Wall clock time and date at job start Wed Apr 1 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00198 * 2 1 4 4 C 1.50697 * 109.46698 * 269.99756 * 3 2 1 5 5 H 1.08000 * 120.00706 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99949 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00133 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99659 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47246 * 89.99843 * 8 6 4 10 10 H 1.48504 * 109.46826 * 209.99905 * 8 6 4 11 11 H 1.48499 * 109.47089 * 329.99539 * 8 6 4 12 12 C 1.34778 * 119.99990 * 179.97438 * 2 1 3 13 13 O 1.21364 * 120.00026 * 174.34894 * 12 2 1 14 14 C 1.49315 * 120.00162 * 354.34763 * 12 2 1 15 15 O 1.21395 * 119.99645 * 359.79917 * 14 12 2 16 16 N 1.34770 * 120.00051 * 179.79764 * 14 12 2 17 17 C 1.39496 * 119.99907 * 185.10676 * 16 14 12 18 18 C 1.37854 * 120.24593 * 326.15876 * 17 16 14 19 19 C 1.39109 * 120.84896 * 180.32817 * 18 17 16 20 20 C 1.36337 * 120.95375 * 359.91560 * 19 18 17 21 21 Cl 1.73601 * 120.05417 * 180.02562 * 20 19 18 22 22 C 1.40516 * 119.89348 * 0.06103 * 20 19 18 23 23 C 1.40769 * 121.29209 * 179.97438 * 22 20 19 24 24 C 1.36588 * 118.16389 * 180.02562 * 23 22 20 25 25 C 1.39310 * 119.92038 * 359.97438 * 24 23 22 26 26 N 1.31107 * 121.72002 * 359.97438 * 25 24 23 27 27 C 1.33558 * 121.34245 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47333 * 264.04947 * 1 2 3 29 29 H 1.09005 * 109.46810 * 24.05146 * 1 2 3 30 30 H 1.09004 * 109.46640 * 144.04587 * 1 2 3 31 31 H 1.09004 * 109.47152 * 29.99488 * 3 2 1 32 32 H 1.08996 * 109.47361 * 149.99530 * 3 2 1 33 33 H 0.96996 * 119.99763 * 179.97438 * 7 6 4 34 34 H 0.97002 * 120.00197 * 5.10517 * 16 14 12 35 35 H 1.08000 * 119.57512 * 0.25633 * 18 17 16 36 36 H 1.07999 * 119.52681 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.91616 * 0.06910 * 23 22 20 38 38 H 1.07997 * 120.03899 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.13459 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6729 7 7 3.3458 3.2572 -2.9128 8 14 3.7331 3.9292 -0.2530 9 1 5.1065 3.5081 0.1229 10 1 3.7479 5.3559 -0.6646 11 1 2.8271 3.7593 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3481 -1.1698 -0.1030 14 6 1.3978 -2.4571 0.1285 15 8 0.1886 -2.4543 0.2357 16 7 2.0713 -3.6245 0.1249 17 6 1.3735 -4.8323 0.1369 18 6 0.1773 -4.9365 0.8140 19 6 -0.5256 -6.1366 0.8400 20 6 -0.0518 -7.2408 0.1957 21 17 -0.9484 -8.7266 0.2428 22 6 1.1639 -7.1745 -0.5059 23 6 1.6806 -8.2965 -1.1809 24 6 2.8680 -8.1606 -1.8423 25 6 3.5309 -6.9354 -1.8354 26 7 3.0456 -5.8926 -1.2062 27 6 1.8896 -5.9587 -0.5407 28 1 -0.3634 -0.1065 1.0221 29 1 -0.3633 0.9385 -0.4189 30 1 -0.3633 -0.8319 -0.6034 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.8220 4.0834 -3.0900 34 1 3.0413 -3.6248 0.1139 35 1 -0.2187 -4.0755 1.3320 36 1 -1.4606 -6.1944 1.3774 37 1 1.1525 -9.2385 -1.1766 38 1 3.2923 -9.0020 -2.3699 39 1 4.4688 -6.8420 -2.3629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571420825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:34 Heat of formation + Delta-G solvation = 5.733593 kcal Electronic energy + Delta-G solvation = -26973.045692 eV Core-core repulsion = 22907.657420 eV Total energy + Delta-G solvation = -4065.388272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54947 -40.41995 -38.43561 -37.57091 -36.74828 -35.65030 -34.67514 -32.92762 -32.53133 -31.00678 -29.50033 -28.69413 -26.36412 -24.98607 -24.39413 -24.18750 -22.58224 -21.18053 -19.88285 -18.68681 -18.13204 -17.48190 -17.08406 -16.94628 -16.63888 -15.83049 -15.67960 -15.22619 -15.04262 -14.92432 -14.45807 -14.31885 -13.80665 -13.65849 -13.45203 -13.32714 -13.05006 -12.99284 -12.48750 -12.40060 -12.23896 -12.02541 -11.74546 -11.66488 -11.27374 -11.07355 -10.88535 -10.75666 -10.58205 -10.22444 -10.05500 -9.94325 -9.59713 -9.23134 -8.96510 -8.64530 -8.05483 -7.88581 -6.13638 -4.14005 -0.09146 0.40598 1.36568 1.70533 1.78737 2.45246 2.59295 3.25834 3.31534 3.33184 3.52286 3.69578 3.82959 3.85033 4.29246 4.34250 4.34363 4.43374 4.56821 4.60851 4.91191 4.99809 5.10864 5.18450 5.31503 5.55143 5.57495 5.71754 5.81709 5.82495 5.94611 6.00493 6.16980 6.37200 6.46736 6.51652 6.74794 6.98388 7.11479 7.49607 7.51098 7.69642 7.97663 8.33537 8.54545 8.89592 9.44426 10.99509 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.002479 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.857314 B =11293.000440 C =12228.312343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.558 5.558 3 C 0.214 3.786 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.498 3.502 13 O -0.514 6.514 14 C 0.511 3.489 15 O -0.500 6.500 16 N -0.634 5.634 17 C 0.183 3.817 18 C -0.112 4.112 19 C -0.073 4.073 20 C -0.042 4.042 21 Cl -0.064 7.064 22 C -0.078 4.078 23 C -0.059 4.059 24 C -0.165 4.165 25 C 0.134 3.866 26 N -0.464 5.464 27 C 0.121 3.879 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.432 0.568 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -25.064 7.367 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.289 5.289 3 C 0.094 3.906 4 C -0.571 4.571 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.278 3.722 13 O -0.391 6.391 14 C 0.295 3.705 15 O -0.374 6.374 16 N -0.279 5.279 17 C 0.086 3.914 18 C -0.135 4.135 19 C -0.092 4.092 20 C -0.070 4.070 21 Cl -0.035 7.035 22 C -0.081 4.081 23 C -0.085 4.085 24 C -0.185 4.185 25 C -0.038 4.038 26 N -0.171 5.171 27 C -0.003 4.003 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.271 0.729 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.201 -24.023 7.313 25.866 hybrid contribution 0.255 -0.353 0.380 0.578 sum -5.946 -24.376 7.694 26.244 Atomic orbital electron populations 1.22082 0.78940 1.03776 1.01675 1.47773 1.07688 1.06011 1.67474 1.19891 0.92502 0.79222 0.99003 1.21255 1.37513 1.07465 0.90890 0.90550 1.24849 0.95106 0.97246 0.95664 1.69888 1.41097 1.23503 1.18678 0.86851 0.80141 0.79894 0.82824 1.19793 1.20927 1.18979 1.19416 0.87536 0.84225 0.81022 1.90774 1.13296 1.86347 1.48657 1.20958 0.87667 0.85590 0.76282 1.90669 1.13824 1.86981 1.45919 1.43073 1.12240 1.02651 1.69956 1.17535 0.93769 0.84463 0.95667 1.21305 0.94542 0.98650 0.98989 1.20733 1.00220 0.90467 0.97785 1.20534 0.94044 0.88860 1.03549 1.98360 1.74008 1.33682 1.97428 1.18313 0.94830 0.94824 1.00136 1.21505 0.95367 0.97827 0.93773 1.21954 0.96197 0.99611 1.00725 1.23050 0.98995 0.87704 0.94080 1.67969 1.10622 1.31030 1.07501 1.18501 0.92643 0.91758 0.97369 0.92938 0.90804 0.89756 0.94292 0.94229 0.92413 0.72896 0.82110 0.83885 0.83813 0.84013 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 9.26 59.85 0.55 1.89 16 2 N -0.56 -11.69 2.86 -183.52 -0.52 -12.22 16 3 C 0.21 5.12 4.16 -5.19 -0.02 5.09 16 4 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 8 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 12 C 0.50 10.18 7.71 -11.65 -0.09 10.09 16 13 O -0.51 -11.90 16.12 5.48 0.09 -11.81 16 14 C 0.51 8.59 7.61 -11.65 -0.09 8.50 16 15 O -0.50 -8.17 10.61 5.46 0.06 -8.12 16 16 N -0.63 -9.40 5.18 -10.06 -0.05 -9.45 16 17 C 0.18 2.46 6.36 -83.38 -0.53 1.93 16 18 C -0.11 -1.32 8.69 -39.40 -0.34 -1.66 16 19 C -0.07 -0.71 9.71 -39.94 -0.39 -1.10 16 20 C -0.04 -0.41 6.32 -39.41 -0.25 -0.66 16 21 Cl -0.06 -0.53 27.52 -51.86 -1.43 -1.96 16 22 C -0.08 -0.85 5.74 -106.79 -0.61 -1.46 16 23 C -0.06 -0.50 9.52 -39.22 -0.37 -0.87 16 24 C -0.17 -1.21 10.03 -39.78 -0.40 -1.61 16 25 C 0.13 1.23 11.15 -17.46 -0.19 1.04 16 26 N -0.46 -5.86 9.90 -10.85 -0.11 -5.97 16 27 C 0.12 1.55 6.62 -84.69 -0.56 0.99 16 28 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 30 H 0.08 1.42 5.85 -51.93 -0.30 1.12 16 31 H 0.04 0.88 7.13 -51.93 -0.37 0.51 16 32 H 0.04 0.98 6.93 -51.93 -0.36 0.62 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.43 6.33 8.04 -40.82 -0.33 6.00 16 35 H 0.16 1.93 6.05 -52.49 -0.32 1.61 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.14 0.94 7.04 -52.49 -0.37 0.57 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -33.42 350.40 -8.06 -41.48 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.75 Total: 4.20 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -3.74 Total: 8.71 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.09 Total: -54.15 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.15 Total: -19.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.42 -8.06 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571420825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.215 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds