Wall clock time and date at job start Wed Apr 1 2020 04:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00198 * 2 1 4 4 C 1.50697 * 109.46698 * 269.99756 * 3 2 1 5 5 H 1.08000 * 120.00706 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99949 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00133 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99659 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47246 * 89.99843 * 8 6 4 10 10 H 1.48504 * 109.46826 * 209.99905 * 8 6 4 11 11 H 1.48499 * 109.47089 * 329.99539 * 8 6 4 12 12 C 1.34778 * 119.99990 * 179.97438 * 2 1 3 13 13 O 1.21364 * 120.00026 * 174.34894 * 12 2 1 14 14 C 1.49315 * 120.00162 * 354.34763 * 12 2 1 15 15 O 1.21395 * 119.99645 * 359.79917 * 14 12 2 16 16 N 1.34770 * 120.00051 * 179.79764 * 14 12 2 17 17 C 1.39496 * 119.99907 * 185.10676 * 16 14 12 18 18 C 1.37854 * 120.24593 * 326.15876 * 17 16 14 19 19 C 1.39109 * 120.84896 * 180.32817 * 18 17 16 20 20 C 1.36337 * 120.95375 * 359.91560 * 19 18 17 21 21 Cl 1.73601 * 120.05417 * 180.02562 * 20 19 18 22 22 C 1.40516 * 119.89348 * 0.06103 * 20 19 18 23 23 C 1.40769 * 121.29209 * 179.97438 * 22 20 19 24 24 C 1.36588 * 118.16389 * 180.02562 * 23 22 20 25 25 C 1.39310 * 119.92038 * 359.97438 * 24 23 22 26 26 N 1.31107 * 121.72002 * 359.97438 * 25 24 23 27 27 C 1.33558 * 121.34245 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47333 * 264.04947 * 1 2 3 29 29 H 1.09005 * 109.46810 * 24.05146 * 1 2 3 30 30 H 1.09004 * 109.46640 * 144.04587 * 1 2 3 31 31 H 1.09004 * 109.47152 * 29.99488 * 3 2 1 32 32 H 1.08996 * 109.47361 * 149.99530 * 3 2 1 33 33 H 0.96996 * 119.99763 * 179.97438 * 7 6 4 34 34 H 0.97002 * 120.00197 * 5.10517 * 16 14 12 35 35 H 1.08000 * 119.57512 * 0.25633 * 18 17 16 36 36 H 1.07999 * 119.52681 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.91616 * 0.06910 * 23 22 20 38 38 H 1.07997 * 120.03899 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.13459 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6729 7 7 3.3458 3.2572 -2.9128 8 14 3.7331 3.9292 -0.2530 9 1 5.1065 3.5081 0.1229 10 1 3.7479 5.3559 -0.6646 11 1 2.8271 3.7593 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3481 -1.1698 -0.1030 14 6 1.3978 -2.4571 0.1285 15 8 0.1886 -2.4543 0.2357 16 7 2.0713 -3.6245 0.1249 17 6 1.3735 -4.8323 0.1369 18 6 0.1773 -4.9365 0.8140 19 6 -0.5256 -6.1366 0.8400 20 6 -0.0518 -7.2408 0.1957 21 17 -0.9484 -8.7266 0.2428 22 6 1.1639 -7.1745 -0.5059 23 6 1.6806 -8.2965 -1.1809 24 6 2.8680 -8.1606 -1.8423 25 6 3.5309 -6.9354 -1.8354 26 7 3.0456 -5.8926 -1.2062 27 6 1.8896 -5.9587 -0.5407 28 1 -0.3634 -0.1065 1.0221 29 1 -0.3633 0.9385 -0.4189 30 1 -0.3633 -0.8319 -0.6034 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.8220 4.0834 -3.0900 34 1 3.0413 -3.6248 0.1139 35 1 -0.2187 -4.0755 1.3320 36 1 -1.4606 -6.1944 1.3774 37 1 1.1525 -9.2385 -1.1766 38 1 3.2923 -9.0020 -2.3699 39 1 4.4688 -6.8420 -2.3629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571420825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:33 Heat of formation + Delta-G solvation = -17.044348 kcal Electronic energy + Delta-G solvation = -26974.033418 eV Core-core repulsion = 22907.657420 eV Total energy + Delta-G solvation = -4066.375997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.54811 -41.59743 -39.85889 -38.40295 -37.73859 -37.01465 -35.90496 -34.66861 -33.74926 -31.76981 -30.83214 -30.24181 -27.81984 -26.37334 -25.41946 -24.97096 -24.06566 -22.35291 -21.23106 -19.55448 -19.29979 -19.19420 -18.52474 -17.95939 -17.84227 -17.21149 -17.04085 -16.55053 -16.24193 -15.90302 -15.75248 -15.35776 -15.16437 -14.89053 -14.52048 -14.41703 -14.24251 -13.98953 -13.86462 -13.78695 -13.71405 -13.29529 -13.07733 -12.86200 -12.59365 -12.49553 -12.33052 -12.03967 -11.95322 -11.76068 -11.58592 -10.99653 -10.83968 -10.73653 -10.44313 -9.96793 -9.64490 -8.91936 -8.34640 -6.41974 -0.90434 -0.35889 0.19791 0.77190 0.92363 1.18147 1.36431 1.39506 1.48280 1.74366 2.08630 2.31489 2.43767 2.88228 2.99177 3.08994 3.17421 3.52911 3.65306 3.69709 3.93919 4.06716 4.31083 4.36228 4.39034 4.57286 4.61090 4.69261 4.74292 4.81335 4.83679 4.94077 4.95562 5.10338 5.14999 5.33706 5.38911 5.42400 5.63593 5.80205 6.14810 6.26602 6.52365 6.59546 6.78508 6.88531 7.21988 8.82399 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.002479 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.857314 B =11293.000440 C =12228.312343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.568 5.568 3 C 0.221 3.779 4 C -0.542 4.542 5 H 0.026 0.974 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.233 1.233 12 C 0.491 3.509 13 O -0.551 6.551 14 C 0.520 3.480 15 O -0.498 6.498 16 N -0.625 5.625 17 C 0.148 3.852 18 C -0.106 4.106 19 C -0.078 4.078 20 C -0.034 4.034 21 Cl -0.044 7.044 22 C -0.092 4.092 23 C -0.061 4.061 24 C -0.153 4.153 25 C 0.132 3.868 26 N -0.507 5.507 27 C 0.104 3.896 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.270 0.730 34 H 0.429 0.571 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 -27.130 8.919 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.299 5.299 3 C 0.099 3.901 4 C -0.581 4.581 5 H 0.044 0.956 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.156 1.156 12 C 0.272 3.728 13 O -0.430 6.430 14 C 0.303 3.697 15 O -0.373 6.373 16 N -0.270 5.270 17 C 0.052 3.948 18 C -0.128 4.128 19 C -0.097 4.097 20 C -0.063 4.063 21 Cl -0.015 7.015 22 C -0.096 4.096 23 C -0.087 4.087 24 C -0.172 4.172 25 C -0.040 4.040 26 N -0.215 5.215 27 C -0.019 4.019 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.268 0.732 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.200 0.800 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.099 -26.150 8.878 28.514 hybrid contribution 0.514 0.028 -0.245 0.570 sum -6.585 -26.122 8.633 28.289 Atomic orbital electron populations 1.22245 0.76624 1.03809 1.03556 1.47857 1.09162 1.05393 1.67438 1.19647 0.93188 0.81199 0.96038 1.21458 1.37470 1.07119 0.92018 0.95576 1.25887 0.95051 0.98805 0.98857 1.70050 1.42378 1.24454 1.21506 0.85677 0.79801 0.77607 0.79666 1.19740 1.20135 1.15608 1.20064 0.87390 0.85462 0.79847 1.90736 1.14980 1.87171 1.50122 1.20091 0.87377 0.84920 0.77322 1.90658 1.13221 1.86842 1.46551 1.42877 1.12077 1.02711 1.69289 1.17766 0.94868 0.84100 0.98070 1.21357 0.93898 0.99356 0.98213 1.20935 1.00969 0.89661 0.98106 1.20671 0.93698 0.89578 1.02305 1.98369 1.73440 1.32386 1.97278 1.18533 0.95198 0.94990 1.00847 1.21834 0.95854 0.97810 0.93179 1.22353 0.95335 0.99897 0.99622 1.23657 0.99722 0.87770 0.92852 1.67961 1.11345 1.32991 1.09218 1.18594 0.93232 0.92199 0.97852 0.89973 0.90829 0.89701 0.91780 0.94884 0.92112 0.73213 0.82501 0.81383 0.81645 0.80029 0.79355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.66 9.26 127.77 1.18 3.84 16 2 N -0.57 -24.04 2.86 -852.88 -2.44 -26.48 16 3 C 0.22 10.56 4.16 85.63 0.36 10.92 16 4 C -0.54 -31.84 9.94 25.60 0.25 -31.59 16 5 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 6 C 0.01 0.72 5.47 84.66 0.46 1.19 16 7 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 8 Si 0.95 43.24 27.47 68.60 1.88 45.13 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 12 C 0.49 20.68 7.71 87.23 0.67 21.35 16 13 O -0.55 -26.63 16.12 -3.29 -0.05 -26.68 16 14 C 0.52 17.91 7.61 87.23 0.66 18.57 16 15 O -0.50 -16.27 10.61 -3.39 -0.04 -16.31 16 16 N -0.63 -19.26 5.18 -304.07 -1.57 -20.83 16 17 C 0.15 4.04 6.36 38.56 0.25 4.29 16 18 C -0.11 -2.46 8.69 22.39 0.19 -2.26 16 19 C -0.08 -1.41 9.71 22.04 0.21 -1.19 16 20 C -0.03 -0.62 6.32 22.38 0.14 -0.48 16 21 Cl -0.04 -0.62 27.52 -2.72 -0.07 -0.69 16 22 C -0.09 -1.88 5.74 -21.27 -0.12 -2.00 16 23 C -0.06 -0.88 9.52 22.50 0.21 -0.66 16 24 C -0.15 -1.79 10.03 22.14 0.22 -1.57 16 25 C 0.13 2.23 11.15 85.06 0.95 3.18 16 26 N -0.51 -12.85 9.90 -188.26 -1.86 -14.71 16 27 C 0.10 2.67 6.62 40.45 0.27 2.93 16 28 H 0.08 2.27 8.13 -2.39 -0.02 2.26 16 29 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 30 H 0.08 2.85 5.85 -2.38 -0.01 2.83 16 31 H 0.06 2.76 7.13 -2.39 -0.02 2.74 16 32 H 0.03 1.63 6.93 -2.39 -0.02 1.62 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.43 13.39 8.04 -92.71 -0.74 12.64 16 35 H 0.16 3.70 6.05 -2.91 -0.02 3.69 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.17 1.59 7.04 -2.91 -0.02 1.57 16 38 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 39 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -76.31 350.40 2.40 -73.91 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.33 Total: 19.41 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 5.92 Total: 26.50 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.57 Total: -121.28 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.09 Total: -42.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.69 kcal Total: -76.31 2.40 -73.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571420825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.865 kcal (2) G-P(sol) polarization free energy of solvation -76.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds