Wall clock time and date at job start Wed Apr 1 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00356 * 2 1 4 4 O 1.20827 * 119.99956 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00298 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46832 * 60.00227 * 5 3 2 7 7 N 1.46496 * 109.47133 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99614 * 274.99546 * 7 5 3 9 9 O 1.21691 * 120.00328 * 0.02562 * 8 7 5 10 10 C 1.46376 * 120.00069 * 179.97438 * 8 7 5 11 11 H 1.08005 * 119.99800 * 0.02562 * 10 8 7 12 12 C 1.40047 * 120.00289 * 179.72718 * 10 8 7 13 13 N 1.30676 * 119.99832 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00302 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46907 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47048 * 119.99887 * 14 12 10 17 17 H 1.48493 * 109.47209 * 240.00134 * 14 12 10 18 18 C 1.50703 * 109.46991 * 300.00579 * 5 3 2 19 19 C 1.38170 * 120.02366 * 264.71795 * 18 5 3 20 20 C 1.38246 * 120.05250 * 179.76805 * 19 18 5 21 21 C 1.38291 * 120.11157 * 0.51201 * 20 19 18 22 22 C 1.38120 * 120.05273 * 359.74394 * 21 20 19 23 23 C 1.38711 * 120.03068 * 84.99835 * 18 5 3 24 24 O 1.35896 * 120.05194 * 359.97438 * 23 18 5 25 25 C 1.42908 * 116.99436 * 179.97438 * 24 23 18 26 26 F 1.39895 * 109.47080 * 60.00433 * 25 24 23 27 27 F 1.39901 * 109.46814 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47362 * 300.00096 * 25 24 23 29 29 H 1.09004 * 109.46977 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47129 * 300.00016 * 1 2 3 32 32 H 0.96996 * 120.00499 * 95.00124 * 7 5 3 33 33 H 0.97000 * 119.99487 * 179.97438 * 13 12 10 34 34 H 1.07993 * 119.97487 * 0.02980 * 19 18 5 35 35 H 1.07996 * 119.94331 * 180.25502 * 20 19 18 36 36 H 1.07999 * 119.96771 * 179.76643 * 21 20 19 37 37 H 1.08005 * 120.02114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 7 3.9817 2.6796 0.0011 8 6 4.0758 3.3549 -1.1615 9 8 3.8152 2.7978 -2.2116 10 6 4.4902 4.7587 -1.1611 11 1 4.7211 5.2533 -0.2291 12 6 4.5935 5.4588 -2.3696 13 7 4.3193 4.8588 -3.4977 14 14 5.1231 7.2501 -2.3692 15 1 5.3741 7.6917 -0.9736 16 1 6.3673 7.3986 -3.1662 17 1 4.0497 8.0838 -2.9672 18 6 4.1047 0.5917 1.2314 19 6 4.4001 1.3324 2.3597 20 6 4.8895 0.7058 3.4907 21 6 5.0944 -0.6618 3.4923 22 6 4.8056 -1.4059 2.3651 23 6 4.3094 -0.7802 1.2305 24 8 4.0244 -1.5101 0.1201 25 6 4.2606 -2.9177 0.1909 26 9 3.4825 -3.4702 1.2139 27 9 3.9167 -3.5101 -1.0289 28 9 5.6141 -3.1508 0.4568 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.1892 3.1238 0.8380 33 1 4.3904 5.3439 -4.3347 34 1 4.2447 2.4011 2.3596 35 1 5.1159 1.2859 4.3730 36 1 5.4804 -1.1484 4.3759 37 1 4.9655 -2.4741 2.3671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928327440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:39 Heat of formation + Delta-G solvation = -275.846836 kcal Electronic energy + Delta-G solvation = -31677.100825 eV Core-core repulsion = 26584.643654 eV Total energy + Delta-G solvation = -5092.457171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.52096 -48.21627 -48.12612 -40.79745 -39.72924 -37.98286 -37.24360 -35.83090 -34.10865 -32.46319 -30.84353 -30.53308 -28.25047 -26.88486 -26.08779 -25.41873 -22.88086 -22.44290 -20.95891 -19.86944 -19.42945 -19.23793 -18.99666 -17.77206 -17.33199 -16.56588 -16.31634 -16.12410 -15.86656 -15.39381 -15.26953 -15.13084 -14.85436 -14.57038 -14.55841 -14.50637 -14.30406 -14.22344 -13.98076 -13.87679 -13.40129 -13.23163 -13.12049 -12.58244 -12.31842 -12.24469 -12.07861 -11.73993 -11.42465 -11.27182 -11.05413 -11.03104 -10.52012 -10.39426 -10.22284 -10.17987 -9.07887 -8.89811 -8.61999 -7.88632 -7.72157 -6.23468 -4.68908 1.03758 1.08126 1.44004 2.71898 2.74637 3.03597 3.13653 3.20873 3.25265 3.47932 3.70145 3.92469 4.07024 4.36689 4.51960 4.55789 4.67222 4.79356 4.90154 5.18739 5.27037 5.32379 5.36568 5.42834 5.58100 5.71444 5.79700 5.86337 6.01565 6.11595 6.28480 6.33378 6.74628 6.79817 7.39924 7.65900 7.85883 8.22620 8.31641 8.97959 9.34181 10.51522 10.70139 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003604 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.562865 B = 7766.744505 C = 8066.196759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.451 3.549 4 O -0.484 6.484 5 C 0.213 3.787 6 H 0.128 0.872 7 N -0.739 5.739 8 C 0.558 3.442 9 O -0.573 6.573 10 C -0.537 4.537 11 H 0.071 0.929 12 C 0.087 3.913 13 N -0.764 5.764 14 Si 0.911 3.089 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.089 4.089 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.079 4.079 22 C -0.192 4.192 23 C 0.128 3.872 24 O -0.294 6.294 25 C 0.603 3.397 26 F -0.167 7.167 27 F -0.130 7.130 28 F -0.168 7.168 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.386 0.614 33 H 0.269 0.731 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -14.726 13.954 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.290 3.710 4 O -0.369 6.369 5 C 0.103 3.897 6 H 0.146 0.854 7 N -0.396 5.396 8 C 0.364 3.636 9 O -0.455 6.455 10 C -0.573 4.573 11 H 0.089 0.911 12 C -0.133 4.133 13 N -0.393 5.393 14 Si 0.735 3.265 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.090 4.090 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.097 4.097 22 C -0.210 4.210 23 C 0.085 3.915 24 O -0.213 6.213 25 C 0.512 3.488 26 F -0.149 7.149 27 F -0.112 7.112 28 F -0.150 7.150 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.265 -14.770 12.761 19.521 hybrid contribution 0.066 0.727 0.323 0.798 sum -0.199 -14.043 13.084 19.195 Atomic orbital electron populations 1.23151 0.77600 1.02864 1.02247 1.86553 1.22432 1.34041 1.84562 1.24661 0.92610 0.81334 0.72435 1.90654 1.66313 1.36289 1.43630 1.18645 0.85836 0.87956 0.97258 0.85436 1.46282 1.74063 1.08023 1.11267 1.18321 0.77271 0.87231 0.80817 1.90618 1.54405 1.69823 1.30679 1.20819 1.48574 0.94052 0.93898 0.91109 1.25716 0.93110 0.99547 0.94953 1.70029 1.34622 1.36432 0.98188 0.86266 0.78598 0.82470 0.79138 1.18680 1.20117 1.20122 1.19087 1.03699 0.89626 0.96587 1.20970 0.96309 1.00499 0.91088 1.21170 1.00823 0.94677 0.98522 1.20952 0.97581 0.93917 0.97232 1.21454 1.05178 1.00861 0.93554 1.18355 0.98467 0.90114 0.84568 1.86551 1.81653 1.15546 1.37579 1.19375 0.74536 0.80196 0.74648 1.93282 1.75427 1.86131 1.60059 1.93314 1.92194 1.82027 1.43625 1.93292 1.33623 1.94456 1.93599 0.92077 0.88724 0.92455 0.77866 0.92027 0.84064 0.84880 0.84966 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.36 -6.43 10.17 -39.44 -0.40 -6.83 16 3 C 0.45 9.45 7.28 36.00 0.26 9.71 16 4 O -0.48 -11.65 16.07 -18.75 -0.30 -11.95 16 5 C 0.21 4.31 2.42 -70.24 -0.17 4.14 16 6 H 0.13 2.85 7.13 -51.93 -0.37 2.48 16 7 N -0.74 -16.63 4.52 -57.48 -0.26 -16.89 16 8 C 0.56 15.91 7.58 -12.99 -0.10 15.81 16 9 O -0.57 -18.60 14.68 5.20 0.08 -18.52 16 10 C -0.54 -15.11 9.54 -35.63 -0.34 -15.45 16 11 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 12 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 13 N -0.76 -22.97 11.83 55.55 0.66 -22.32 16 14 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 16 15 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 C -0.09 -1.40 4.99 -104.47 -0.52 -1.92 16 19 C -0.07 -0.92 9.24 -39.60 -0.37 -1.29 16 20 C -0.13 -1.37 10.04 -39.56 -0.40 -1.76 16 21 C -0.08 -0.77 10.04 -39.60 -0.40 -1.16 16 22 C -0.19 -2.22 8.26 -39.44 -0.33 -2.54 16 23 C 0.13 1.85 6.40 -39.22 -0.25 1.59 16 24 O -0.29 -4.39 9.25 -19.41 -0.18 -4.57 16 25 C 0.60 7.35 3.42 101.05 0.35 7.69 16 26 F -0.17 -1.85 15.56 2.25 0.04 -1.81 16 27 F -0.13 -1.59 17.53 2.25 0.04 -1.55 16 28 F -0.17 -1.91 15.56 2.25 0.04 -1.87 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.39 7.45 6.18 -40.82 -0.25 7.20 16 33 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 34 H 0.14 1.75 6.06 -52.49 -0.32 1.44 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.35 5.10 -52.48 -0.27 1.08 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -36.39 342.46 -4.32 -40.70 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -2.87 Total: 6.65 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: -1.29 Total: 18.72 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.40 Total: -39.21 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.81 Total: -41.86 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.39 -4.32 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928327440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.143 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds