184.96702 * 5 4 3 7 7 C 1.38817 * 119.99738 * 4.97536 * 5 4 3 8 8 N 1.31619 * 120.00072 * 26.84303 * 7 5 4 9 9 Si 1.86796 * 119.99556 * 206.85129 * 7 5 4 10 10 H 1.48500 * 109.47402 * 94.99163 * 9 7 5 11 11 H 1.48498 * 109.46795 * 214.98825 * 9 7 5 12 12 H 1.48497 * 109.47422 * 334.98771 * 9 7 5 13 13 S 1.65603 * 120.00015 * 93.28867 * 4 3 2 14 14 O 1.42098 * 106.40387 * 156.45913 * 13 4 3 15 15 O 1.42105 * 106.40195 * 23.53983 * 13 4 3 16 16 C 1.76203 * 107.21802 * 270.00204 * 13 4 3 17 17 C 1.38358 * 119.93087 * 90.00102 * 16 13 4 18 18 C 1.38320 * 120.27350 * 180.02562 * 17 16 13 19 19 C 1.38003 * 120.13478 * 359.97438 * 18 17 16 20 20 C 1.39463 * 119.86182 * 0.02562 * 19 18 17 21 21 C 1.48021 * 120.13526 * 179.97438 * 20 19 18 22 22 N 1.31621 * 126.48033 * 199.01057 * 21 20 19 23 23 N 1.28411 * 110.49884 * 179.97438 * 22 21 20 24 24 N 1.28893 * 110.39362 * 359.97438 * 23 22 21 25 25 N 1.35606 * 126.47664 * 18.99245 * 21 20 19 26 26 C 1.46502 * 127.39867 * 359.97438 * 25 21 20 27 27 C 1.37963 * 119.92946 * 270.27819 * 16 13 4 28 28 H 4.40642 * 5.51424 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.47633 * 305.19138 * 3 2 1 30 30 H 1.08997 * 109.47101 * 185.18861 * 3 2 1 31 31 H 0.96994 * 119.99900 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.86614 * 359.97438 * 17 16 13 33 33 H 1.08004 * 119.93431 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.07181 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.46818 * 276.58532 * 26 25 21 36 36 H 1.09005 * 109.47194 * 36.58085 * 26 25 21 37 37 H 1.08997 * 109.47025 * 156.58526 * 26 25 21 38 38 H 1.07994 * 120.07245 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5787 -1.2538 5 6 3.2993 -1.9337 -1.3635 6 1 3.7346 -2.3541 -2.2581 7 6 2.9066 -2.7670 -0.3251 8 7 1.9445 -2.3925 0.4913 9 14 3.7437 -4.4197 -0.0863 10 1 4.8367 -4.2818 0.9096 11 1 2.7517 -5.4111 0.4017 12 1 4.3083 -4.8802 -1.3802 13 16 3.4878 0.4050 -2.5383 14 8 4.4132 -0.3080 -3.3473 15 8 3.7583 1.6906 -1.9966 16 6 2.0148 0.5668 -3.4917 17 6 1.1237 1.5890 -3.2174 18 6 -0.0350 1.7223 -3.9610 19 6 -0.3086 0.8355 -4.9824 20 6 0.5858 -0.1969 -5.2638 21 6 0.2982 -1.1518 -6.3576 22 7 0.8347 -2.3430 -6.5179 23 7 0.3644 -2.9103 -7.5695 24 7 -0.4918 -2.1412 -8.1499 25 7 -0.5683 -0.9649 -7.3839 26 6 -1.4057 0.2099 -7.6386 27 6 1.7498 -0.3295 -4.5065 28 1 -1.0499 -0.0002 -0.0001 29 1 3.0097 -0.5914 0.8398 30 1 3.0089 1.0242 0.0929 31 1 1.6704 -2.9745 1.2172 32 1 1.3331 2.2852 -2.4188 33 1 -0.7270 2.5220 -3.7419 34 1 -1.2133 0.9408 -5.5627 35 1 -2.3192 0.1398 -7.0480 36 1 -0.8610 1.1118 -7.3596 37 1 -1.6601 0.2519 -8.6977 38 1 2.4438 -1.1299 -4.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490841919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:36 Heat of formation + Delta-G solvation = 135.553216 kcal Electronic energy + Delta-G solvation = -28188.041543 eV Core-core repulsion = 24162.619130 eV Total energy + Delta-G solvation = -4025.422413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -44.16478 -40.22338 -38.09366 -37.84360 -36.47443 -36.41538 -34.25985 -33.77793 -32.85615 -32.26725 -31.44140 -29.32181 -28.33410 -25.65534 -25.21499 -24.69420 -23.64142 -22.52763 -20.37488 -19.79696 -19.16859 -18.48348 -18.13973 -18.10235 -17.86774 -17.11013 -16.79789 -16.40407 -16.28972 -15.86844 -15.18146 -15.05610 -14.85423 -14.83559 -14.74237 -14.31058 -14.04691 -13.90323 -13.58266 -13.54009 -13.12264 -12.88330 -12.77086 -12.67549 -12.62162 -12.55948 -12.28060 -12.10541 -12.05128 -11.94698 -11.65111 -11.56711 -11.29831 -10.92692 -10.57587 -10.31256 -10.07206 -9.91408 -8.38071 -5.79927 -0.74278 -0.27927 -0.00306 0.28805 0.74517 1.18802 1.49718 1.54235 1.64057 2.03770 2.36288 2.42738 2.49625 2.65114 2.79893 2.91380 3.07023 3.23594 3.56856 3.76100 3.82339 3.88162 3.99422 4.03748 4.18360 4.22104 4.39779 4.41790 4.51930 4.56086 4.59197 4.78507 4.96619 4.99595 5.08398 5.15971 5.19873 5.28052 5.45425 5.56085 5.72240 6.35424 6.75214 7.17488 7.24121 7.26910 8.54566 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.004484 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.458038 B = 6242.556416 C = 7215.500797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.150 4.150 3 C 0.231 3.769 4 N -0.804 5.804 5 C -0.277 4.277 6 H 0.109 0.891 7 C 0.007 3.993 8 N -0.831 5.831 9 Si 0.979 3.021 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.270 1.270 13 S 2.548 3.452 14 O -1.010 7.010 15 O -1.005 7.005 16 C -0.678 4.678 17 C -0.011 4.011 18 C -0.124 4.124 19 C -0.049 4.049 20 C -0.077 4.077 21 C 0.295 3.705 22 N -0.361 5.361 23 N -0.066 5.066 24 N -0.092 5.092 25 N -0.362 5.362 26 C 0.058 3.942 27 C 0.008 3.992 28 H 0.229 0.771 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.279 0.721 32 H 0.142 0.858 33 H 0.186 0.814 34 H 0.182 0.818 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 9.643 -6.237 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.153 4.153 3 C 0.106 3.894 4 N -0.627 5.627 5 C -0.423 4.423 6 H 0.126 0.874 7 C -0.204 4.204 8 N -0.469 5.469 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.194 1.194 13 S 2.648 3.352 14 O -1.000 7.000 15 O -0.995 6.995 16 C -0.759 4.759 17 C -0.031 4.031 18 C -0.142 4.142 19 C -0.068 4.068 20 C -0.081 4.081 21 C 0.020 3.980 22 N -0.214 5.214 23 N -0.061 5.061 24 N -0.078 5.078 25 N -0.159 5.159 26 C -0.080 4.080 27 C -0.014 4.014 28 H 0.246 0.754 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.203 0.797 34 H 0.199 0.801 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.825 8.976 -7.182 15.791 hybrid contribution -0.616 -0.549 0.129 0.835 sum -11.441 8.428 -7.054 15.865 Atomic orbital electron populations 1.24965 0.96082 1.04985 1.00441 1.23530 0.94953 0.96638 1.00162 1.18525 0.84748 0.97948 0.88140 1.55192 1.72786 1.16135 1.18576 1.20116 1.34247 0.82123 1.05770 0.87373 1.26089 0.95332 1.02190 0.96754 1.70298 1.21791 1.38349 1.16470 0.85106 0.78458 0.76994 0.79195 1.18873 1.20274 1.19404 1.10310 0.78512 0.73336 0.72997 1.93345 1.63560 1.73262 1.69797 1.93331 1.86194 1.41482 1.78465 1.32062 1.27080 1.04142 1.12625 1.21369 0.92173 0.93029 0.96496 1.21659 0.97078 1.00661 0.94835 1.21983 0.97776 0.90576 0.96488 1.17623 0.98375 0.96629 0.95487 1.23546 0.89873 0.93458 0.91149 1.74772 1.25913 1.06672 1.14025 1.77956 1.04765 1.21770 1.01632 1.82313 1.17997 0.91042 1.16440 1.51954 1.30919 1.16256 1.16771 1.23137 0.95042 0.82031 1.07826 1.20775 0.94803 0.95043 0.90739 0.75431 0.87347 0.88966 0.91025 0.83978 0.79716 0.80141 0.85578 0.85656 0.85392 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.92 19.25 74.32 1.43 -7.49 16 2 C -0.15 -6.17 11.35 31.12 0.35 -5.82 16 3 C 0.23 9.90 5.45 84.57 0.46 10.36 16 4 N -0.80 -37.58 2.88 -352.52 -1.02 -38.60 16 5 C -0.28 -13.72 9.46 84.03 0.80 -12.92 16 6 H 0.11 5.58 7.25 -2.91 -0.02 5.56 16 7 C 0.01 0.35 4.90 84.86 0.42 0.76 16 8 N -0.83 -38.60 9.05 21.65 0.20 -38.41 16 9 Si 0.98 38.42 29.63 68.60 2.03 40.45 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 11 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 13 S 2.55 116.30 5.65 -56.49 -0.32 115.98 16 14 O -1.01 -52.32 16.07 -128.00 -2.06 -54.37 16 15 O -1.00 -46.27 15.84 -128.00 -2.03 -48.30 16 16 C -0.68 -26.23 5.97 22.23 0.13 -26.10 16 17 C -0.01 -0.33 9.52 22.32 0.21 -0.11 16 18 C -0.12 -2.53 10.03 22.23 0.22 -2.30 16 19 C -0.05 -0.96 8.72 22.51 0.20 -0.76 16 20 C -0.08 -2.30 5.87 -20.08 -0.12 -2.42 16 21 C 0.29 9.20 7.77 136.80 1.06 10.26 16 22 N -0.36 -14.03 11.99 -51.65 -0.62 -14.65 16 23 N -0.07 -2.44 13.37 37.02 0.50 -1.95 16 24 N -0.09 -2.77 13.93 37.02 0.52 -2.25 16 25 N -0.36 -8.49 4.10 -361.31 -1.48 -9.97 16 26 C 0.06 0.49 9.73 127.77 1.24 1.73 16 27 C 0.01 0.31 9.17 22.51 0.21 0.52 16 28 H 0.23 6.33 7.80 -4.42 -0.03 6.29 16 29 H 0.11 4.78 6.35 -2.39 -0.02 4.77 16 30 H 0.09 3.63 6.95 -2.39 -0.02 3.61 16 31 H 0.28 12.22 8.31 -92.71 -0.77 11.45 16 32 H 0.14 4.13 7.61 -2.91 -0.02 4.11 16 33 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.18 1.57 4.97 -2.91 -0.01 1.56 16 35 H 0.13 0.35 7.72 -2.38 -0.02 0.33 16 36 H 0.13 0.55 6.60 -2.38 -0.02 0.54 16 37 H 0.13 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.12 5.18 7.54 -2.91 -0.02 5.16 16 Total: -1.00 -73.28 348.30 3.46 -69.82 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.13 Total: 16.53 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 6.62 Total: -34.29 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -1.91 Total: -105.82 kcal Atomic # 8 Polarization: -98.59 SS G_CDS: -4.08 Total: -102.67 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 116.30 SS G_CDS: -0.32 Total: 115.98 kcal Total: -73.28 3.46 -69.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490841919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.371 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds