Wall clock time and date at job start Wed Apr 1 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00356 * 2 1 4 4 O 1.20827 * 119.99956 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00298 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46832 * 60.00227 * 5 3 2 7 7 N 1.46496 * 109.47133 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99614 * 274.99546 * 7 5 3 9 9 O 1.21691 * 120.00328 * 0.02562 * 8 7 5 10 10 C 1.46376 * 120.00069 * 179.97438 * 8 7 5 11 11 H 1.08005 * 119.99800 * 0.02562 * 10 8 7 12 12 C 1.40047 * 120.00289 * 179.72718 * 10 8 7 13 13 N 1.30676 * 119.99832 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00302 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46907 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47048 * 119.99887 * 14 12 10 17 17 H 1.48493 * 109.47209 * 240.00134 * 14 12 10 18 18 C 1.50703 * 109.46991 * 300.00579 * 5 3 2 19 19 C 1.38170 * 120.02366 * 264.71795 * 18 5 3 20 20 C 1.38246 * 120.05250 * 179.76805 * 19 18 5 21 21 C 1.38291 * 120.11157 * 0.51201 * 20 19 18 22 22 C 1.38120 * 120.05273 * 359.74394 * 21 20 19 23 23 C 1.38711 * 120.03068 * 84.99835 * 18 5 3 24 24 O 1.35896 * 120.05194 * 359.97438 * 23 18 5 25 25 C 1.42908 * 116.99436 * 179.97438 * 24 23 18 26 26 F 1.39895 * 109.47080 * 60.00433 * 25 24 23 27 27 F 1.39901 * 109.46814 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47362 * 300.00096 * 25 24 23 29 29 H 1.09004 * 109.46977 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47129 * 300.00016 * 1 2 3 32 32 H 0.96996 * 120.00499 * 95.00124 * 7 5 3 33 33 H 0.97000 * 119.99487 * 179.97438 * 13 12 10 34 34 H 1.07993 * 119.97487 * 0.02980 * 19 18 5 35 35 H 1.07996 * 119.94331 * 180.25502 * 20 19 18 36 36 H 1.07999 * 119.96771 * 179.76643 * 21 20 19 37 37 H 1.08005 * 120.02114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 7 3.9817 2.6796 0.0011 8 6 4.0758 3.3549 -1.1615 9 8 3.8152 2.7978 -2.2116 10 6 4.4902 4.7587 -1.1611 11 1 4.7211 5.2533 -0.2291 12 6 4.5935 5.4588 -2.3696 13 7 4.3193 4.8588 -3.4977 14 14 5.1231 7.2501 -2.3692 15 1 5.3741 7.6917 -0.9736 16 1 6.3673 7.3986 -3.1662 17 1 4.0497 8.0838 -2.9672 18 6 4.1047 0.5917 1.2314 19 6 4.4001 1.3324 2.3597 20 6 4.8895 0.7058 3.4907 21 6 5.0944 -0.6618 3.4923 22 6 4.8056 -1.4059 2.3651 23 6 4.3094 -0.7802 1.2305 24 8 4.0244 -1.5101 0.1201 25 6 4.2606 -2.9177 0.1909 26 9 3.4825 -3.4702 1.2139 27 9 3.9167 -3.5101 -1.0289 28 9 5.6141 -3.1508 0.4568 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.1892 3.1238 0.8380 33 1 4.3904 5.3439 -4.3347 34 1 4.2447 2.4011 2.3596 35 1 5.1159 1.2859 4.3730 36 1 5.4804 -1.1484 4.3759 37 1 4.9655 -2.4741 2.3671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928327440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:38 Heat of formation + Delta-G solvation = -301.799965 kcal Electronic energy + Delta-G solvation = -31678.226238 eV Core-core repulsion = 26584.643654 eV Total energy + Delta-G solvation = -5093.582584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.47283 -49.18411 -49.05314 -42.09588 -41.08758 -39.54202 -38.67839 -37.50446 -35.79002 -34.58913 -32.36925 -31.48715 -29.62992 -28.61490 -27.11446 -27.02316 -23.92674 -23.59237 -22.62419 -21.34596 -20.78870 -20.19686 -20.04473 -19.47142 -18.85775 -17.94079 -17.91888 -17.39203 -17.31686 -17.13642 -16.32729 -16.22364 -15.96815 -15.79425 -15.62340 -15.53939 -15.47399 -15.39387 -15.18479 -15.00800 -14.93460 -14.57544 -14.34658 -14.18811 -14.11493 -13.58102 -13.25478 -13.14212 -12.98393 -12.80488 -12.67752 -12.46540 -12.21634 -11.96312 -11.85491 -11.82251 -10.97336 -10.12415 -9.97889 -9.84498 -9.58375 -8.33435 -6.90445 0.04867 0.15278 0.46123 1.08646 1.39409 1.40229 1.57648 1.61608 1.75318 2.22973 2.45870 2.51817 2.73046 2.86850 2.98967 3.27142 3.57142 3.64569 3.73718 3.92337 4.04522 4.20042 4.23419 4.24896 4.35248 4.41017 4.58204 4.74279 5.00847 5.22829 5.23753 5.29575 5.36035 5.39201 5.77793 5.85751 5.89036 6.17068 6.68591 6.82610 7.35835 8.38629 8.62235 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003604 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.562865 B = 7766.744505 C = 8066.196759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.453 3.547 4 O -0.526 6.526 5 C 0.215 3.785 6 H 0.096 0.904 7 N -0.727 5.727 8 C 0.543 3.457 9 O -0.626 6.626 10 C -0.565 4.565 11 H 0.093 0.907 12 C 0.027 3.973 13 N -0.820 5.820 14 Si 1.002 2.998 15 H -0.243 1.243 16 H -0.266 1.266 17 H -0.272 1.272 18 C -0.117 4.117 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.061 4.061 22 C -0.192 4.192 23 C 0.112 3.888 24 O -0.320 6.320 25 C 0.608 3.392 26 F -0.157 7.157 27 F -0.134 7.134 28 F -0.162 7.162 29 H 0.048 0.952 30 H 0.138 0.862 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.275 0.725 34 H 0.141 0.859 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -14.785 17.280 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.294 3.706 4 O -0.414 6.414 5 C 0.106 3.894 6 H 0.113 0.887 7 N -0.384 5.384 8 C 0.349 3.651 9 O -0.513 6.513 10 C -0.601 4.601 11 H 0.112 0.888 12 C -0.188 4.188 13 N -0.450 5.450 14 Si 0.821 3.179 15 H -0.165 1.165 16 H -0.190 1.190 17 H -0.197 1.197 18 C -0.118 4.118 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.079 4.079 22 C -0.210 4.210 23 C 0.070 3.930 24 O -0.240 6.240 25 C 0.518 3.482 26 F -0.139 7.139 27 F -0.115 7.115 28 F -0.144 7.144 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.189 0.811 36 H 0.194 0.806 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.773 -14.882 16.161 21.983 hybrid contribution -0.303 0.570 -0.615 0.892 sum 0.471 -14.312 15.546 21.136 Atomic orbital electron populations 1.23539 0.75252 1.05683 1.02121 1.86533 1.24680 1.32209 1.83725 1.24766 0.92979 0.81540 0.71285 1.90621 1.67247 1.37612 1.45898 1.18544 0.85740 0.86423 0.98685 0.88686 1.45799 1.73144 1.09120 1.10373 1.18707 0.76909 0.88051 0.81474 1.90565 1.56678 1.71074 1.32997 1.21408 1.48878 0.94426 0.95394 0.88850 1.27040 0.92278 1.05506 0.93989 1.70203 1.36080 1.39319 0.99379 0.84911 0.78215 0.74553 0.80238 1.16523 1.19048 1.19669 1.18852 1.06800 0.90488 0.95652 1.21112 0.96816 1.00537 0.91404 1.21575 0.98710 0.95276 0.98288 1.21501 0.95075 0.93643 0.97665 1.21732 1.04448 1.01819 0.93034 1.18534 0.99451 0.89666 0.85393 1.86510 1.82069 1.16870 1.38586 1.19234 0.74814 0.79400 0.74755 1.93295 1.75238 1.85851 1.59558 1.93306 1.92256 1.81947 1.43976 1.93298 1.33182 1.94332 1.93540 0.93338 0.84384 0.91535 0.76071 0.91481 0.84145 0.81132 0.80638 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.96 16 2 O -0.36 -13.09 10.17 -51.18 -0.52 -13.61 16 3 C 0.45 19.97 7.28 71.24 0.52 20.49 16 4 O -0.53 -26.56 16.07 21.96 0.35 -26.20 16 5 C 0.22 9.23 2.42 43.50 0.11 9.34 16 6 H 0.10 4.66 7.13 -2.39 -0.02 4.64 16 7 N -0.73 -34.32 4.52 -454.00 -2.05 -36.38 16 8 C 0.54 32.52 7.58 86.36 0.65 33.17 16 9 O -0.63 -43.34 14.68 -4.32 -0.06 -43.40 16 10 C -0.56 -32.54 9.54 24.83 0.24 -32.31 16 11 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 12 C 0.03 1.53 5.50 85.30 0.47 2.00 16 13 N -0.82 -51.28 11.83 21.84 0.26 -51.03 16 14 Si 1.00 41.36 29.56 68.60 2.03 43.38 16 15 H -0.24 -9.10 7.11 99.48 0.71 -8.40 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 C -0.12 -3.73 4.99 -19.77 -0.10 -3.83 16 19 C -0.08 -2.01 9.24 22.26 0.21 -1.80 16 20 C -0.12 -2.00 10.04 22.28 0.22 -1.77 16 21 C -0.06 -0.91 10.04 22.25 0.22 -0.69 16 22 C -0.19 -3.92 8.26 22.36 0.18 -3.73 16 23 C 0.11 3.19 6.40 22.51 0.14 3.33 16 24 O -0.32 -9.76 9.25 -92.38 -0.85 -10.61 16 25 C 0.61 14.52 3.42 113.37 0.39 14.91 16 26 F -0.16 -3.25 15.56 44.97 0.70 -2.55 16 27 F -0.13 -3.28 17.53 44.97 0.79 -2.49 16 28 F -0.16 -3.51 15.56 44.97 0.70 -2.81 16 29 H 0.05 1.48 8.13 -2.38 -0.02 1.46 16 30 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.40 15.98 6.18 -92.71 -0.57 15.41 16 33 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 34 H 0.14 3.39 6.06 -2.91 -0.02 3.37 16 35 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.15 2.54 5.10 -2.91 -0.01 2.52 16 Total: -1.00 -85.47 342.46 6.39 -79.08 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.60 Total: 25.54 kcal Atomic # 6 Polarization: 36.63 SS G_CDS: 4.45 Total: 41.08 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -1.79 Total: -87.40 kcal Atomic # 8 Polarization: -92.74 SS G_CDS: -1.09 Total: -93.83 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 2.19 Total: -7.85 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -85.47 6.39 -79.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928327440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.723 kcal (2) G-P(sol) polarization free energy of solvation -85.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -301.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds