Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00279 * 2 1 4 4 C 1.52997 * 109.47221 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47289 * 64.99848 * 4 3 2 6 6 C 1.46502 * 119.99937 * 85.00032 * 5 4 3 7 7 C 1.50698 * 109.46865 * 85.00033 * 6 5 4 8 8 H 1.07995 * 120.00536 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99364 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99252 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00489 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47087 * 89.99792 * 11 9 7 13 13 H 1.48500 * 109.47388 * 210.00066 * 11 9 7 14 14 H 1.48497 * 109.46999 * 330.00022 * 11 9 7 15 15 S 1.65596 * 119.99829 * 265.00303 * 5 4 3 16 16 O 1.42102 * 106.39988 * 203.53886 * 15 5 4 17 17 O 1.42093 * 106.40335 * 336.45537 * 15 5 4 18 18 C 1.76205 * 107.21728 * 89.99913 * 15 5 4 19 19 C 1.34155 * 125.42604 * 89.99902 * 18 15 5 20 20 C 1.47065 * 105.94525 * 179.97438 * 19 18 15 21 21 C 1.47234 * 127.19896 * 179.97438 * 20 19 18 22 22 O 1.21537 * 119.99981 * 0.02562 * 21 20 19 23 23 O 1.34768 * 119.99918 * 180.02562 * 21 20 19 24 24 C 1.45205 * 116.99878 * 180.02562 * 23 21 20 25 25 C 1.36490 * 105.59690 * 359.97438 * 20 19 18 26 26 O 1.33625 * 108.38796 * 359.75759 * 25 20 19 27 27 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46848 * 300.00631 * 1 2 3 29 29 H 1.09004 * 109.46489 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.47587 * 59.99890 * 3 2 1 31 31 H 1.09002 * 109.47037 * 300.00040 * 3 2 1 32 32 H 1.09001 * 109.47289 * 304.99720 * 4 3 2 33 33 H 1.09004 * 109.47261 * 184.99976 * 4 3 2 34 34 H 1.08999 * 109.46889 * 205.00670 * 6 5 4 35 35 H 1.09003 * 109.46675 * 325.00051 * 6 5 4 36 36 H 0.97010 * 119.99262 * 179.97438 * 10 9 7 37 37 H 1.07997 * 127.03009 * 0.02562 * 19 18 15 38 38 H 1.08999 * 109.46818 * 299.99381 * 24 23 21 39 39 H 1.08993 * 109.47513 * 59.99618 * 24 23 21 40 40 H 1.09003 * 109.46703 * 180.02562 * 24 23 21 41 41 H 1.08003 * 125.80573 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5637 -1.2509 6 6 4.1830 1.3879 -2.4444 7 6 5.5702 1.9758 -2.4153 8 1 6.2323 1.7571 -1.5906 9 6 5.9946 2.7921 -3.4423 10 7 7.2054 3.3047 -3.4172 11 14 4.8498 3.1698 -4.8692 12 1 4.0588 4.3880 -4.5601 13 1 5.6502 3.3982 -6.0990 14 1 3.9303 2.0236 -5.0829 15 16 4.2424 -1.0695 -1.3164 16 8 5.1448 -1.2864 -2.3924 17 8 4.5071 -1.4867 0.0159 18 6 2.7212 -1.8270 -1.7822 19 6 2.3288 -2.0737 -3.0411 20 6 1.0070 -2.7097 -2.9350 21 6 0.1512 -3.1736 -4.0396 22 8 0.5214 -3.0457 -5.1901 23 8 -1.0427 -3.7399 -3.7748 24 6 -1.8332 -4.1742 -4.9128 25 6 0.7398 -2.7799 -1.5984 26 8 1.7735 -2.2553 -0.9337 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9786 2.1764 0.0902 34 1 4.0681 0.7713 -3.3359 35 1 3.4476 2.1924 -2.4619 36 1 7.5041 3.8787 -4.1399 37 1 2.8728 -1.8516 -3.9473 38 1 -2.0503 -3.3185 -5.5521 39 1 -1.2750 -4.9191 -5.4799 40 1 -2.7679 -4.6105 -4.5606 41 1 -0.1536 -3.1927 -1.1535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611082360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = -166.713761 kcal Electronic energy + Delta-G solvation = -30117.155000 eV Core-core repulsion = 25706.730885 eV Total energy + Delta-G solvation = -4410.424115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.101 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.65247 -40.32935 -38.05118 -36.82820 -36.61878 -35.73726 -35.39806 -33.16177 -32.54617 -30.57227 -29.90477 -28.01376 -27.32321 -26.09592 -24.17728 -22.89186 -22.38129 -21.51626 -20.98116 -19.38361 -18.01196 -17.35236 -17.25059 -16.93922 -16.71786 -16.49563 -16.26720 -16.20058 -15.80438 -15.54634 -15.25571 -14.83779 -14.25183 -13.90675 -13.84087 -13.52358 -13.29168 -13.10061 -12.82686 -12.57700 -12.38733 -12.33558 -12.11891 -11.79988 -11.64172 -11.51325 -11.30668 -11.26162 -11.22014 -11.10585 -10.85927 -10.63394 -10.54733 -10.25257 -10.09765 -9.65083 -9.59852 -9.30483 -8.64498 -8.29807 -6.13089 -4.13486 0.63080 0.93524 1.40814 2.29194 2.81214 2.86406 3.22772 3.31592 3.32974 3.46110 3.82795 4.15918 4.34003 4.34396 4.51716 4.79403 4.82191 4.87871 4.94630 5.13699 5.14976 5.22639 5.24809 5.30107 5.36601 5.41557 5.44275 5.50819 5.58373 5.68724 5.91094 6.05529 6.21320 6.25421 6.59940 6.63905 6.92811 7.13456 7.27313 7.49759 7.51412 8.42232 8.91578 9.45397 11.00008 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.004465 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.260419 B = 6270.000704 C = 7274.455017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.034 3.966 4 C 0.123 3.877 5 N -0.962 5.962 6 C 0.222 3.778 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.077 3.923 10 N -0.891 5.891 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.263 1.263 15 S 2.709 3.291 16 O -0.919 6.919 17 O -0.948 6.948 18 C -0.539 4.539 19 C -0.050 4.050 20 C -0.251 4.251 21 C 0.539 3.461 22 O -0.500 6.500 23 O -0.360 6.360 24 C 0.038 3.962 25 C 0.080 3.920 26 O -0.088 6.088 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.177 0.823 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 -10.206 4.960 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.044 4.044 4 C -0.004 4.004 5 N -0.802 5.802 6 C 0.099 3.901 7 C -0.574 4.574 8 H 0.100 0.900 9 C -0.126 4.126 10 N -0.529 5.529 11 Si 0.695 3.305 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.188 1.188 15 S 2.789 3.211 16 O -0.909 6.909 17 O -0.938 6.938 18 C -0.664 4.664 19 C -0.071 4.071 20 C -0.254 4.254 21 C 0.384 3.616 22 O -0.389 6.389 23 O -0.277 6.277 24 C -0.055 4.055 25 C 0.004 3.996 26 O 0.022 5.978 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.194 0.806 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.090 -10.652 4.947 22.413 hybrid contribution -1.788 0.501 -1.686 2.508 sum -20.878 -10.151 3.261 23.443 Atomic orbital electron populations 1.22671 0.81865 1.01953 0.99765 1.87936 1.19108 1.27997 1.95351 1.23246 0.95478 0.84934 1.00774 1.21424 0.90773 1.01964 0.86190 1.57182 1.81680 1.23030 1.18304 1.19581 0.98233 0.90905 0.81332 1.21321 0.97560 1.29400 1.09074 0.90009 1.24830 0.94975 0.95279 0.97558 1.69886 1.17277 1.32632 1.33097 0.86979 0.81410 0.79254 0.82897 1.20013 1.20724 1.18802 1.02217 0.72174 0.72786 0.73888 1.93692 1.55765 1.84977 1.56434 1.93527 1.82676 1.81384 1.36208 1.36471 1.15402 1.18356 0.96202 1.22853 0.92454 0.94002 0.97776 1.20577 0.97875 1.14668 0.92247 1.19957 0.79521 0.74436 0.87695 1.90883 1.72856 1.52921 1.22215 1.86514 1.30161 1.71682 1.39378 1.23285 0.94346 1.00296 0.87608 1.25095 0.91513 0.92231 0.90774 1.84079 1.22324 1.56639 1.34794 0.90457 0.94106 0.94479 0.92283 0.92558 0.88665 0.87075 0.94608 0.94975 0.92401 0.80586 0.91718 0.91698 0.87892 0.76032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.48 101.05 1.06 1.39 16 2 O -0.39 -5.11 7.18 -57.66 -0.41 -5.53 16 3 C 0.03 0.44 6.28 37.16 0.23 0.67 16 4 C 0.12 1.92 6.06 -4.04 -0.02 1.89 16 5 N -0.96 -18.56 2.71 -115.66 -0.31 -18.88 16 6 C 0.22 4.94 4.17 -5.19 -0.02 4.92 16 7 C -0.53 -14.45 9.94 -34.44 -0.34 -14.79 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 10 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 11 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 15 S 2.71 53.08 5.65 -107.50 -0.61 52.47 16 16 O -0.92 -20.93 16.79 -57.17 -0.96 -21.89 16 17 O -0.95 -19.36 16.57 -57.30 -0.95 -20.31 16 18 C -0.54 -8.90 6.34 29.29 0.19 -8.71 16 19 C -0.05 -0.81 10.70 -37.44 -0.40 -1.21 16 20 C -0.25 -3.42 6.31 -103.30 -0.65 -4.07 16 21 C 0.54 7.32 7.95 34.39 0.27 7.59 16 22 O -0.50 -8.28 16.77 -19.30 -0.32 -8.60 16 23 O -0.36 -3.74 10.42 -40.68 -0.42 -4.17 16 24 C 0.04 0.28 10.57 101.05 1.07 1.35 16 25 C 0.08 0.87 10.62 30.10 0.32 1.19 16 26 O -0.09 -1.24 7.87 -14.83 -0.12 -1.36 16 27 H 0.08 0.62 6.88 -51.93 -0.36 0.27 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.10 1.45 6.91 -51.93 -0.36 1.09 16 33 H 0.11 1.67 8.11 -51.93 -0.42 1.25 16 34 H 0.04 0.81 6.67 -51.93 -0.35 0.47 16 35 H 0.03 0.66 7.48 -51.93 -0.39 0.27 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.22 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -35.79 366.48 -6.14 -41.93 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.26 Total: -1.55 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 1.60 Total: -7.71 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.46 Total: -44.68 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -3.19 Total: -61.87 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.61 Total: 52.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.79 -6.14 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611082360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.781 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds