Wall clock time and date at job start Wed Apr 1 2020 04:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00120 * 2 1 4 4 O 1.20819 * 119.99951 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99759 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.46879 * 179.97438 * 5 3 2 7 7 C 1.36900 * 119.99995 * 264.48117 * 6 5 3 8 8 H 1.08004 * 119.99829 * 130.67661 * 7 6 5 9 9 C 1.39014 * 120.00184 * 310.66759 * 7 6 5 10 10 N 1.31381 * 120.00197 * 351.12330 * 9 7 6 11 11 Si 1.86799 * 120.00277 * 171.11831 * 9 7 6 12 12 H 1.48499 * 109.47187 * 89.99930 * 11 9 7 13 13 H 1.48505 * 109.47574 * 210.00599 * 11 9 7 14 14 H 1.48505 * 109.46755 * 330.00348 * 11 9 7 15 15 C 1.34781 * 119.99667 * 84.48300 * 6 5 3 16 16 O 1.21630 * 119.99852 * 2.79691 * 15 6 5 17 17 C 1.47428 * 119.99966 * 182.80552 * 15 6 5 18 18 C 1.39766 * 120.19333 * 308.24186 * 17 15 6 19 19 C 1.37772 * 119.90161 * 180.23106 * 18 17 15 20 20 C 1.38562 * 120.30303 * 359.49875 * 19 18 17 21 21 C 1.38075 * 120.40233 * 0.23110 * 20 19 18 22 22 C 1.50698 * 119.95328 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47142 * 0.02562 * 22 21 20 24 24 F 1.39911 * 109.46751 * 119.99901 * 22 21 20 25 25 F 1.39893 * 109.47110 * 239.99550 * 22 21 20 26 26 C 1.38681 * 120.08748 * 0.02562 * 21 20 19 27 27 O 1.35665 * 120.14751 * 179.97438 * 26 21 20 28 28 H 1.08993 * 109.47258 * 299.99760 * 1 2 3 29 29 H 1.09002 * 109.46884 * 60.00314 * 1 2 3 30 30 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47233 * 60.00742 * 5 3 2 32 32 H 1.08998 * 109.47701 * 300.00117 * 5 3 2 33 33 H 0.97003 * 120.00115 * 179.97438 * 10 9 7 34 34 H 1.07999 * 120.05115 * 0.02562 * 18 17 15 35 35 H 1.07998 * 119.84762 * 179.77201 * 19 18 17 36 36 H 1.08002 * 119.79636 * 180.25106 * 20 19 18 37 37 H 0.96702 * 113.99998 * 90.00477 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2857 3.3030 -1.1805 8 1 3.8500 4.2639 -1.4116 9 6 5.1553 2.6993 -2.0816 10 7 5.8198 1.6214 -1.7316 11 14 5.3789 3.4207 -3.7901 12 1 6.4850 4.4114 -3.7682 13 1 5.7067 2.3338 -4.7475 14 1 4.1228 4.0906 -4.2128 15 6 4.0647 3.3585 1.1613 16 8 3.8441 2.7911 2.2143 17 6 4.4226 4.7886 1.1554 18 6 5.5630 5.2250 0.4753 19 6 5.8945 6.5622 0.4776 20 6 5.0966 7.4791 1.1428 21 6 3.9641 7.0626 1.8140 22 6 3.1039 8.0685 2.5346 23 9 3.6521 9.3463 2.3806 24 9 1.8124 8.0476 1.9971 25 9 3.0482 7.7452 3.8946 26 6 3.6179 5.7198 1.8268 27 8 2.5058 5.3091 2.4864 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9558 0.7808 0.8908 33 1 6.4263 1.1999 -2.3605 34 1 6.1853 4.5145 -0.0486 35 1 6.7779 6.8979 -0.0451 36 1 5.3619 8.5260 1.1360 37 1 1.7053 5.3063 1.9438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566444825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:04 Heat of formation + Delta-G solvation = -273.118329 kcal Electronic energy + Delta-G solvation = -31729.792946 eV Core-core repulsion = 26637.454091 eV Total energy + Delta-G solvation = -5092.338855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.98083 -47.53982 -47.39467 -40.15500 -39.62114 -37.99836 -36.46792 -35.81505 -34.84866 -31.92108 -31.74871 -30.00351 -28.59729 -26.54572 -25.69865 -25.09321 -23.09919 -21.87421 -20.76913 -19.66108 -18.68580 -18.34899 -18.28128 -17.67539 -17.10862 -17.03136 -16.26994 -15.80199 -15.57378 -15.44990 -15.29140 -14.65842 -14.49470 -14.41241 -14.23844 -14.04813 -13.87815 -13.60380 -13.59552 -13.49052 -13.18943 -12.91010 -12.61920 -12.49686 -12.15550 -11.96378 -11.76017 -11.55678 -11.49815 -11.38481 -11.16262 -10.92196 -10.54205 -10.40708 -10.31583 -9.83483 -9.40320 -8.96820 -8.78329 -8.45789 -7.74669 -6.64501 -4.48580 1.15337 1.29182 2.81810 2.95816 2.97385 3.07547 3.10270 3.13468 3.47287 3.86368 3.89769 4.00275 4.19101 4.35806 4.50733 4.62177 4.74605 5.11589 5.34129 5.39427 5.46003 5.54149 5.56337 5.62349 5.84293 5.87624 5.98346 6.17671 6.33174 6.54436 6.60477 6.66233 6.92853 6.93403 7.20813 7.60475 7.83437 8.08821 8.46735 8.78704 9.11215 9.58113 10.39887 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004727 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.242610 B = 5921.453211 C = 7606.006854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.446 3.554 4 O -0.507 6.507 5 C 0.132 3.868 6 N -0.420 5.420 7 C -0.341 4.341 8 H 0.088 0.912 9 C 0.049 3.951 10 N -0.863 5.863 11 Si 0.916 3.084 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.267 1.267 15 C 0.537 3.463 16 O -0.570 6.570 17 C -0.111 4.111 18 C -0.009 4.009 19 C -0.148 4.148 20 C -0.055 4.055 21 C -0.233 4.233 22 C 0.519 3.481 23 F -0.182 7.182 24 F -0.181 7.181 25 F -0.172 7.172 26 C 0.192 3.808 27 O -0.479 6.479 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.276 0.724 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 5.976 0.428 6.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.288 3.712 4 O -0.393 6.393 5 C 0.006 3.994 6 N -0.140 5.140 7 C -0.469 4.469 8 H 0.105 0.895 9 C -0.158 4.158 10 N -0.498 5.498 11 Si 0.741 3.259 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.191 1.191 15 C 0.325 3.675 16 O -0.453 6.453 17 C -0.114 4.114 18 C -0.028 4.028 19 C -0.166 4.166 20 C -0.073 4.073 21 C -0.235 4.235 22 C 0.464 3.536 23 F -0.164 7.164 24 F -0.162 7.162 25 F -0.153 7.153 26 C 0.145 3.855 27 O -0.289 6.289 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.975 5.777 1.356 6.254 hybrid contribution -0.680 0.533 -1.326 1.583 sum -2.655 6.310 0.030 6.846 Atomic orbital electron populations 1.23100 0.77982 1.02698 1.02005 1.86549 1.22306 1.34760 1.84849 1.25331 0.93612 0.80882 0.71393 1.90554 1.67092 1.36474 1.45231 1.20949 0.83973 0.87777 1.06677 1.42789 1.57267 1.08427 1.05476 1.19369 1.26284 1.05870 0.95369 0.89481 1.25595 0.93842 0.96161 1.00213 1.69800 1.24391 1.19457 1.36128 0.86087 0.79272 0.79008 0.81504 1.19653 1.20451 1.19137 1.18062 0.79489 0.85938 0.83982 1.90705 1.53526 1.69634 1.31436 1.20255 0.97573 0.94779 0.98803 1.21700 0.94048 0.95884 0.91137 1.21090 1.00848 0.92956 1.01714 1.20908 0.92001 1.00536 0.93858 1.20146 1.01522 0.92702 1.09129 1.18069 0.78387 0.79614 0.77487 1.93127 1.85569 1.42158 1.95531 1.93184 1.40530 1.96488 1.86004 1.93225 1.96338 1.92473 1.33311 1.17994 0.88875 0.88569 0.90078 1.84771 1.17185 1.88336 1.38645 0.92456 0.92473 0.88865 0.84507 0.88080 0.91373 0.82912 0.84617 0.84565 0.74623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.83 10.56 -39.26 -0.41 -7.24 16 3 C 0.45 9.67 7.99 36.01 0.29 9.96 16 4 O -0.51 -12.00 16.05 -18.74 -0.30 -12.30 16 5 C 0.13 2.95 5.45 -5.19 -0.03 2.92 16 6 N -0.42 -9.94 1.98 -117.31 -0.23 -10.17 16 7 C -0.34 -7.89 6.57 -15.00 -0.10 -7.99 16 8 H 0.09 2.03 7.51 -52.48 -0.39 1.64 16 9 C 0.05 1.10 5.11 -17.46 -0.09 1.02 16 10 N -0.86 -20.07 11.69 55.50 0.65 -19.42 16 11 Si 0.92 17.67 29.56 -169.99 -5.03 12.64 16 12 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 13 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 15 C 0.54 12.86 6.66 -12.52 -0.08 12.77 16 16 O -0.57 -15.10 16.32 -0.57 -0.01 -15.10 16 17 C -0.11 -2.29 5.03 -104.85 -0.53 -2.82 16 18 C -0.01 -0.16 8.30 -39.18 -0.33 -0.49 16 19 C -0.15 -2.12 10.02 -39.63 -0.40 -2.52 16 20 C -0.05 -0.77 9.42 -39.52 -0.37 -1.14 16 21 C -0.23 -3.80 5.38 -104.52 -0.56 -4.36 16 22 C 0.52 7.93 2.99 36.00 0.11 8.04 16 23 F -0.18 -2.51 15.96 2.25 0.04 -2.47 16 24 F -0.18 -2.75 16.95 2.25 0.04 -2.72 16 25 F -0.17 -2.84 16.95 2.25 0.04 -2.80 16 26 C 0.19 3.66 6.58 -38.68 -0.25 3.41 16 27 O -0.48 -9.25 11.55 -24.52 -0.28 -9.53 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.14 3.09 6.09 -51.93 -0.32 2.77 16 32 H 0.10 2.25 7.56 -51.93 -0.39 1.86 16 33 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 34 H 0.15 2.86 7.23 -52.49 -0.38 2.48 16 35 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.14 1.52 7.13 -52.49 -0.37 1.15 16 37 H 0.40 6.41 9.06 45.56 0.41 6.82 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -29.38 344.32 -3.86 -33.24 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -2.27 Total: 10.32 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: -1.28 Total: 20.37 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.42 Total: -29.59 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.01 Total: -44.18 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.11 Total: -7.98 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.38 -3.86 -33.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566444825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.877 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds