Wall clock time and date at job start Wed Apr 1 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00279 * 2 1 4 4 C 1.52997 * 109.47221 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47289 * 64.99848 * 4 3 2 6 6 C 1.46502 * 119.99937 * 85.00032 * 5 4 3 7 7 C 1.50698 * 109.46865 * 85.00033 * 6 5 4 8 8 H 1.07995 * 120.00536 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99364 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99252 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00489 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47087 * 89.99792 * 11 9 7 13 13 H 1.48500 * 109.47388 * 210.00066 * 11 9 7 14 14 H 1.48497 * 109.46999 * 330.00022 * 11 9 7 15 15 S 1.65596 * 119.99829 * 265.00303 * 5 4 3 16 16 O 1.42102 * 106.39988 * 203.53886 * 15 5 4 17 17 O 1.42093 * 106.40335 * 336.45537 * 15 5 4 18 18 C 1.76205 * 107.21728 * 89.99913 * 15 5 4 19 19 C 1.34155 * 125.42604 * 89.99902 * 18 15 5 20 20 C 1.47065 * 105.94525 * 179.97438 * 19 18 15 21 21 C 1.47234 * 127.19896 * 179.97438 * 20 19 18 22 22 O 1.21537 * 119.99981 * 0.02562 * 21 20 19 23 23 O 1.34768 * 119.99918 * 180.02562 * 21 20 19 24 24 C 1.45205 * 116.99878 * 180.02562 * 23 21 20 25 25 C 1.36490 * 105.59690 * 359.97438 * 20 19 18 26 26 O 1.33625 * 108.38796 * 359.75759 * 25 20 19 27 27 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46848 * 300.00631 * 1 2 3 29 29 H 1.09004 * 109.46489 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.47587 * 59.99890 * 3 2 1 31 31 H 1.09002 * 109.47037 * 300.00040 * 3 2 1 32 32 H 1.09001 * 109.47289 * 304.99720 * 4 3 2 33 33 H 1.09004 * 109.47261 * 184.99976 * 4 3 2 34 34 H 1.08999 * 109.46889 * 205.00670 * 6 5 4 35 35 H 1.09003 * 109.46675 * 325.00051 * 6 5 4 36 36 H 0.97010 * 119.99262 * 179.97438 * 10 9 7 37 37 H 1.07997 * 127.03009 * 0.02562 * 19 18 15 38 38 H 1.08999 * 109.46818 * 299.99381 * 24 23 21 39 39 H 1.08993 * 109.47513 * 59.99618 * 24 23 21 40 40 H 1.09003 * 109.46703 * 180.02562 * 24 23 21 41 41 H 1.08003 * 125.80573 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5637 -1.2509 6 6 4.1830 1.3879 -2.4444 7 6 5.5702 1.9758 -2.4153 8 1 6.2323 1.7571 -1.5906 9 6 5.9946 2.7921 -3.4423 10 7 7.2054 3.3047 -3.4172 11 14 4.8498 3.1698 -4.8692 12 1 4.0588 4.3880 -4.5601 13 1 5.6502 3.3982 -6.0990 14 1 3.9303 2.0236 -5.0829 15 16 4.2424 -1.0695 -1.3164 16 8 5.1448 -1.2864 -2.3924 17 8 4.5071 -1.4867 0.0159 18 6 2.7212 -1.8270 -1.7822 19 6 2.3288 -2.0737 -3.0411 20 6 1.0070 -2.7097 -2.9350 21 6 0.1512 -3.1736 -4.0396 22 8 0.5214 -3.0457 -5.1901 23 8 -1.0427 -3.7399 -3.7748 24 6 -1.8332 -4.1742 -4.9128 25 6 0.7398 -2.7799 -1.5984 26 8 1.7735 -2.2553 -0.9337 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9786 2.1764 0.0902 34 1 4.0681 0.7713 -3.3359 35 1 3.4476 2.1924 -2.4619 36 1 7.5041 3.8787 -4.1399 37 1 2.8728 -1.8516 -3.9473 38 1 -2.0503 -3.3185 -5.5521 39 1 -1.2750 -4.9191 -5.4799 40 1 -2.7679 -4.6105 -4.5606 41 1 -0.1536 -3.1927 -1.1535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611082360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:31 Heat of formation + Delta-G solvation = -193.850550 kcal Electronic energy + Delta-G solvation = -30118.331739 eV Core-core repulsion = 25706.730885 eV Total energy + Delta-G solvation = -4411.600854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.75801 -41.28152 -39.08695 -38.44476 -37.57253 -37.18041 -37.01776 -34.57260 -34.27640 -31.69122 -31.32867 -28.91632 -28.70789 -26.98729 -25.13724 -24.49381 -23.65260 -22.92182 -22.04007 -20.52794 -19.52935 -18.98882 -18.64412 -18.29374 -17.72241 -17.64857 -17.26260 -17.21279 -16.98219 -16.83420 -16.35690 -16.23887 -15.72289 -15.38593 -14.87555 -14.50921 -14.41801 -14.38413 -14.22141 -14.08663 -13.72447 -13.57653 -13.31214 -13.19748 -13.06617 -13.02549 -12.78204 -12.69073 -12.46551 -12.31684 -11.99496 -11.90796 -11.89119 -11.83322 -11.70323 -11.25904 -10.76339 -10.52823 -10.39146 -9.88281 -8.27517 -6.32819 -0.86339 -0.04211 0.15764 1.35871 1.38055 1.41241 1.48961 1.73615 1.80668 2.08274 2.35334 2.61361 3.03391 3.06253 3.29691 3.38711 3.55638 3.95738 4.02719 4.06625 4.22231 4.29991 4.31217 4.31784 4.53964 4.59703 4.63474 4.68294 4.69670 4.80238 4.81070 4.87875 4.92427 5.05490 5.15726 5.28096 5.47138 5.52071 5.68936 6.29457 6.35748 6.55625 6.71386 7.29990 8.89479 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.004465 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.260419 B = 6270.000704 C = 7274.455017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.041 3.959 4 C 0.112 3.888 5 N -0.969 5.969 6 C 0.231 3.769 7 C -0.540 4.540 8 H 0.039 0.961 9 C 0.015 3.985 10 N -0.944 5.944 11 Si 0.933 3.067 12 H -0.251 1.251 13 H -0.286 1.286 14 H -0.246 1.246 15 S 2.720 3.280 16 O -0.965 6.965 17 O -0.966 6.966 18 C -0.549 4.549 19 C -0.057 4.057 20 C -0.271 4.271 21 C 0.545 3.455 22 O -0.540 6.540 23 O -0.348 6.348 24 C 0.030 3.970 25 C 0.124 3.876 26 O -0.091 6.091 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.268 0.732 37 H 0.165 0.835 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.143 0.857 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.857 -11.010 5.387 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.037 4.037 4 C -0.013 4.013 5 N -0.808 5.808 6 C 0.106 3.894 7 C -0.579 4.579 8 H 0.057 0.943 9 C -0.183 4.183 10 N -0.584 5.584 11 Si 0.755 3.245 12 H -0.175 1.175 13 H -0.211 1.211 14 H -0.170 1.170 15 S 2.806 3.194 16 O -0.955 6.955 17 O -0.956 6.956 18 C -0.679 4.679 19 C -0.078 4.078 20 C -0.274 4.274 21 C 0.391 3.609 22 O -0.432 6.432 23 O -0.264 6.264 24 C -0.063 4.063 25 C 0.049 3.951 26 O 0.019 5.981 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.182 0.818 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.161 0.839 41 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -23.763 -11.442 5.436 26.929 hybrid contribution -0.450 0.602 -1.717 1.875 sum -24.213 -10.840 3.719 26.788 Atomic orbital electron populations 1.22919 0.79915 1.03563 1.00688 1.87901 1.21237 1.27971 1.95568 1.23116 0.92927 0.85372 1.02250 1.21678 0.93486 1.01560 0.84535 1.57050 1.82371 1.22732 1.18688 1.19338 0.95873 0.91634 0.82526 1.21630 0.99396 1.29162 1.07689 0.94271 1.25773 0.96618 0.95198 1.00725 1.70050 1.19706 1.34143 1.34460 0.85941 0.79546 0.80406 0.78596 1.17493 1.21135 1.16996 1.01268 0.72558 0.72800 0.72777 1.93633 1.58613 1.85664 1.57626 1.93492 1.83686 1.81665 1.36751 1.35321 1.15532 1.20554 0.96502 1.22947 0.93823 0.93829 0.97210 1.20595 0.97177 1.15967 0.93679 1.19942 0.80163 0.73860 0.86914 1.90871 1.73901 1.54753 1.23668 1.86500 1.28763 1.70788 1.40379 1.23647 0.95226 1.00245 0.87191 1.26139 0.91073 0.88275 0.89639 1.84088 1.22600 1.56893 1.34562 0.88559 0.92444 0.94329 0.89234 0.92484 0.88734 0.87179 0.94878 0.92205 0.92324 0.81785 0.92012 0.92024 0.83929 0.70305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.48 113.37 1.19 1.57 16 2 O -0.41 -9.64 7.18 -127.54 -0.92 -10.56 16 3 C 0.04 0.97 6.28 71.98 0.45 1.42 16 4 C 0.11 3.47 6.06 86.38 0.52 4.00 16 5 N -0.97 -37.80 2.71 -519.83 -1.41 -39.21 16 6 C 0.23 10.28 4.17 85.63 0.36 10.63 16 7 C -0.54 -30.23 9.94 25.60 0.25 -29.98 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.02 0.88 5.47 84.66 0.46 1.34 16 10 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 11 Si 0.93 42.28 27.47 68.60 1.88 44.16 16 12 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 15 S 2.72 109.24 5.65 -56.49 -0.32 108.92 16 16 O -0.96 -46.23 16.79 -128.00 -2.15 -48.38 16 17 O -0.97 -40.31 16.57 -127.88 -2.12 -42.43 16 18 C -0.55 -17.67 6.34 66.89 0.42 -17.25 16 19 C -0.06 -1.79 10.70 23.66 0.25 -1.54 16 20 C -0.27 -6.69 6.31 -19.00 -0.12 -6.81 16 21 C 0.54 13.55 7.95 70.19 0.56 14.11 16 22 O -0.54 -17.43 16.77 19.72 0.33 -17.09 16 23 O -0.35 -5.96 10.42 -56.79 -0.59 -6.55 16 24 C 0.03 0.34 10.57 113.37 1.20 1.54 16 25 C 0.12 2.18 10.62 67.41 0.72 2.89 16 26 O -0.09 -2.31 7.87 26.23 0.21 -2.11 16 27 H 0.10 1.06 6.88 -2.39 -0.02 1.04 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 32 H 0.09 2.90 6.91 -2.39 -0.02 2.88 16 33 H 0.11 3.35 8.11 -2.38 -0.02 3.33 16 34 H 0.03 1.51 6.67 -2.39 -0.02 1.49 16 35 H 0.06 2.35 7.48 -2.39 -0.02 2.34 16 36 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 37 H 0.16 5.47 8.06 -2.91 -0.02 5.45 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.28 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -82.69 366.48 2.48 -80.21 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.00 Total: 9.29 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 6.27 Total: -18.07 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -1.11 Total: -97.39 kcal Atomic # 8 Polarization: -121.88 SS G_CDS: -5.24 Total: -127.12 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 109.24 SS G_CDS: -0.32 Total: 108.92 kcal Total: -82.69 2.48 -80.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611082360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.644 kcal (2) G-P(sol) polarization free energy of solvation -82.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds