Wall clock time and date at job start Wed Apr 1 2020 04:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46750 * 2 1 4 4 C 1.46497 * 120.00009 * 277.71381 * 3 2 1 5 5 C 1.50705 * 109.46721 * 276.29740 * 4 3 2 6 6 H 1.07998 * 120.00609 * 5.38861 * 5 4 3 7 7 C 1.37875 * 119.99670 * 185.38174 * 5 4 3 8 8 N 1.31519 * 120.00187 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47376 * 59.99843 * 9 7 5 11 11 H 1.48506 * 109.47647 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47255 * 300.00300 * 9 7 5 13 13 C 1.34774 * 119.99729 * 97.71354 * 3 2 1 14 14 O 1.21556 * 120.00025 * 174.62726 * 13 3 2 15 15 C 1.47849 * 120.00262 * 354.63102 * 13 3 2 16 16 C 1.39604 * 120.14078 * 299.49035 * 15 13 3 17 17 C 1.37932 * 119.84685 * 180.29761 * 16 15 13 18 18 C 1.38380 * 120.15109 * 359.68114 * 17 16 15 19 19 C 1.38336 * 120.29060 * 0.02562 * 18 17 16 20 20 C 1.37986 * 120.14582 * 0.02562 * 19 18 17 21 21 S 1.76195 * 120.07331 * 179.97438 * 20 19 18 22 22 O 1.42100 * 104.27735 * 227.34712 * 21 20 19 23 23 O 1.42102 * 104.28126 * 355.20654 * 21 20 19 24 24 C 1.81399 * 104.44765 * 111.27678 * 21 20 19 25 25 F 1.39898 * 109.47414 * 304.85800 * 24 21 20 26 26 F 1.39907 * 109.46830 * 64.85854 * 24 21 20 27 27 H 1.08998 * 109.47451 * 306.69408 * 1 2 3 28 28 H 1.08999 * 109.47439 * 66.69821 * 1 2 3 29 29 H 1.09002 * 109.47205 * 186.69331 * 1 2 3 30 30 H 1.08997 * 109.47011 * 240.00186 * 2 1 3 31 31 H 1.08991 * 109.47147 * 120.00226 * 2 1 3 32 32 H 1.08999 * 109.47445 * 36.29544 * 4 3 2 33 33 H 1.08999 * 109.46929 * 156.30631 * 4 3 2 34 34 H 0.97002 * 119.99654 * 179.97438 * 8 7 5 35 35 H 1.07994 * 120.07590 * 359.97438 * 16 15 13 36 36 H 1.08008 * 119.92552 * 179.70039 * 17 16 15 37 37 H 1.08000 * 119.85790 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.92968 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.47130 * 184.85603 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1018 2.1287 -1.2572 5 6 3.3952 1.7947 -1.9550 6 1 4.0451 1.0321 -1.5520 7 6 3.7487 2.4626 -3.1082 8 7 2.9575 3.3916 -3.5989 9 14 5.3514 2.0483 -3.9736 10 1 5.3417 0.6188 -4.3757 11 1 5.4975 2.9014 -5.1804 12 1 6.4897 2.2955 -3.0525 13 6 2.3906 1.9644 1.1566 14 8 2.8867 3.0740 1.1458 15 6 2.1955 1.2544 2.4388 16 6 0.9129 0.8841 2.8470 17 6 0.7373 0.2274 4.0472 18 6 1.8296 -0.0703 4.8429 19 6 3.1039 0.2884 4.4413 20 6 3.2934 0.9467 3.2435 21 16 4.9171 1.4033 2.7342 22 8 4.7883 2.7583 2.3260 23 8 5.7431 1.0447 3.8335 24 6 5.2600 0.3382 1.3064 25 9 5.0851 -1.0011 1.6710 26 9 4.3812 0.6567 0.2654 27 1 -0.3634 0.6140 0.8240 28 1 -0.3634 0.4065 -0.9438 29 1 -0.3634 -1.0207 0.1198 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.2628 1.8572 -1.8978 33 1 2.0679 3.1977 -1.0473 34 1 3.2065 3.8617 -4.4101 35 1 0.0596 1.1159 2.2270 36 1 -0.2550 -0.0554 4.3665 37 1 1.6867 -0.5850 5.7815 38 1 3.9522 0.0535 5.0671 39 1 6.2869 0.4936 0.9755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841382700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:43 Heat of formation + Delta-G solvation = -122.302106 kcal Electronic energy + Delta-G solvation = -31119.522197 eV Core-core repulsion = 26599.936401 eV Total energy + Delta-G solvation = -4519.585796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.06008 -47.18081 -40.12171 -38.16612 -37.17401 -36.11969 -35.35949 -32.83666 -31.58100 -31.32146 -30.08166 -27.48211 -27.21372 -24.24947 -23.44612 -22.99327 -22.25629 -19.68241 -19.09993 -18.28971 -18.10542 -17.59385 -17.28626 -16.56443 -16.29140 -16.00365 -15.53199 -15.08997 -14.89758 -14.75909 -14.35893 -14.25163 -14.17417 -13.63553 -13.36066 -13.22816 -13.19152 -12.96622 -12.60421 -12.54964 -12.34137 -12.19330 -12.10592 -12.04468 -11.75935 -11.42478 -11.18232 -10.99747 -10.81128 -10.62302 -10.57665 -10.46388 -10.04800 -9.58876 -9.48338 -9.17015 -8.92477 -8.40040 -7.66034 -6.01014 -4.04088 -0.52575 0.58509 1.01783 2.33196 3.09069 3.16560 3.31066 3.36522 3.37085 3.49335 3.76334 3.78358 3.93838 4.18394 4.45119 4.47715 4.69734 4.71315 4.74736 5.02410 5.17563 5.33553 5.34912 5.41794 5.58999 5.64239 5.70770 5.88937 5.98682 6.03245 6.12991 6.25160 6.48029 6.59803 7.03951 7.44998 7.53533 7.97998 8.26191 8.31813 8.84018 9.04293 9.60082 11.07682 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.005851 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.054630 B = 4784.081321 C = 5834.494690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 N -0.578 5.578 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.501 3.499 14 O -0.472 6.472 15 C -0.003 4.003 16 C -0.119 4.119 17 C -0.063 4.063 18 C -0.135 4.135 19 C -0.018 4.018 20 C -0.626 4.626 21 S 2.452 3.548 22 O -0.837 6.837 23 O -0.909 6.909 24 C -0.224 4.224 25 F -0.173 7.173 26 F -0.118 7.118 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 -10.812 14.924 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.311 5.311 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.284 3.716 14 O -0.346 6.346 15 C -0.008 4.008 16 C -0.137 4.137 17 C -0.081 4.081 18 C -0.154 4.154 19 C -0.038 4.038 20 C -0.715 4.715 21 S 2.622 3.378 22 O -0.834 6.834 23 O -0.907 6.907 24 C -0.360 4.360 25 F -0.155 7.155 26 F -0.099 7.099 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.074 -9.505 14.981 17.863 hybrid contribution 0.247 -1.041 -1.020 1.478 sum -1.827 -10.546 13.961 17.592 Atomic orbital electron populations 1.22399 0.96675 1.01404 1.02680 1.21456 0.93718 0.84170 1.02702 1.48194 1.61615 1.13175 1.08073 1.19355 0.97001 0.93041 0.77903 1.21735 1.05574 1.21236 1.08338 0.90714 1.24915 0.96910 0.94885 0.97268 1.69924 1.37135 1.24202 1.22077 0.86675 0.84189 0.78181 0.79053 1.20310 1.21166 1.20270 1.18483 0.82160 0.87480 0.83524 1.91025 1.39653 1.18126 1.85792 1.20113 0.93535 0.92466 0.94639 1.21669 0.96525 0.98312 0.97235 1.21441 0.99366 0.94259 0.93030 1.21355 0.92325 1.01186 1.00523 1.20923 0.98864 0.91195 0.92770 1.30129 1.19926 1.15889 1.05590 1.07775 0.76173 0.77336 0.76515 1.93900 1.84288 1.24573 1.80664 1.93595 1.66539 1.84417 1.46125 1.33108 1.03820 0.90670 1.08424 1.93032 1.96696 1.34154 1.91621 1.93460 1.68252 1.91463 1.56768 0.92576 0.91727 0.92146 0.89676 0.91899 0.95168 0.93038 0.92765 0.83763 0.84713 0.84697 0.83375 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.88 37.16 0.37 -1.89 16 2 C 0.10 1.68 5.08 -4.04 -0.02 1.66 16 3 N -0.58 -11.89 1.37 -176.17 -0.24 -12.13 16 4 C 0.25 6.20 5.21 -5.19 -0.03 6.17 16 5 C -0.53 -14.43 8.83 -34.44 -0.30 -14.73 16 6 H 0.08 1.97 4.97 -52.49 -0.26 1.71 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.50 10.43 4.18 -12.33 -0.05 10.38 16 14 O -0.47 -11.93 13.40 -19.05 -0.26 -12.19 16 15 C 0.00 -0.05 4.22 -104.96 -0.44 -0.49 16 16 C -0.12 -1.51 8.13 -39.18 -0.32 -1.83 16 17 C -0.06 -0.61 10.03 -39.64 -0.40 -1.00 16 18 C -0.13 -1.28 10.04 -39.49 -0.40 -1.68 16 19 C -0.02 -0.22 9.49 -39.64 -0.38 -0.60 16 20 C -0.63 -9.52 5.55 -39.18 -0.22 -9.74 16 21 S 2.45 39.63 5.01 -107.50 -0.54 39.09 16 22 O -0.84 -17.19 14.37 -67.21 -0.97 -18.16 16 23 O -0.91 -14.09 16.76 -57.54 -0.96 -15.06 16 24 C -0.22 -3.46 5.96 101.05 0.60 -2.86 16 25 F -0.17 -2.49 17.29 2.25 0.04 -2.45 16 26 F -0.12 -2.35 9.44 2.25 0.02 -2.33 16 27 H 0.06 0.67 4.97 -51.93 -0.26 0.42 16 28 H 0.06 0.91 8.06 -51.93 -0.42 0.50 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 31 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 32 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 33 H 0.05 1.48 7.32 -51.93 -0.38 1.10 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 35 H 0.14 1.68 5.18 -52.49 -0.27 1.41 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.15 1.49 7.22 -52.48 -0.38 1.11 16 39 H 0.15 1.76 8.14 -51.92 -0.42 1.34 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -35.63 334.84 -7.79 -43.42 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.97 Total: -1.26 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.68 Total: -14.97 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.50 Total: -37.68 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.19 Total: -45.40 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.06 Total: -4.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 39.63 SS G_CDS: -0.54 Total: 39.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.63 -7.79 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841382700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.884 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds