Wall clock time and date at job start Wed Apr 1 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00120 * 2 1 4 4 O 1.20819 * 119.99951 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99759 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.46879 * 179.97438 * 5 3 2 7 7 C 1.36900 * 119.99995 * 264.48117 * 6 5 3 8 8 H 1.08004 * 119.99829 * 130.67661 * 7 6 5 9 9 C 1.39014 * 120.00184 * 310.66759 * 7 6 5 10 10 N 1.31381 * 120.00197 * 351.12330 * 9 7 6 11 11 Si 1.86799 * 120.00277 * 171.11831 * 9 7 6 12 12 H 1.48499 * 109.47187 * 89.99930 * 11 9 7 13 13 H 1.48505 * 109.47574 * 210.00599 * 11 9 7 14 14 H 1.48505 * 109.46755 * 330.00348 * 11 9 7 15 15 C 1.34781 * 119.99667 * 84.48300 * 6 5 3 16 16 O 1.21630 * 119.99852 * 2.79691 * 15 6 5 17 17 C 1.47428 * 119.99966 * 182.80552 * 15 6 5 18 18 C 1.39766 * 120.19333 * 308.24186 * 17 15 6 19 19 C 1.37772 * 119.90161 * 180.23106 * 18 17 15 20 20 C 1.38562 * 120.30303 * 359.49875 * 19 18 17 21 21 C 1.38075 * 120.40233 * 0.23110 * 20 19 18 22 22 C 1.50698 * 119.95328 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47142 * 0.02562 * 22 21 20 24 24 F 1.39911 * 109.46751 * 119.99901 * 22 21 20 25 25 F 1.39893 * 109.47110 * 239.99550 * 22 21 20 26 26 C 1.38681 * 120.08748 * 0.02562 * 21 20 19 27 27 O 1.35665 * 120.14751 * 179.97438 * 26 21 20 28 28 H 1.08993 * 109.47258 * 299.99760 * 1 2 3 29 29 H 1.09002 * 109.46884 * 60.00314 * 1 2 3 30 30 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47233 * 60.00742 * 5 3 2 32 32 H 1.08998 * 109.47701 * 300.00117 * 5 3 2 33 33 H 0.97003 * 120.00115 * 179.97438 * 10 9 7 34 34 H 1.07999 * 120.05115 * 0.02562 * 18 17 15 35 35 H 1.07998 * 119.84762 * 179.77201 * 19 18 17 36 36 H 1.08002 * 119.79636 * 180.25106 * 20 19 18 37 37 H 0.96702 * 113.99998 * 90.00477 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2857 3.3030 -1.1805 8 1 3.8500 4.2639 -1.4116 9 6 5.1553 2.6993 -2.0816 10 7 5.8198 1.6214 -1.7316 11 14 5.3789 3.4207 -3.7901 12 1 6.4850 4.4114 -3.7682 13 1 5.7067 2.3338 -4.7475 14 1 4.1228 4.0906 -4.2128 15 6 4.0647 3.3585 1.1613 16 8 3.8441 2.7911 2.2143 17 6 4.4226 4.7886 1.1554 18 6 5.5630 5.2250 0.4753 19 6 5.8945 6.5622 0.4776 20 6 5.0966 7.4791 1.1428 21 6 3.9641 7.0626 1.8140 22 6 3.1039 8.0685 2.5346 23 9 3.6521 9.3463 2.3806 24 9 1.8124 8.0476 1.9971 25 9 3.0482 7.7452 3.8946 26 6 3.6179 5.7198 1.8268 27 8 2.5058 5.3091 2.4864 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9558 0.7808 0.8908 33 1 6.4263 1.1999 -2.3605 34 1 6.1853 4.5145 -0.0486 35 1 6.7779 6.8979 -0.0451 36 1 5.3619 8.5260 1.1360 37 1 1.7053 5.3063 1.9438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566444825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:03 Heat of formation + Delta-G solvation = -291.012652 kcal Electronic energy + Delta-G solvation = -31730.568902 eV Core-core repulsion = 26637.454091 eV Total energy + Delta-G solvation = -5093.114811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.18294 -48.70476 -48.63596 -41.77046 -41.15364 -39.64649 -37.85934 -37.48146 -36.65023 -33.62720 -33.20399 -31.38424 -30.14892 -27.96628 -26.96829 -26.82944 -24.56927 -23.17016 -22.36434 -21.33402 -20.16111 -19.63784 -19.50505 -19.02598 -18.73446 -18.64055 -17.88607 -17.38093 -17.04756 -16.99824 -16.76583 -16.24948 -16.12044 -15.63365 -15.46671 -15.32060 -15.12312 -15.07712 -14.86840 -14.81144 -14.70605 -14.42970 -14.22219 -13.85294 -13.53129 -13.33289 -13.25932 -13.11000 -12.95492 -12.92298 -12.67267 -12.60845 -12.09686 -11.82973 -11.79770 -11.59162 -11.14269 -10.66132 -10.21193 -9.81088 -9.55694 -8.37927 -6.28868 -0.15600 -0.05280 1.22331 1.44538 1.46176 1.52173 1.60937 1.63527 1.99587 2.32536 2.45529 2.62280 2.78828 2.96538 3.03538 3.09871 3.39268 3.88535 4.01675 4.08010 4.19195 4.28237 4.29755 4.30297 4.40442 4.54342 4.63568 4.68241 4.76814 5.01793 5.24701 5.31923 5.35895 5.41908 5.66015 5.82381 6.30708 6.47211 6.78114 7.01370 7.31634 7.80246 8.67679 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004727 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.242610 B = 5921.453211 C = 7606.006854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.450 3.550 4 O -0.532 6.532 5 C 0.129 3.871 6 N -0.425 5.425 7 C -0.352 4.352 8 H 0.083 0.917 9 C 0.021 3.979 10 N -0.887 5.887 11 Si 0.976 3.024 12 H -0.255 1.255 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.525 3.475 16 O -0.612 6.612 17 C -0.146 4.146 18 C -0.017 4.017 19 C -0.129 4.129 20 C -0.036 4.036 21 C -0.235 4.235 22 C 0.524 3.476 23 F -0.168 7.168 24 F -0.181 7.181 25 F -0.181 7.181 26 C 0.175 3.825 27 O -0.495 6.495 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.280 0.720 34 H 0.139 0.861 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 7.890 -0.955 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.293 3.707 4 O -0.421 6.421 5 C 0.004 3.996 6 N -0.144 5.144 7 C -0.479 4.479 8 H 0.100 0.900 9 C -0.184 4.184 10 N -0.522 5.522 11 Si 0.799 3.201 12 H -0.180 1.180 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.316 3.684 16 O -0.498 6.498 17 C -0.149 4.149 18 C -0.036 4.036 19 C -0.146 4.146 20 C -0.054 4.054 21 C -0.237 4.237 22 C 0.470 3.530 23 F -0.149 7.149 24 F -0.163 7.163 25 F -0.162 7.162 26 C 0.128 3.872 27 O -0.307 6.307 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.197 0.803 36 H 0.195 0.805 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.323 7.679 -0.039 7.792 hybrid contribution -0.926 -0.100 -0.884 1.284 sum -2.249 7.579 -0.923 7.959 Atomic orbital electron populations 1.23522 0.75135 1.05700 1.02101 1.86511 1.24976 1.32768 1.84091 1.25035 0.93335 0.81399 0.70928 1.90531 1.67536 1.37450 1.46560 1.20883 0.85006 0.87685 1.06040 1.42971 1.56959 1.08649 1.05781 1.19429 1.26992 1.06064 0.95421 0.89983 1.26234 0.93041 0.96186 1.02922 1.69877 1.24734 1.20319 1.37297 0.85182 0.79238 0.78486 0.77204 1.17969 1.20472 1.19660 1.18666 0.78841 0.87500 0.83415 1.90644 1.55627 1.70940 1.32636 1.20186 0.99758 0.93199 1.01772 1.21660 0.93204 0.97532 0.91183 1.21493 1.01637 0.90992 1.00510 1.21407 0.90140 1.02415 0.91429 1.20292 1.02479 0.91633 1.09328 1.17889 0.78258 0.79881 0.76938 1.93154 1.85316 1.41046 1.95414 1.93185 1.40613 1.96524 1.85956 1.93211 1.96367 1.92637 1.34014 1.18154 0.88780 0.89627 0.90598 1.84734 1.17846 1.88742 1.39397 0.92663 0.92149 0.84411 0.84874 0.88842 0.90997 0.84326 0.80325 0.80497 0.73852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.37 -13.67 10.56 -51.41 -0.54 -14.22 16 3 C 0.45 20.13 7.99 71.24 0.57 20.70 16 4 O -0.53 -25.98 16.05 21.98 0.35 -25.62 16 5 C 0.13 6.06 5.45 85.63 0.47 6.53 16 6 N -0.43 -20.94 1.98 -643.30 -1.27 -22.21 16 7 C -0.35 -16.59 6.57 84.09 0.55 -16.03 16 8 H 0.08 3.89 7.51 -2.91 -0.02 3.87 16 9 C 0.02 0.96 5.11 84.95 0.43 1.39 16 10 N -0.89 -41.65 11.69 21.67 0.25 -41.39 16 11 Si 0.98 35.37 29.56 68.60 2.03 37.40 16 12 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 13 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 14 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 15 C 0.53 26.39 6.66 86.66 0.58 26.96 16 16 O -0.61 -34.31 16.32 1.44 0.02 -34.28 16 17 C -0.15 -6.18 5.03 -20.01 -0.10 -6.28 16 18 C -0.02 -0.60 8.30 22.53 0.19 -0.42 16 19 C -0.13 -3.26 10.02 22.24 0.22 -3.03 16 20 C -0.04 -0.88 9.42 22.31 0.21 -0.67 16 21 C -0.24 -7.27 5.38 -19.80 -0.11 -7.38 16 22 C 0.52 15.06 2.99 71.24 0.21 15.27 16 23 F -0.17 -4.06 15.96 44.97 0.72 -3.34 16 24 F -0.18 -5.30 16.95 44.97 0.76 -4.54 16 25 F -0.18 -5.78 16.95 44.97 0.76 -5.01 16 26 C 0.17 6.75 6.58 22.85 0.15 6.90 16 27 O -0.50 -19.87 11.55 -84.25 -0.97 -20.84 16 28 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 29 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.13 6.26 6.09 -2.39 -0.01 6.25 16 32 H 0.09 4.44 7.56 -2.39 -0.02 4.42 16 33 H 0.28 12.31 8.31 -92.71 -0.77 11.54 16 34 H 0.14 5.23 7.23 -2.91 -0.02 5.21 16 35 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.18 2.92 7.13 -2.91 -0.02 2.90 16 37 H 0.40 13.82 9.06 -74.06 -0.67 13.15 16 Total: -1.00 -65.94 344.32 7.18 -58.76 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.50 Total: 29.38 kcal Atomic # 6 Polarization: 41.35 SS G_CDS: 4.57 Total: 45.93 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.02 Total: -63.60 kcal Atomic # 8 Polarization: -93.83 SS G_CDS: -1.14 Total: -94.97 kcal Atomic # 9 Polarization: -15.14 SS G_CDS: 2.24 Total: -12.90 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Total: -65.94 7.18 -58.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566444825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.255 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds