Wall clock time and date at job start Wed Apr 1 2020 04:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34873 * 116.99462 * 2 1 4 4 O 1.21578 * 120.00493 * 359.97438 * 3 2 1 5 5 C 1.46836 * 119.99710 * 180.02562 * 3 2 1 6 6 C 1.37802 * 125.77818 * 180.02562 * 5 3 2 7 7 C 1.39767 * 106.88967 * 179.79223 * 6 5 3 8 8 C 1.38106 * 106.84933 * 0.35203 * 7 6 5 9 9 C 1.46347 * 125.81686 * 179.90185 * 8 7 6 10 10 C 1.35233 * 120.00063 * 179.71495 * 9 8 7 11 11 C 1.46401 * 120.00182 * 180.02562 * 10 9 8 12 12 O 1.21710 * 119.99910 * 359.72742 * 11 10 9 13 13 N 1.34773 * 120.00437 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00508 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46446 * 35.00221 * 14 13 11 16 16 C 1.50696 * 109.47152 * 154.99766 * 14 13 11 17 17 H 1.08003 * 119.99778 * 116.81036 * 16 14 13 18 18 C 1.37878 * 120.00405 * 296.80891 * 16 14 13 19 19 N 1.31512 * 120.00288 * 174.10516 * 18 16 14 20 20 Si 1.86801 * 119.99702 * 354.10306 * 18 16 14 21 21 H 1.48491 * 109.47200 * 85.17174 * 20 18 16 22 22 H 1.48504 * 109.47137 * 205.16960 * 20 18 16 23 23 H 1.48499 * 109.47382 * 325.16437 * 20 18 16 24 24 C 1.52994 * 109.47175 * 275.00125 * 14 13 11 25 25 F 1.39905 * 109.47332 * 65.24549 * 24 14 13 26 26 F 1.39903 * 109.47134 * 185.24346 * 24 14 13 27 27 F 1.39895 * 109.47276 * 305.24576 * 24 14 13 28 28 O 1.34557 * 108.36604 * 359.64355 * 8 7 6 29 29 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 300.00093 * 1 2 3 31 31 H 1.08998 * 109.47421 * 60.00312 * 1 2 3 32 32 H 1.07999 * 126.55722 * 0.02562 * 6 5 3 33 33 H 1.08004 * 126.58240 * 180.24139 * 7 6 5 34 34 H 1.08005 * 120.00366 * 359.71729 * 9 8 7 35 35 H 1.07994 * 120.00044 * 0.02562 * 10 9 8 36 36 H 0.96999 * 119.99731 * 0.02562 * 13 11 10 37 37 H 0.96998 * 120.00472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2018 0.0000 4 8 1.4020 2.2214 -0.0005 5 6 3.5306 1.2787 -0.0006 6 6 4.2765 2.4373 -0.0001 7 6 5.6208 2.0548 0.0039 8 6 5.6441 0.6739 -0.0023 9 6 6.8450 -0.1624 -0.0030 10 6 6.7306 -1.5099 -0.0037 11 6 7.9320 -2.3466 -0.0038 12 8 9.0338 -1.8294 -0.0084 13 7 7.8181 -3.6895 -0.0049 14 6 9.0203 -4.5267 -0.0045 15 1 9.7989 -4.0440 0.5861 16 6 8.6961 -5.8709 0.5946 17 1 8.7782 -6.7642 -0.0068 18 6 8.2946 -5.9605 1.9106 19 7 7.9007 -7.1155 2.4009 20 14 8.3103 -4.4411 2.9973 21 1 7.0434 -3.6886 2.8143 22 1 8.4420 -4.8505 4.4187 23 1 9.4582 -3.5765 2.6229 24 6 9.5120 -4.7139 -1.4412 25 9 9.9257 -3.4809 -1.9569 26 9 10.5872 -5.6089 -1.4532 27 9 8.4727 -5.2230 -2.2272 28 8 4.3744 0.2285 -0.0019 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8954 3.4478 0.0011 33 1 6.4773 2.7127 0.0089 34 1 7.8227 0.2965 -0.0030 35 1 5.7531 -1.9688 -0.0041 36 1 6.9400 -4.1017 -0.0061 37 1 7.6186 -7.1786 3.3268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:08 Heat of formation + Delta-G solvation = -241.176315 kcal Electronic energy + Delta-G solvation = -29889.413105 eV Core-core repulsion = 24798.459360 eV Total energy + Delta-G solvation = -5090.953745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15030 -46.66241 -46.63386 -42.94356 -40.52538 -39.29016 -36.91751 -35.16032 -34.00496 -33.41875 -32.56482 -30.33283 -29.21237 -27.85453 -25.08442 -24.95914 -22.79277 -21.97896 -21.27459 -20.64063 -19.58503 -18.76703 -18.20138 -17.67148 -17.47183 -17.13749 -17.02284 -16.91813 -16.47155 -16.11734 -15.81910 -15.11306 -14.44070 -14.39501 -14.16564 -13.64054 -13.60125 -13.53727 -13.52032 -13.47334 -13.20155 -13.10216 -12.90484 -12.83532 -12.73069 -12.65434 -12.55207 -12.31811 -11.85396 -11.26119 -11.23361 -11.22733 -10.84364 -10.70525 -10.31112 -10.27285 -9.99393 -9.66160 -9.04179 -8.64898 -8.38528 -6.56656 -4.70530 0.02749 1.12582 1.87684 2.29920 2.50370 2.59561 3.03580 3.15419 3.23382 3.43776 3.53837 3.86053 4.05437 4.24013 4.42244 4.48584 4.73223 4.82259 4.86937 4.91775 4.98665 5.05964 5.11349 5.15400 5.18266 5.27400 5.38034 5.51461 5.70936 5.82627 5.96544 6.08732 6.34502 6.51475 6.82029 6.93967 7.24273 7.78253 8.11794 8.45225 8.61252 8.96908 10.51747 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.002829 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.802836 B = 9895.185534 C =10577.447489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.346 6.346 3 C 0.555 3.445 4 O -0.489 6.489 5 C -0.070 4.070 6 C -0.100 4.100 7 C -0.196 4.196 8 C 0.064 3.936 9 C -0.036 4.036 10 C -0.154 4.154 11 C 0.526 3.474 12 O -0.537 6.537 13 N -0.705 5.705 14 C 0.201 3.799 15 H 0.094 0.906 16 C -0.540 4.540 17 H 0.096 0.904 18 C 0.098 3.902 19 N -0.860 5.860 20 Si 0.873 3.127 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.257 1.257 24 C 0.443 3.557 25 F -0.193 7.193 26 F -0.183 7.183 27 F -0.189 7.189 28 O -0.140 6.140 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.405 0.595 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 14.988 -3.666 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.262 6.262 3 C 0.400 3.600 4 O -0.379 6.379 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.215 4.215 8 C 0.011 3.989 9 C -0.056 4.056 10 C -0.175 4.175 11 C 0.313 3.687 12 O -0.416 6.416 13 N -0.358 5.358 14 C 0.098 3.902 15 H 0.111 0.889 16 C -0.578 4.578 17 H 0.114 0.886 18 C -0.112 4.112 19 N -0.493 5.493 20 Si 0.699 3.301 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.182 1.182 24 C 0.388 3.612 25 F -0.175 7.175 26 F -0.164 7.164 27 F -0.171 7.171 28 O -0.034 6.034 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.154 0.846 36 H 0.242 0.758 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.721 15.154 -3.535 18.348 hybrid contribution -0.680 0.546 0.404 0.961 sum -10.401 15.700 -3.131 19.091 Atomic orbital electron populations 1.23392 0.75096 1.04388 1.02828 1.86687 1.24171 1.31559 1.83798 1.19234 0.85412 0.82205 0.73197 1.90935 1.64320 1.35938 1.46680 1.21026 0.87823 0.86042 1.17181 1.22106 0.92240 0.98585 0.99005 1.22227 0.97822 0.93409 1.08065 1.21523 0.82330 0.93141 1.01866 1.21572 0.93586 0.92582 0.97818 1.23544 0.99635 0.94648 0.99634 1.18508 0.89092 0.83532 0.77536 1.90808 1.27422 1.73719 1.49701 1.47485 1.11583 1.04891 1.71804 1.20290 0.87793 0.94740 0.87344 0.88895 1.20799 1.49281 0.89926 0.97757 0.88578 1.24898 0.92528 0.96400 0.97356 1.69862 1.38864 1.24692 1.15919 0.86856 0.80247 0.83071 0.79885 1.19403 1.20988 1.18166 1.21409 0.75204 0.72923 0.91677 1.93150 1.90833 1.44122 1.89364 1.93114 1.57253 1.69033 1.97033 1.93088 1.58772 1.87552 1.77654 1.84164 1.15344 1.34452 1.69486 0.87454 0.91488 0.91477 0.81428 0.81344 0.81403 0.84649 0.75817 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.35 -3.83 10.58 -42.47 -0.45 -4.28 16 3 C 0.55 6.60 7.94 34.21 0.27 6.87 16 4 O -0.49 -6.32 16.66 -19.32 -0.32 -6.64 16 5 C -0.07 -0.83 7.21 -36.27 -0.26 -1.09 16 6 C -0.10 -0.97 10.64 -39.17 -0.42 -1.39 16 7 C -0.20 -1.85 10.88 -39.06 -0.42 -2.28 16 8 C 0.06 0.75 7.02 -36.37 -0.26 0.49 16 9 C -0.04 -0.45 9.64 -37.39 -0.36 -0.81 16 10 C -0.15 -2.24 9.67 -37.37 -0.36 -2.60 16 11 C 0.53 9.78 7.14 -12.98 -0.09 9.68 16 12 O -0.54 -11.30 14.79 5.18 0.08 -11.22 16 13 N -0.71 -13.86 3.19 -56.34 -0.18 -14.04 16 14 C 0.20 4.48 1.41 -69.09 -0.10 4.39 16 15 H 0.09 2.19 6.29 -51.93 -0.33 1.86 16 16 C -0.54 -13.49 8.64 -34.44 -0.30 -13.79 16 17 H 0.10 2.63 7.91 -52.48 -0.42 2.21 16 18 C 0.10 2.48 5.46 -17.82 -0.10 2.39 16 19 N -0.86 -23.19 13.96 55.43 0.77 -22.42 16 20 Si 0.87 19.64 26.13 -169.99 -4.44 15.20 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.26 -5.93 6.55 56.52 0.37 -5.56 16 24 C 0.44 9.51 2.79 37.15 0.10 9.61 16 25 F -0.19 -4.09 15.82 2.25 0.04 -4.05 16 26 F -0.18 -3.98 16.83 2.25 0.04 -3.94 16 27 F -0.19 -3.96 16.97 2.25 0.04 -3.92 16 28 O -0.14 -1.79 10.29 3.57 0.04 -1.75 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.17 1.95 7.53 -52.48 -0.39 1.56 16 35 H 0.14 1.74 7.78 -52.49 -0.41 1.34 16 36 H 0.40 7.28 8.57 -40.82 -0.35 6.93 16 37 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -30.22 351.92 -3.49 -33.71 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.17 Total: 5.24 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -1.22 Total: 12.81 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.59 Total: -36.46 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.66 Total: -23.90 kcal Atomic # 9 Polarization: -12.02 SS G_CDS: 0.11 Total: -11.91 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.44 Total: 15.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.22 -3.49 -33.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.466 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds