Wall clock time and date at job start Wed Apr 1 2020 04:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34873 * 116.99462 * 2 1 4 4 O 1.21578 * 120.00493 * 359.97438 * 3 2 1 5 5 C 1.46836 * 119.99710 * 180.02562 * 3 2 1 6 6 C 1.37802 * 125.77818 * 180.02562 * 5 3 2 7 7 C 1.39767 * 106.88967 * 179.79223 * 6 5 3 8 8 C 1.38106 * 106.84933 * 0.35203 * 7 6 5 9 9 C 1.46347 * 125.81686 * 179.90185 * 8 7 6 10 10 C 1.35233 * 120.00063 * 179.71495 * 9 8 7 11 11 C 1.46401 * 120.00182 * 180.02562 * 10 9 8 12 12 O 1.21710 * 119.99910 * 359.72742 * 11 10 9 13 13 N 1.34773 * 120.00437 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00508 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46446 * 35.00221 * 14 13 11 16 16 C 1.50696 * 109.47152 * 154.99766 * 14 13 11 17 17 H 1.08003 * 119.99778 * 116.81036 * 16 14 13 18 18 C 1.37878 * 120.00405 * 296.80891 * 16 14 13 19 19 N 1.31512 * 120.00288 * 174.10516 * 18 16 14 20 20 Si 1.86801 * 119.99702 * 354.10306 * 18 16 14 21 21 H 1.48491 * 109.47200 * 85.17174 * 20 18 16 22 22 H 1.48504 * 109.47137 * 205.16960 * 20 18 16 23 23 H 1.48499 * 109.47382 * 325.16437 * 20 18 16 24 24 C 1.52994 * 109.47175 * 275.00125 * 14 13 11 25 25 F 1.39905 * 109.47332 * 65.24549 * 24 14 13 26 26 F 1.39903 * 109.47134 * 185.24346 * 24 14 13 27 27 F 1.39895 * 109.47276 * 305.24576 * 24 14 13 28 28 O 1.34557 * 108.36604 * 359.64355 * 8 7 6 29 29 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 300.00093 * 1 2 3 31 31 H 1.08998 * 109.47421 * 60.00312 * 1 2 3 32 32 H 1.07999 * 126.55722 * 0.02562 * 6 5 3 33 33 H 1.08004 * 126.58240 * 180.24139 * 7 6 5 34 34 H 1.08005 * 120.00366 * 359.71729 * 9 8 7 35 35 H 1.07994 * 120.00044 * 0.02562 * 10 9 8 36 36 H 0.96999 * 119.99731 * 0.02562 * 13 11 10 37 37 H 0.96998 * 120.00472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2018 0.0000 4 8 1.4020 2.2214 -0.0005 5 6 3.5306 1.2787 -0.0006 6 6 4.2765 2.4373 -0.0001 7 6 5.6208 2.0548 0.0039 8 6 5.6441 0.6739 -0.0023 9 6 6.8450 -0.1624 -0.0030 10 6 6.7306 -1.5099 -0.0037 11 6 7.9320 -2.3466 -0.0038 12 8 9.0338 -1.8294 -0.0084 13 7 7.8181 -3.6895 -0.0049 14 6 9.0203 -4.5267 -0.0045 15 1 9.7989 -4.0440 0.5861 16 6 8.6961 -5.8709 0.5946 17 1 8.7782 -6.7642 -0.0068 18 6 8.2946 -5.9605 1.9106 19 7 7.9007 -7.1155 2.4009 20 14 8.3103 -4.4411 2.9973 21 1 7.0434 -3.6886 2.8143 22 1 8.4420 -4.8505 4.4187 23 1 9.4582 -3.5765 2.6229 24 6 9.5120 -4.7139 -1.4412 25 9 9.9257 -3.4809 -1.9569 26 9 10.5872 -5.6089 -1.4532 27 9 8.4727 -5.2230 -2.2272 28 8 4.3744 0.2285 -0.0019 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8954 3.4478 0.0011 33 1 6.4773 2.7127 0.0089 34 1 7.8227 0.2965 -0.0030 35 1 5.7531 -1.9688 -0.0041 36 1 6.9400 -4.1017 -0.0061 37 1 7.6186 -7.1786 3.3268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:07 Heat of formation + Delta-G solvation = -259.650408 kcal Electronic energy + Delta-G solvation = -29890.214202 eV Core-core repulsion = 24798.459360 eV Total energy + Delta-G solvation = -5091.754842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.89879 -48.40420 -48.38281 -43.79208 -41.37001 -40.78483 -37.75875 -36.82598 -35.08495 -34.45075 -34.25338 -31.56964 -30.52893 -28.59726 -26.96506 -25.98726 -23.89171 -23.00782 -22.59800 -21.76843 -20.86896 -19.94638 -19.57693 -19.37440 -18.68281 -18.54812 -18.33060 -18.07448 -17.98080 -17.20160 -16.94056 -16.40341 -16.05908 -15.70362 -15.30626 -15.27654 -15.15780 -14.85459 -14.83653 -14.60989 -14.58105 -14.51315 -14.38285 -14.30403 -14.18850 -13.78008 -13.62289 -13.42180 -13.13723 -12.99085 -12.56563 -12.12870 -12.09120 -11.95421 -11.90815 -11.76080 -11.24457 -11.12900 -10.95498 -10.24262 -9.35560 -8.53674 -6.71635 -0.93246 0.20454 1.07995 1.25284 1.30609 1.36719 1.43099 1.66559 1.79228 1.89781 2.09938 2.17054 2.30165 2.92500 3.14836 3.26325 3.36551 3.55110 3.66987 3.70635 3.95969 4.04076 4.19874 4.29448 4.34722 4.45449 4.53746 4.66003 4.68587 4.85364 4.92448 5.03888 5.06562 5.23570 5.33293 5.65676 5.86774 6.40474 6.41883 6.57087 6.98846 7.12588 8.58825 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.002829 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.802836 B = 9895.185534 C =10577.447489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.554 3.446 4 O -0.505 6.505 5 C -0.085 4.085 6 C -0.093 4.093 7 C -0.167 4.167 8 C 0.035 3.965 9 C 0.003 3.997 10 C -0.186 4.186 11 C 0.529 3.471 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.211 3.789 15 H 0.082 0.918 16 C -0.544 4.544 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.902 5.902 20 Si 0.924 3.076 21 H -0.248 1.248 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.446 3.554 25 F -0.189 7.189 26 F -0.186 7.186 27 F -0.186 7.186 28 O -0.157 6.157 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.191 0.809 33 H 0.203 0.797 34 H 0.180 0.820 35 H 0.148 0.852 36 H 0.414 0.586 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 17.860 -3.574 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.400 3.600 4 O -0.396 6.396 5 C -0.136 4.136 6 C -0.113 4.113 7 C -0.186 4.186 8 C -0.017 4.017 9 C -0.016 4.016 10 C -0.207 4.207 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.106 3.894 15 H 0.100 0.900 16 C -0.582 4.582 17 H 0.082 0.918 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.748 3.252 21 H -0.172 1.172 22 H -0.209 1.209 23 H -0.190 1.190 24 C 0.391 3.609 25 F -0.170 7.170 26 F -0.168 7.168 27 F -0.167 7.167 28 O -0.052 6.052 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.209 0.791 33 H 0.220 0.780 34 H 0.197 0.803 35 H 0.166 0.834 36 H 0.251 0.749 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.666 18.027 -3.455 21.229 hybrid contribution -0.463 -0.221 0.292 0.590 sum -11.128 17.805 -3.164 21.234 Atomic orbital electron populations 1.23708 0.73178 1.06197 1.03372 1.86677 1.26200 1.31283 1.83453 1.19331 0.85638 0.82243 0.72812 1.90918 1.64702 1.36343 1.47636 1.21337 0.87963 0.86663 1.17627 1.22497 0.92154 0.99059 0.97551 1.22684 0.98704 0.92632 1.04566 1.21553 0.81802 0.93961 1.04342 1.21744 0.94528 0.91907 0.93411 1.23228 0.98221 0.94925 1.04322 1.18950 0.90031 0.82956 0.76141 1.90786 1.28866 1.73949 1.51094 1.47083 1.10900 1.05499 1.72664 1.19899 0.88433 0.93604 0.87471 0.90018 1.20737 1.49399 0.90225 0.97793 0.91776 1.25448 0.92060 0.98484 0.98262 1.69942 1.40590 1.26543 1.16572 0.86061 0.80728 0.80173 0.78245 1.17200 1.20869 1.19022 1.21281 0.75174 0.72995 0.91498 1.93155 1.90789 1.43817 1.89256 1.93106 1.57420 1.69198 1.97043 1.93092 1.58617 1.87530 1.77489 1.84137 1.15870 1.35183 1.70047 0.85103 0.91006 0.90907 0.79143 0.78001 0.80295 0.83386 0.74858 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -7.56 10.58 -56.43 -0.60 -8.16 16 3 C 0.55 12.43 7.94 70.07 0.56 12.98 16 4 O -0.50 -12.32 16.66 19.58 0.33 -11.99 16 5 C -0.09 -1.84 7.21 24.42 0.18 -1.66 16 6 C -0.09 -1.50 10.64 22.54 0.24 -1.26 16 7 C -0.17 -2.46 10.88 22.61 0.25 -2.22 16 8 C 0.04 0.72 7.02 24.35 0.17 0.89 16 9 C 0.00 0.08 9.64 23.69 0.23 0.30 16 10 C -0.19 -5.09 9.67 23.70 0.23 -4.86 16 11 C 0.53 19.04 7.14 86.37 0.62 19.65 16 12 O -0.57 -23.13 14.79 -4.38 -0.06 -23.20 16 13 N -0.71 -27.43 3.19 -450.36 -1.44 -28.87 16 14 C 0.21 9.41 1.41 44.24 0.06 9.47 16 15 H 0.08 3.86 6.29 -2.39 -0.02 3.85 16 16 C -0.54 -27.71 8.64 25.60 0.22 -27.49 16 17 H 0.06 3.63 7.91 -2.91 -0.02 3.61 16 18 C 0.06 3.25 5.46 84.66 0.46 3.72 16 19 N -0.90 -49.41 13.96 21.45 0.30 -49.11 16 20 Si 0.92 40.22 26.13 68.60 1.79 42.01 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.86 6.55 99.48 0.65 -11.21 16 24 C 0.45 19.15 2.79 71.98 0.20 19.35 16 25 F -0.19 -7.87 15.82 44.97 0.71 -7.16 16 26 F -0.19 -8.17 16.83 44.97 0.76 -7.41 16 27 F -0.19 -7.77 16.97 44.97 0.76 -7.00 16 28 O -0.16 -3.70 10.29 -8.81 -0.09 -3.79 16 29 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.18 3.59 7.53 -2.91 -0.02 3.57 16 35 H 0.15 3.60 7.78 -2.91 -0.02 3.58 16 36 H 0.41 14.66 8.57 -92.71 -0.79 13.86 16 37 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -65.31 351.92 7.38 -57.93 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.31 Total: 16.31 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: 4.61 Total: 30.43 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.14 Total: -77.98 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.43 Total: -47.13 kcal Atomic # 9 Polarization: -23.80 SS G_CDS: 2.23 Total: -21.57 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.79 Total: 42.01 kcal Total: -65.31 7.38 -57.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.719 kcal (2) G-P(sol) polarization free energy of solvation -65.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds