Wall clock time and date at job start Wed Apr 1 2020 04:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46750 * 2 1 4 4 C 1.46497 * 120.00009 * 277.71381 * 3 2 1 5 5 C 1.50705 * 109.46721 * 276.29740 * 4 3 2 6 6 H 1.07998 * 120.00609 * 5.38861 * 5 4 3 7 7 C 1.37875 * 119.99670 * 185.38174 * 5 4 3 8 8 N 1.31519 * 120.00187 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47376 * 59.99843 * 9 7 5 11 11 H 1.48506 * 109.47647 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47255 * 300.00300 * 9 7 5 13 13 C 1.34774 * 119.99729 * 97.71354 * 3 2 1 14 14 O 1.21556 * 120.00025 * 174.62726 * 13 3 2 15 15 C 1.47849 * 120.00262 * 354.63102 * 13 3 2 16 16 C 1.39604 * 120.14078 * 299.49035 * 15 13 3 17 17 C 1.37932 * 119.84685 * 180.29761 * 16 15 13 18 18 C 1.38380 * 120.15109 * 359.68114 * 17 16 15 19 19 C 1.38336 * 120.29060 * 0.02562 * 18 17 16 20 20 C 1.37986 * 120.14582 * 0.02562 * 19 18 17 21 21 S 1.76195 * 120.07331 * 179.97438 * 20 19 18 22 22 O 1.42100 * 104.27735 * 227.34712 * 21 20 19 23 23 O 1.42102 * 104.28126 * 355.20654 * 21 20 19 24 24 C 1.81399 * 104.44765 * 111.27678 * 21 20 19 25 25 F 1.39898 * 109.47414 * 304.85800 * 24 21 20 26 26 F 1.39907 * 109.46830 * 64.85854 * 24 21 20 27 27 H 1.08998 * 109.47451 * 306.69408 * 1 2 3 28 28 H 1.08999 * 109.47439 * 66.69821 * 1 2 3 29 29 H 1.09002 * 109.47205 * 186.69331 * 1 2 3 30 30 H 1.08997 * 109.47011 * 240.00186 * 2 1 3 31 31 H 1.08991 * 109.47147 * 120.00226 * 2 1 3 32 32 H 1.08999 * 109.47445 * 36.29544 * 4 3 2 33 33 H 1.08999 * 109.46929 * 156.30631 * 4 3 2 34 34 H 0.97002 * 119.99654 * 179.97438 * 8 7 5 35 35 H 1.07994 * 120.07590 * 359.97438 * 16 15 13 36 36 H 1.08008 * 119.92552 * 179.70039 * 17 16 15 37 37 H 1.08000 * 119.85790 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.92968 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.47130 * 184.85603 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1018 2.1287 -1.2572 5 6 3.3952 1.7947 -1.9550 6 1 4.0451 1.0321 -1.5520 7 6 3.7487 2.4626 -3.1082 8 7 2.9575 3.3916 -3.5989 9 14 5.3514 2.0483 -3.9736 10 1 5.3417 0.6188 -4.3757 11 1 5.4975 2.9014 -5.1804 12 1 6.4897 2.2955 -3.0525 13 6 2.3906 1.9644 1.1566 14 8 2.8867 3.0740 1.1458 15 6 2.1955 1.2544 2.4388 16 6 0.9129 0.8841 2.8470 17 6 0.7373 0.2274 4.0472 18 6 1.8296 -0.0703 4.8429 19 6 3.1039 0.2884 4.4413 20 6 3.2934 0.9467 3.2435 21 16 4.9171 1.4033 2.7342 22 8 4.7883 2.7583 2.3260 23 8 5.7431 1.0447 3.8335 24 6 5.2600 0.3382 1.3064 25 9 5.0851 -1.0011 1.6710 26 9 4.3812 0.6567 0.2654 27 1 -0.3634 0.6140 0.8240 28 1 -0.3634 0.4065 -0.9438 29 1 -0.3634 -1.0207 0.1198 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.2628 1.8572 -1.8978 33 1 2.0679 3.1977 -1.0473 34 1 3.2065 3.8617 -4.4101 35 1 0.0596 1.1159 2.2270 36 1 -0.2550 -0.0554 4.3665 37 1 1.6867 -0.5850 5.7815 38 1 3.9522 0.0535 5.0671 39 1 6.2869 0.4936 0.9755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841382700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:42 Heat of formation + Delta-G solvation = -146.902370 kcal Electronic energy + Delta-G solvation = -31120.588945 eV Core-core repulsion = 26599.936401 eV Total energy + Delta-G solvation = -4520.652544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.35842 -48.50780 -41.40912 -39.40216 -38.48132 -37.45839 -36.96576 -34.84420 -32.58104 -32.46733 -31.45805 -29.11240 -28.67435 -25.76463 -24.64547 -24.18442 -23.69874 -20.94945 -20.41266 -19.59963 -19.38084 -18.99917 -18.59703 -18.16401 -17.72818 -17.44225 -16.98694 -16.40146 -16.17351 -15.92116 -15.81203 -15.57159 -15.51272 -15.06993 -14.70762 -14.58082 -14.45066 -14.26783 -13.95950 -13.87986 -13.58346 -13.53678 -13.51051 -13.33084 -13.17269 -12.99870 -12.85521 -12.57858 -12.37942 -12.16313 -11.90477 -11.77071 -11.72599 -11.42840 -10.69146 -10.57232 -10.49370 -10.02723 -9.38621 -8.14957 -6.25758 -1.74875 -0.42567 0.08648 1.15371 1.35766 1.39598 1.46067 1.66329 2.04655 2.19181 2.40935 2.46049 2.59842 2.76588 2.97476 3.15666 3.31734 3.43131 3.73724 3.98188 4.11189 4.23862 4.25353 4.41498 4.45771 4.60638 4.75678 4.92806 4.95055 5.02897 5.12356 5.16603 5.23797 5.33117 5.45169 5.69953 5.76209 5.89367 6.16723 6.68217 6.86616 7.28645 7.45712 8.92974 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.005851 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.054630 B = 4784.081321 C = 5834.494690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.580 5.580 4 C 0.261 3.739 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.953 3.047 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.534 6.534 15 C -0.035 4.035 16 C -0.120 4.120 17 C -0.044 4.044 18 C -0.114 4.114 19 C -0.023 4.023 20 C -0.638 4.638 21 S 2.457 3.543 22 O -0.894 6.894 23 O -0.909 6.909 24 C -0.228 4.228 25 F -0.163 7.163 26 F -0.146 7.146 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.003 0.997 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -14.317 17.640 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.311 5.311 4 C 0.140 3.860 5 C -0.577 4.577 6 H 0.101 0.899 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.777 3.223 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.200 1.200 13 C 0.286 3.714 14 O -0.411 6.411 15 C -0.039 4.039 16 C -0.139 4.139 17 C -0.062 4.062 18 C -0.133 4.133 19 C -0.042 4.042 20 C -0.730 4.730 21 S 2.631 3.369 22 O -0.891 6.891 23 O -0.906 6.906 24 C -0.365 4.365 25 F -0.144 7.144 26 F -0.127 7.127 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.021 0.979 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.201 0.799 38 H 0.184 0.816 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.903 -13.056 17.713 22.196 hybrid contribution 0.429 -0.064 -1.697 1.751 sum -2.474 -13.120 16.016 20.851 Atomic orbital electron populations 1.22346 0.93950 1.03850 1.02219 1.21710 0.95950 0.81593 1.03120 1.48101 1.61808 1.14537 1.06670 1.18786 0.96222 0.91007 0.79956 1.22148 1.06259 1.21026 1.08262 0.89932 1.25813 1.00365 0.94869 0.98270 1.70067 1.39094 1.25497 1.22624 0.85692 0.79911 0.78800 0.77858 1.18477 1.20804 1.19980 1.19144 0.80413 0.86910 0.84937 1.90978 1.42212 1.20955 1.86980 1.19684 0.95811 0.95456 0.92997 1.21878 0.94887 0.98295 0.98872 1.21980 1.01761 0.91546 0.90868 1.21956 0.90742 0.98982 1.01627 1.21328 1.01121 0.90360 0.91421 1.29831 1.18069 1.17986 1.07158 1.07247 0.76891 0.76473 0.76258 1.93854 1.85386 1.28207 1.81627 1.93576 1.67082 1.84257 1.45659 1.33205 1.04958 0.90888 1.07403 1.93043 1.96729 1.33243 1.91423 1.93361 1.69446 1.91851 1.58091 0.91379 0.93595 0.88434 0.90992 0.89672 0.95971 0.97866 0.92844 0.83084 0.79903 0.79928 0.81588 0.79869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 9.88 71.98 0.71 -3.34 16 2 C 0.10 3.16 5.08 86.38 0.44 3.60 16 3 N -0.58 -24.87 1.37 -829.57 -1.13 -26.00 16 4 C 0.26 14.09 5.21 85.64 0.45 14.54 16 5 C -0.54 -30.62 8.83 25.60 0.23 -30.39 16 6 H 0.08 4.48 4.97 -2.91 -0.01 4.47 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 9 Si 0.95 45.11 29.54 68.60 2.03 47.14 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.50 21.78 4.18 86.79 0.36 22.15 16 14 O -0.53 -29.09 13.40 19.41 0.26 -28.83 16 15 C -0.04 -1.13 4.22 -20.09 -0.08 -1.21 16 16 C -0.12 -2.71 8.13 22.53 0.18 -2.53 16 17 C -0.04 -0.59 10.03 22.23 0.22 -0.36 16 18 C -0.11 -1.47 10.04 22.33 0.22 -1.25 16 19 C -0.02 -0.47 9.49 22.23 0.21 -0.26 16 20 C -0.64 -18.67 5.55 22.53 0.13 -18.54 16 21 S 2.46 80.53 5.01 -56.49 -0.28 80.25 16 22 O -0.89 -39.16 14.37 -118.40 -1.70 -40.86 16 23 O -0.91 -27.56 16.76 -127.65 -2.14 -29.70 16 24 C -0.23 -7.01 5.96 113.37 0.68 -6.33 16 25 F -0.16 -4.42 17.29 44.97 0.78 -3.64 16 26 F -0.15 -5.96 9.44 44.97 0.42 -5.54 16 27 H 0.07 1.49 4.97 -2.39 -0.01 1.48 16 28 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 31 H 0.08 2.34 6.40 -2.39 -0.02 2.32 16 32 H 0.02 1.21 8.04 -2.39 -0.02 1.19 16 33 H 0.00 0.20 7.32 -2.39 -0.02 0.18 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.15 3.10 5.18 -2.91 -0.02 3.09 16 36 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.17 2.69 7.22 -2.91 -0.02 2.67 16 39 H 0.18 4.24 8.14 -2.39 -0.02 4.22 16 Total: -1.00 -85.56 334.84 3.83 -81.73 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.11 Total: 5.72 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 4.20 Total: -23.18 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -0.85 Total: -83.08 kcal Atomic # 8 Polarization: -95.81 SS G_CDS: -3.58 Total: -99.39 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 1.20 Total: -9.18 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 80.53 SS G_CDS: -0.28 Total: 80.25 kcal Total: -85.56 3.83 -81.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841382700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.176 kcal (2) G-P(sol) polarization free energy of solvation -85.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds