Wall clock time and date at job start Wed Apr 1 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34651 * 116.99907 * 2 1 4 4 O 1.21406 * 120.00029 * 0.02562 * 3 2 1 5 5 C 1.48239 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.42304 * 126.94232 * 180.23195 * 5 3 2 7 7 C 1.35310 * 103.91798 * 180.12774 * 6 5 3 8 8 C 1.50701 * 126.66195 * 179.97438 * 7 6 5 9 9 O 1.45208 * 109.47227 * 89.70603 * 8 7 6 10 10 C 1.34756 * 116.99911 * 180.02562 * 9 8 7 11 11 O 1.21505 * 120.00227 * 0.02562 * 10 9 8 12 12 C 1.47395 * 119.99656 * 180.02562 * 10 9 8 13 13 C 1.39734 * 120.20505 * 359.97438 * 12 10 9 14 14 C 1.37806 * 119.91170 * 180.02562 * 13 12 10 15 15 C 1.38587 * 120.33557 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40896 * 359.97438 * 15 14 13 17 17 C 1.38822 * 120.08290 * 0.02562 * 16 15 14 18 18 O 1.35508 * 120.16966 * 179.97438 * 17 16 15 19 19 C 1.34816 * 116.99821 * 354.39871 * 18 17 16 20 20 H 1.08006 * 119.99678 * 5.06135 * 19 18 17 21 21 C 1.38697 * 120.00204 * 185.06510 * 19 18 17 22 22 N 1.31519 * 119.99670 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00130 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46655 * 89.99880 * 23 21 19 25 25 H 1.48500 * 109.46926 * 209.99782 * 23 21 19 26 26 H 1.48495 * 109.47220 * 329.99974 * 23 21 19 27 27 O 1.34013 * 106.67597 * 359.66709 * 7 6 5 28 28 N 1.20896 * 111.85917 * 0.22987 * 27 7 6 29 29 H 1.09002 * 109.47088 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46931 * 299.99368 * 1 2 3 32 32 H 1.07998 * 128.04221 * 0.04399 * 6 5 3 33 33 H 1.09002 * 109.46989 * 329.71389 * 8 7 6 34 34 H 1.08994 * 109.47633 * 209.70783 * 8 7 6 35 35 H 1.07996 * 120.04168 * 0.02562 * 13 12 10 36 36 H 1.08001 * 119.82964 * 180.02562 * 14 13 12 37 37 H 1.07992 * 119.79695 * 179.72912 * 15 14 13 38 38 H 1.08007 * 119.95541 * 179.97438 * 16 15 14 39 39 H 0.97004 * 119.99410 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4020 2.2180 0.0005 5 6 3.5436 1.2774 0.0006 6 6 4.3382 2.4579 0.0053 7 6 5.6095 1.9946 0.0008 8 6 6.8688 2.8224 0.0024 9 8 7.2720 3.0877 1.3719 10 6 8.3879 3.8218 1.5498 11 8 9.0069 4.2295 0.5870 12 6 8.8576 4.1303 2.9124 13 6 8.1487 3.6641 4.0227 14 6 8.5930 3.9565 5.2940 15 6 9.7403 4.7119 5.4781 16 6 10.4509 5.1793 4.3910 17 6 10.0188 4.8949 3.1027 18 8 10.7149 5.3533 2.0343 19 6 11.7521 6.1766 2.2870 20 1 12.0461 6.3774 3.3067 21 6 12.4415 6.7658 1.2376 22 7 12.0837 6.5209 -0.0041 23 14 13.8782 7.9072 1.5878 24 1 15.1350 7.1181 1.6434 25 1 13.9784 8.9223 0.5086 26 1 13.6634 8.5883 2.8897 27 8 5.5312 0.6568 0.0016 28 7 4.3848 0.2729 0.0014 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0041 3.4849 0.0098 33 1 6.6841 3.7659 -0.5112 34 1 7.6618 2.2785 -0.5109 35 1 7.2539 3.0754 3.8847 36 1 8.0444 3.5951 6.1512 37 1 10.0782 4.9396 6.4782 38 1 11.3438 5.7677 4.5429 39 1 12.5657 6.9333 -0.7380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771018972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:37 Heat of formation + Delta-G solvation = -88.532116 kcal Electronic energy + Delta-G solvation = -28659.459325 eV Core-core repulsion = 24116.981470 eV Total energy + Delta-G solvation = -4542.477855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.50063 -40.72468 -40.00743 -38.79975 -36.99279 -36.50719 -35.92760 -34.50145 -33.04301 -32.47888 -30.76317 -29.05333 -28.55081 -27.48642 -25.53274 -25.21199 -23.58636 -23.05853 -21.69842 -20.91257 -20.39464 -18.28709 -18.22458 -18.10861 -17.80674 -17.49166 -16.87030 -16.75804 -16.62160 -16.03611 -15.73430 -14.78003 -14.58209 -14.46849 -14.13952 -14.03448 -13.88629 -13.79541 -13.68949 -13.30858 -12.81705 -12.69815 -12.61901 -12.24469 -11.94656 -11.81727 -11.42580 -11.31309 -11.29690 -11.21313 -10.98787 -10.95392 -10.86397 -10.53776 -10.41289 -10.13414 -9.82302 -9.35759 -8.99330 -8.40859 -7.45854 -6.58014 -4.17506 0.52856 1.06358 1.50106 1.93802 2.23880 2.40277 2.48208 3.05358 3.06518 3.11326 3.28125 3.31526 3.52410 3.83566 4.14535 4.46191 4.50638 4.64690 4.71928 4.75108 4.82271 4.94226 5.05686 5.09625 5.19029 5.29833 5.42935 5.48884 5.51959 5.69359 5.73816 5.95653 6.05262 6.47608 6.55969 6.74705 6.84571 7.00881 7.09636 7.14985 7.21491 7.58117 7.60443 7.80524 8.51487 8.82299 9.49804 10.55517 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.002148 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.988131 B =13034.381539 C =14053.692845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.555 3.445 4 O -0.484 6.484 5 C -0.022 4.022 6 C -0.151 4.151 7 C -0.020 4.020 8 C 0.148 3.852 9 O -0.362 6.362 10 C 0.503 3.497 11 O -0.471 6.471 12 C -0.217 4.217 13 C -0.014 4.014 14 C -0.234 4.234 15 C -0.042 4.042 16 C -0.238 4.238 17 C 0.192 3.808 18 O -0.124 6.124 19 C -0.402 4.402 20 H 0.097 0.903 21 C 0.045 3.955 22 N -0.831 5.831 23 Si 0.943 3.057 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.265 1.265 27 O 0.147 5.853 28 N -0.300 5.300 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.190 0.810 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -9.029 1.937 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.396 3.604 4 O -0.369 6.369 5 C -0.178 4.178 6 C -0.173 4.173 7 C -0.082 4.082 8 C 0.072 3.928 9 O -0.282 6.282 10 C 0.349 3.651 11 O -0.357 6.357 12 C -0.220 4.220 13 C -0.033 4.033 14 C -0.253 4.253 15 C -0.060 4.060 16 C -0.257 4.257 17 C 0.132 3.868 18 O -0.022 6.022 19 C -0.478 4.478 20 H 0.114 0.886 21 C -0.163 4.163 22 N -0.462 5.462 23 Si 0.767 3.233 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.189 1.189 27 O 0.063 5.937 28 N 0.005 4.995 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.208 0.792 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.153 0.847 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.663 -9.889 1.057 18.554 hybrid contribution 0.349 1.366 0.153 1.418 sum -15.314 -8.523 1.210 17.568 Atomic orbital electron populations 1.23414 0.74971 1.04347 1.03028 1.86609 1.24160 1.31444 1.83652 1.19451 0.85800 0.82075 0.73029 1.90887 1.65176 1.35971 1.44860 1.22232 0.93025 0.91093 1.11434 1.22495 0.89976 1.00705 1.04157 1.24043 0.97333 0.82937 1.03889 1.20960 0.90153 0.97850 0.83793 1.86577 1.44630 1.68398 1.28563 1.21110 0.77491 0.75829 0.90707 1.91029 1.54424 1.48651 1.41589 1.17922 1.00163 1.14474 0.89461 1.20964 0.96671 0.94287 0.91361 1.20552 1.00578 1.07886 0.96286 1.20985 0.93580 0.93726 0.97739 1.21117 1.04252 1.08785 0.91528 1.19200 0.88906 0.90843 0.87860 1.84129 1.37749 1.52610 1.27684 1.21541 1.07363 1.23966 0.94902 0.88574 1.25422 0.98942 0.97584 0.94376 1.70108 1.38205 1.39399 0.98454 0.85684 0.79770 0.79119 0.78726 1.19628 1.20047 1.18949 1.84864 1.22153 1.22142 1.64566 1.74361 0.89513 1.22775 1.12873 0.91394 0.87449 0.91345 0.79236 0.87097 0.88218 0.85789 0.86937 0.86892 0.84748 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.34 -3.64 10.57 -40.36 -0.43 -4.06 16 3 C 0.56 6.69 7.99 34.84 0.28 6.97 16 4 O -0.48 -6.46 16.74 -19.19 -0.32 -6.78 16 5 C -0.02 -0.27 7.24 -82.54 -0.60 -0.87 16 6 C -0.15 -1.68 10.92 -39.06 -0.43 -2.11 16 7 C -0.02 -0.23 7.11 -35.35 -0.25 -0.48 16 8 C 0.15 1.90 6.03 36.01 0.22 2.11 16 9 O -0.36 -5.94 9.46 -40.64 -0.38 -6.32 16 10 C 0.50 10.44 7.89 34.46 0.27 10.72 16 11 O -0.47 -11.62 14.96 -26.59 -0.40 -12.01 16 12 C -0.22 -4.56 5.89 -104.82 -0.62 -5.18 16 13 C -0.01 -0.25 9.61 -39.18 -0.38 -0.63 16 14 C -0.23 -3.74 10.02 -39.61 -0.40 -4.13 16 15 C -0.04 -0.70 10.03 -39.53 -0.40 -1.09 16 16 C -0.24 -4.82 9.16 -39.44 -0.36 -5.18 16 17 C 0.19 4.51 6.66 -38.58 -0.26 4.25 16 18 O -0.12 -3.44 7.84 -21.03 -0.16 -3.61 16 19 C -0.40 -10.78 9.49 30.90 0.29 -10.48 16 20 H 0.10 2.32 5.21 -52.48 -0.27 2.05 16 21 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 22 N -0.83 -23.78 13.67 55.48 0.76 -23.02 16 23 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 O 0.15 1.80 11.18 17.25 0.19 2.00 16 28 N -0.30 -3.86 12.12 33.29 0.40 -3.46 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.12 1.84 7.61 -52.49 -0.40 1.44 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -33.34 363.12 -5.03 -38.36 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.48 Total: 2.61 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.65 Total: -3.70 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 1.16 Total: -26.47 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.50 Total: -30.79 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.34 -5.03 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771018972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.169 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds