Wall clock time and date at job start Wed Apr 1 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35953 * 116.99540 * 2 1 4 4 C 1.38638 * 120.05262 * 359.97438 * 3 2 1 5 5 C 1.38383 * 119.94865 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.97844 * 180.02562 * 5 4 3 7 7 C 1.38467 * 120.04354 * 359.97438 * 5 4 3 8 8 S 1.76202 * 119.95154 * 180.02562 * 7 5 4 9 9 O 1.42100 * 106.39884 * 48.56216 * 8 7 5 10 10 O 1.42102 * 106.40612 * 181.48212 * 8 7 5 11 11 N 1.65600 * 107.21621 * 295.02436 * 8 7 5 12 12 C 1.46504 * 120.00109 * 66.23243 * 11 8 7 13 13 C 1.52996 * 109.47132 * 159.12808 * 12 11 8 14 14 C 1.50701 * 115.55130 * 65.70488 * 13 12 11 15 15 H 1.08002 * 119.99979 * 264.70767 * 14 13 12 16 16 C 1.37870 * 119.99775 * 84.71054 * 14 13 12 17 17 N 1.31515 * 119.99976 * 184.42334 * 16 14 13 18 18 Si 1.86802 * 120.00161 * 4.42351 * 16 14 13 19 19 H 1.48502 * 109.46971 * 94.25974 * 18 16 14 20 20 H 1.48501 * 109.47291 * 214.25509 * 18 16 14 21 21 H 1.48502 * 109.47084 * 334.25778 * 18 16 14 22 22 C 1.53000 * 117.49554 * 280.03414 * 13 12 11 23 23 C 1.53000 * 117.49598 * 211.37838 * 13 12 11 24 24 C 1.38238 * 120.10019 * 0.02793 * 7 5 4 25 25 C 1.38326 * 120.05522 * 359.97350 * 24 7 5 26 26 F 1.35102 * 120.02216 * 179.97438 * 25 24 7 27 27 H 1.08997 * 109.47363 * 60.01085 * 1 2 3 28 28 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47645 * 299.99955 * 1 2 3 30 30 H 1.08001 * 120.02693 * 359.95644 * 4 3 2 31 31 H 0.97004 * 119.99843 * 246.22765 * 11 8 7 32 32 H 1.09000 * 109.46384 * 279.12884 * 12 11 8 33 33 H 1.09004 * 109.46957 * 39.12462 * 12 11 8 34 34 H 0.97003 * 119.99789 * 179.97438 * 17 16 14 35 35 H 1.08997 * 117.50333 * 0.02562 * 22 13 12 36 36 H 1.09011 * 117.49510 * 145.02374 * 22 13 12 37 37 H 1.09003 * 117.49706 * 214.97634 * 23 13 12 38 38 H 1.08993 * 117.50217 * 359.97348 * 23 13 12 39 39 H 1.08005 * 119.97715 * 179.69679 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2920 2.3748 -0.0005 5 6 1.9224 3.6067 0.0000 6 9 1.1881 4.7407 0.0000 7 6 3.3052 3.6778 0.0016 8 16 4.1053 5.2476 0.0030 9 8 3.4825 6.0145 1.0244 10 8 5.5017 4.9864 -0.0308 11 7 3.7334 5.9886 -1.4306 12 6 2.3522 6.3879 -1.7120 13 6 2.3446 7.4699 -2.7938 14 6 2.8249 7.0328 -4.1537 15 1 3.8539 7.1931 -4.4401 16 6 1.9509 6.4284 -5.0320 17 7 2.3890 5.9686 -6.1837 18 14 0.1444 6.2625 -4.5864 19 1 -0.6121 7.4084 -5.1519 20 1 -0.3886 4.9938 -5.1445 21 1 -0.0021 6.2535 -3.1087 22 6 2.6577 8.9036 -2.3611 23 6 1.2271 8.5136 -2.7410 24 6 4.0590 2.5190 0.0021 25 6 3.4331 1.2854 0.0015 26 9 4.1705 0.1534 0.0015 27 1 -0.3634 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2134 2.3196 -0.0017 31 1 4.4301 6.1582 -2.0839 32 1 1.7876 5.5227 -2.0594 33 1 1.8948 6.7793 -0.8033 34 1 1.7741 5.5430 -6.8015 35 1 2.8695 9.0760 -1.3059 36 1 3.2108 9.5309 -3.0603 37 1 0.8396 8.8844 -3.6900 38 1 0.4972 8.4292 -1.9360 39 1 5.1375 2.5768 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915177919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:57 Heat of formation + Delta-G solvation = -136.764975 kcal Electronic energy + Delta-G solvation = -29388.486483 eV Core-core repulsion = 24868.273530 eV Total energy + Delta-G solvation = -4520.212953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.47847 -49.07671 -40.45149 -37.78990 -37.49759 -36.97009 -35.71168 -33.54314 -32.17200 -31.24977 -30.57565 -27.90048 -26.39775 -24.97568 -23.62813 -23.33121 -21.69334 -19.61341 -19.39696 -19.03161 -18.15826 -17.99838 -17.16743 -16.93652 -16.73414 -16.50923 -16.02378 -15.63716 -15.41982 -15.35054 -15.08940 -14.96294 -14.79222 -14.32881 -14.06287 -13.57275 -13.09021 -12.84784 -12.73373 -12.62694 -12.54979 -12.49975 -12.10759 -11.98029 -11.87122 -11.77419 -11.65372 -11.16956 -11.09823 -10.91238 -10.52155 -10.18280 -9.60989 -9.50517 -9.34726 -8.96309 -8.81943 -8.59922 -8.54312 -6.20018 -4.23855 0.21456 0.53877 0.57689 2.49797 2.69195 3.19119 3.23249 3.30848 3.35810 3.57675 3.67146 3.83244 4.02986 4.33614 4.41512 4.63906 4.69739 4.72175 4.88142 4.92364 4.97338 5.07638 5.09578 5.23473 5.37003 5.54462 5.58172 5.92856 5.98218 6.04304 6.05539 6.18274 6.45498 6.60398 6.62373 6.69648 7.04694 7.07613 7.54569 7.64574 8.39646 8.82690 9.43116 10.91165 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.004781 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.484595 B = 5854.737560 C = 6958.269526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.297 6.297 3 C 0.175 3.825 4 C -0.241 4.241 5 C 0.233 3.767 6 F -0.107 7.107 7 C -0.724 4.724 8 S 2.697 3.303 9 O -0.950 6.950 10 O -0.959 6.959 11 N -1.088 6.088 12 C 0.151 3.849 13 C -0.009 4.009 14 C -0.488 4.488 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.893 5.893 18 Si 0.872 3.128 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.253 1.253 22 C -0.176 4.176 23 C -0.195 4.195 24 C 0.012 3.988 25 C 0.041 3.959 26 F -0.123 7.123 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.429 0.571 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -9.623 13.294 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.209 6.209 3 C 0.127 3.873 4 C -0.261 4.261 5 C 0.212 3.788 6 F -0.085 7.085 7 C -0.808 4.808 8 S 2.781 3.219 9 O -0.940 6.940 10 O -0.949 6.949 11 N -0.851 5.851 12 C 0.025 3.975 13 C -0.011 4.011 14 C -0.526 4.526 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.530 5.530 18 Si 0.700 3.300 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.214 4.214 23 C -0.233 4.233 24 C -0.008 4.008 25 C 0.021 3.979 26 F -0.101 7.101 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.178 0.822 31 H 0.266 0.734 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.532 -9.684 13.919 17.320 hybrid contribution -1.641 -0.621 -0.649 1.871 sum -5.174 -10.305 13.269 17.579 Atomic orbital electron populations 1.23319 0.76839 1.05102 1.02380 1.86207 1.22737 1.24894 1.87030 1.18888 0.90755 0.85266 0.92390 1.21097 1.01899 0.90126 1.13007 1.16678 0.87322 0.82449 0.92347 1.91675 1.76758 1.47828 1.92241 1.31115 1.02710 1.24078 1.22851 1.01945 0.73158 0.73005 0.73746 1.93606 1.77838 1.67030 1.55509 1.93571 1.29077 1.85472 1.86761 1.55118 1.18326 1.73699 1.38005 1.21272 0.79724 0.98514 0.98025 1.19521 0.99380 0.86543 0.95706 1.20226 0.98367 1.39201 0.94757 0.90181 1.24978 0.98653 0.94125 0.94623 1.69900 1.35469 1.38523 1.09100 0.86949 0.85817 0.77216 0.80062 1.20386 1.22162 1.17716 1.22855 0.98225 1.00604 0.99672 1.23002 0.91612 1.07043 1.01630 1.20644 1.01702 0.88023 0.90432 1.16856 0.85842 0.83349 1.11903 1.91544 1.76039 1.48117 1.94439 0.91530 0.87181 0.91724 0.82222 0.73361 0.92495 0.91736 0.92529 0.90545 0.89390 0.89308 0.90660 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.30 -3.19 10.36 -19.59 -0.20 -3.39 16 3 C 0.18 2.13 6.69 -39.19 -0.26 1.87 16 4 C -0.24 -2.85 9.01 -39.38 -0.35 -3.21 16 5 C 0.23 3.34 6.95 -39.44 -0.27 3.06 16 6 F -0.11 -1.64 12.89 2.25 0.03 -1.61 16 7 C -0.72 -10.60 5.91 -39.50 -0.23 -10.83 16 8 S 2.70 43.78 5.48 -107.50 -0.59 43.19 16 9 O -0.95 -17.25 16.78 -57.17 -0.96 -18.21 16 10 O -0.96 -16.41 16.96 -57.17 -0.97 -17.38 16 11 N -1.09 -19.15 5.94 -10.61 -0.06 -19.21 16 12 C 0.15 2.92 4.01 -4.04 -0.02 2.91 16 13 C -0.01 -0.19 0.89 -155.66 -0.14 -0.33 16 14 C -0.49 -12.47 9.05 -34.44 -0.31 -12.78 16 15 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 18 Si 0.87 20.24 24.94 -169.99 -4.24 16.00 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.25 -5.43 5.70 56.52 0.32 -5.11 16 22 C -0.18 -3.40 9.96 -26.70 -0.27 -3.66 16 23 C -0.19 -3.89 7.34 -26.70 -0.20 -4.09 16 24 C 0.01 0.15 9.52 -39.55 -0.38 -0.22 16 25 C 0.04 0.54 7.31 -39.30 -0.29 0.25 16 26 F -0.12 -1.63 17.11 2.25 0.04 -1.59 16 27 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.16 1.40 6.30 -52.49 -0.33 1.07 16 31 H 0.43 7.46 8.39 -34.47 -0.29 7.17 16 32 H 0.06 1.12 6.09 -51.93 -0.32 0.80 16 33 H 0.06 1.18 6.79 -51.93 -0.35 0.82 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.84 7.16 -51.93 -0.37 1.47 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.17 1.98 7.33 -52.48 -0.38 1.60 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -31.81 342.57 -7.01 -38.82 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.17 Total: 7.07 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -1.82 Total: -23.90 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.71 Total: -44.14 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.13 Total: -38.99 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.07 Total: -3.20 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.24 Total: 16.00 kcal Atomic # 16 Polarization: 43.78 SS G_CDS: -0.59 Total: 43.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.81 -7.01 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915177919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.946 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds