Wall clock time and date at job start Wed Apr 1 2020 04:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34651 * 116.99907 * 2 1 4 4 O 1.21406 * 120.00029 * 0.02562 * 3 2 1 5 5 C 1.48239 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.42304 * 126.94232 * 180.23195 * 5 3 2 7 7 C 1.35310 * 103.91798 * 180.12774 * 6 5 3 8 8 C 1.50701 * 126.66195 * 179.97438 * 7 6 5 9 9 O 1.45208 * 109.47227 * 89.70603 * 8 7 6 10 10 C 1.34756 * 116.99911 * 180.02562 * 9 8 7 11 11 O 1.21505 * 120.00227 * 0.02562 * 10 9 8 12 12 C 1.47395 * 119.99656 * 180.02562 * 10 9 8 13 13 C 1.39734 * 120.20505 * 359.97438 * 12 10 9 14 14 C 1.37806 * 119.91170 * 180.02562 * 13 12 10 15 15 C 1.38587 * 120.33557 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40896 * 359.97438 * 15 14 13 17 17 C 1.38822 * 120.08290 * 0.02562 * 16 15 14 18 18 O 1.35508 * 120.16966 * 179.97438 * 17 16 15 19 19 C 1.34816 * 116.99821 * 354.39871 * 18 17 16 20 20 H 1.08006 * 119.99678 * 5.06135 * 19 18 17 21 21 C 1.38697 * 120.00204 * 185.06510 * 19 18 17 22 22 N 1.31519 * 119.99670 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00130 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46655 * 89.99880 * 23 21 19 25 25 H 1.48500 * 109.46926 * 209.99782 * 23 21 19 26 26 H 1.48495 * 109.47220 * 329.99974 * 23 21 19 27 27 O 1.34013 * 106.67597 * 359.66709 * 7 6 5 28 28 N 1.20896 * 111.85917 * 0.22987 * 27 7 6 29 29 H 1.09002 * 109.47088 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46931 * 299.99368 * 1 2 3 32 32 H 1.07998 * 128.04221 * 0.04399 * 6 5 3 33 33 H 1.09002 * 109.46989 * 329.71389 * 8 7 6 34 34 H 1.08994 * 109.47633 * 209.70783 * 8 7 6 35 35 H 1.07996 * 120.04168 * 0.02562 * 13 12 10 36 36 H 1.08001 * 119.82964 * 180.02562 * 14 13 12 37 37 H 1.07992 * 119.79695 * 179.72912 * 15 14 13 38 38 H 1.08007 * 119.95541 * 179.97438 * 16 15 14 39 39 H 0.97004 * 119.99410 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4020 2.2180 0.0005 5 6 3.5436 1.2774 0.0006 6 6 4.3382 2.4579 0.0053 7 6 5.6095 1.9946 0.0008 8 6 6.8688 2.8224 0.0024 9 8 7.2720 3.0877 1.3719 10 6 8.3879 3.8218 1.5498 11 8 9.0069 4.2295 0.5870 12 6 8.8576 4.1303 2.9124 13 6 8.1487 3.6641 4.0227 14 6 8.5930 3.9565 5.2940 15 6 9.7403 4.7119 5.4781 16 6 10.4509 5.1793 4.3910 17 6 10.0188 4.8949 3.1027 18 8 10.7149 5.3533 2.0343 19 6 11.7521 6.1766 2.2870 20 1 12.0461 6.3774 3.3067 21 6 12.4415 6.7658 1.2376 22 7 12.0837 6.5209 -0.0041 23 14 13.8782 7.9072 1.5878 24 1 15.1350 7.1181 1.6434 25 1 13.9784 8.9223 0.5086 26 1 13.6634 8.5883 2.8897 27 8 5.5312 0.6568 0.0016 28 7 4.3848 0.2729 0.0014 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0041 3.4849 0.0098 33 1 6.6841 3.7659 -0.5112 34 1 7.6618 2.2785 -0.5109 35 1 7.2539 3.0754 3.8847 36 1 8.0444 3.5951 6.1512 37 1 10.0782 4.9396 6.4782 38 1 11.3438 5.7677 4.5429 39 1 12.5657 6.9333 -0.7380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771018972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:36 Heat of formation + Delta-G solvation = -108.598919 kcal Electronic energy + Delta-G solvation = -28660.329487 eV Core-core repulsion = 24116.981470 eV Total energy + Delta-G solvation = -4543.348017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.47637 -41.60210 -41.57819 -40.40556 -38.11933 -37.85198 -37.47607 -35.47017 -34.34265 -34.11650 -32.26301 -30.61938 -29.19822 -28.64047 -27.37955 -26.07444 -25.02236 -24.07691 -23.28467 -21.94193 -21.77625 -19.89188 -19.50758 -19.23523 -18.88285 -18.67391 -18.25775 -17.74516 -17.53844 -17.44087 -17.18180 -16.34754 -16.12365 -15.72398 -15.62772 -15.32554 -15.13514 -14.84463 -14.66534 -14.53178 -14.40296 -14.10409 -13.62835 -13.53701 -13.25147 -13.03812 -12.92546 -12.70064 -12.53560 -12.34945 -12.22364 -12.11014 -12.01069 -11.90738 -11.77767 -11.63515 -11.19423 -10.86887 -10.82867 -9.90791 -9.09774 -8.45992 -6.16149 -0.44038 -0.03586 0.08907 0.71156 1.12346 1.36606 1.37286 1.46929 1.53017 1.54669 1.73374 2.01837 2.16399 2.60874 2.84349 3.17032 3.19931 3.38774 3.54106 3.78432 3.88092 3.94595 4.11219 4.17729 4.21486 4.26624 4.27036 4.33607 4.53721 4.59547 4.61925 4.64583 4.93503 4.94663 5.07540 5.14062 5.26244 5.48429 5.60967 5.69018 5.95744 6.13464 6.22476 6.64867 6.91321 6.96069 7.73023 8.73679 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.002148 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.988131 B =13034.381539 C =14053.692845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.557 3.443 4 O -0.501 6.501 5 C -0.030 4.030 6 C -0.139 4.139 7 C -0.019 4.019 8 C 0.145 3.855 9 O -0.351 6.351 10 C 0.509 3.491 11 O -0.519 6.519 12 C -0.235 4.235 13 C -0.012 4.012 14 C -0.206 4.206 15 C -0.027 4.027 16 C -0.256 4.256 17 C 0.160 3.840 18 O -0.184 6.184 19 C -0.426 4.426 20 H 0.111 0.889 21 C -0.018 4.018 22 N -0.900 5.900 23 Si 1.020 2.980 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.248 1.248 27 O 0.146 5.854 28 N -0.309 5.309 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.072 0.928 32 H 0.209 0.791 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.131 0.869 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.203 -9.884 5.165 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.400 3.600 4 O -0.388 6.388 5 C -0.186 4.186 6 C -0.161 4.161 7 C -0.081 4.081 8 C 0.070 3.930 9 O -0.269 6.269 10 C 0.356 3.644 11 O -0.409 6.409 12 C -0.238 4.238 13 C -0.030 4.030 14 C -0.225 4.225 15 C -0.045 4.045 16 C -0.275 4.275 17 C 0.104 3.896 18 O -0.086 6.086 19 C -0.501 4.501 20 H 0.128 0.872 21 C -0.218 4.218 22 N -0.535 5.535 23 Si 0.839 3.161 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.171 1.171 27 O 0.061 5.939 28 N -0.005 5.005 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.226 0.774 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.149 0.851 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.540 -10.801 4.357 21.055 hybrid contribution 0.498 1.329 -0.579 1.533 sum -17.042 -9.472 3.777 19.860 Atomic orbital electron populations 1.23783 0.72728 1.06538 1.03479 1.86602 1.26393 1.30611 1.83104 1.19423 0.85656 0.82316 0.72654 1.90875 1.65469 1.36545 1.45899 1.22437 0.93445 0.91300 1.11381 1.22744 0.89398 1.01349 1.02618 1.23741 0.96827 0.82717 1.04822 1.21159 0.90910 0.98858 0.82027 1.86516 1.42572 1.67028 1.30803 1.21208 0.77699 0.75157 0.90337 1.91024 1.56130 1.50610 1.43096 1.18394 1.00069 1.14342 0.90969 1.21375 0.97055 0.93774 0.90781 1.21200 0.99391 1.04761 0.97115 1.21513 0.92747 0.91683 0.98557 1.21295 1.05037 1.09741 0.91445 1.19931 0.89740 0.91205 0.88689 1.84132 1.39541 1.55244 1.29646 1.22048 1.07814 1.24488 0.95768 0.87211 1.26709 1.01967 0.99226 0.93925 1.70278 1.40962 1.42552 0.99727 0.84574 0.75743 0.76710 0.79082 1.18768 1.19885 1.17099 1.84856 1.22069 1.22374 1.64604 1.74359 0.89698 1.23166 1.13256 0.90933 0.84458 0.90945 0.77403 0.85963 0.87830 0.82761 0.82047 0.82418 0.85133 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -6.94 10.57 -55.60 -0.59 -7.53 16 3 C 0.56 12.76 7.99 70.48 0.56 13.32 16 4 O -0.50 -12.77 16.74 20.14 0.34 -12.44 16 5 C -0.03 -0.70 7.24 42.94 0.31 -0.39 16 6 C -0.14 -2.89 10.92 22.61 0.25 -2.64 16 7 C -0.02 -0.41 7.11 25.01 0.18 -0.23 16 8 C 0.14 3.69 6.03 71.24 0.43 4.12 16 9 O -0.35 -11.28 9.46 -56.67 -0.54 -11.81 16 10 C 0.51 21.61 7.89 70.23 0.55 22.16 16 11 O -0.52 -27.15 14.96 26.81 0.40 -26.75 16 12 C -0.24 -9.82 5.89 -19.99 -0.12 -9.93 16 13 C -0.01 -0.37 9.61 22.53 0.22 -0.15 16 14 C -0.21 -5.43 10.02 22.25 0.22 -5.21 16 15 C -0.03 -0.79 10.03 22.30 0.22 -0.56 16 16 C -0.26 -10.16 9.16 22.36 0.20 -9.96 16 17 C 0.16 7.71 6.66 22.92 0.15 7.86 16 18 O -0.18 -10.88 7.84 0.95 0.01 -10.87 16 19 C -0.43 -24.11 9.49 67.93 0.64 -23.47 16 20 H 0.11 5.53 5.21 -2.91 -0.02 5.52 16 21 C -0.02 -1.01 5.49 84.85 0.47 -0.55 16 22 N -0.90 -55.40 13.67 21.62 0.30 -55.11 16 23 Si 1.02 41.71 29.55 68.60 2.03 43.73 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 27 O 0.15 3.43 11.18 71.92 0.80 4.24 16 28 N -0.31 -7.63 12.12 -49.53 -0.60 -8.23 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.21 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 35 H 0.15 3.85 7.61 -2.91 -0.02 3.83 16 36 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.13 5.18 5.64 -2.91 -0.02 5.16 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.78 363.12 8.77 -71.01 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.13 Total: 17.89 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.49 Total: -4.13 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.30 Total: -63.34 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: 0.43 Total: -65.17 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -79.78 8.77 -71.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771018972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.590 kcal (2) G-P(sol) polarization free energy of solvation -79.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds