Wall clock time and date at job start Wed Apr 1 2020 04:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 N 1.46499 * 109.47548 * 179.97438 * 11 10 9 13 13 S 1.65597 * 120.00067 * 165.00226 * 12 11 10 14 14 O 1.42100 * 104.27861 * 181.07462 * 13 12 11 15 15 O 1.42108 * 104.27813 * 308.92882 * 13 12 11 16 16 C 1.81398 * 104.45212 * 65.00195 * 13 12 11 17 17 C 1.52992 * 109.47519 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47581 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99510 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00199 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00037 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99876 * 22 20 18 24 24 H 1.48497 * 109.47138 * 209.99965 * 22 20 18 25 25 H 1.48499 * 109.47047 * 330.00065 * 22 20 18 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 29 29 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 31 31 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 33 33 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 34 34 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 35 35 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 36 36 H 0.97002 * 119.99952 * 345.00557 * 12 11 10 37 37 H 1.08996 * 109.47125 * 300.00170 * 16 13 12 38 38 H 1.09003 * 109.46781 * 60.00022 * 16 13 12 39 39 H 1.09004 * 109.47316 * 300.00551 * 17 16 13 40 40 H 1.09005 * 109.47205 * 59.99802 * 17 16 13 41 41 H 0.96991 * 120.00170 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 7 5.2264 -1.7012 -1.4380 13 16 5.2677 -2.6624 -2.7858 14 8 6.1042 -3.7497 -2.4155 15 8 3.8998 -2.8683 -3.1114 16 6 6.0751 -1.6389 -4.0472 17 6 6.1743 -2.4256 -5.3556 18 6 6.8445 -1.5751 -6.4037 19 1 7.1678 -0.5737 -6.1606 20 6 7.0450 -2.0754 -7.6727 21 7 7.6304 -1.3334 -8.5872 22 14 6.4853 -3.8073 -8.0932 23 1 5.0894 -3.7673 -8.5983 24 1 7.3740 -4.3746 -9.1388 25 1 6.5473 -4.6566 -6.8766 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2128 2.3199 -0.0098 30 1 1.3330 4.5114 -0.0016 31 1 5.1350 2.5745 -0.0001 32 1 5.2320 0.2253 0.4340 33 1 3.7459 -0.7421 0.5884 34 1 3.4480 -0.6774 -1.8724 35 1 4.9340 0.2902 -2.0269 36 1 5.7318 -1.9509 -0.6486 37 1 5.4896 -0.7342 -4.2104 38 1 7.0756 -1.3683 -3.7096 39 1 6.7601 -3.3303 -5.1921 40 1 5.1740 -2.6967 -5.6933 41 1 7.7711 -1.6851 -9.4801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116046840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:17 Heat of formation + Delta-G solvation = -104.473026 kcal Electronic energy + Delta-G solvation = -25461.134750 eV Core-core repulsion = 21494.118761 eV Total energy + Delta-G solvation = -3967.015989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.72906 -38.07426 -36.82148 -36.60591 -35.91567 -35.50879 -33.93279 -32.74809 -31.46708 -30.39189 -28.51623 -27.48046 -25.95431 -23.81504 -22.62303 -21.64044 -21.21880 -19.05151 -18.40134 -17.59746 -16.98058 -16.88454 -16.51238 -16.23040 -15.95621 -15.53356 -14.97559 -14.79974 -14.68167 -14.30002 -14.10300 -13.73889 -13.64813 -13.51870 -12.82146 -12.79332 -12.50491 -12.41151 -12.11749 -11.89361 -11.75271 -11.68045 -11.62748 -11.51450 -11.43904 -11.23871 -11.16894 -11.00991 -10.95691 -10.43589 -10.13543 -9.78732 -9.47664 -9.36388 -9.13169 -8.65074 -8.43779 -6.15333 -4.16504 0.66582 0.82273 0.84565 1.86417 2.88842 3.02870 3.19957 3.27565 3.34859 3.39262 4.15471 4.24543 4.32196 4.37020 4.59346 4.64950 4.72938 4.80257 4.82852 4.84286 4.97990 5.07345 5.16480 5.17822 5.32182 5.41364 5.49013 5.52497 5.57485 5.68309 5.74469 5.81991 5.98321 6.04219 6.20679 6.30413 6.83477 6.93178 6.94576 7.06921 7.56242 8.37963 8.85947 9.44365 10.97080 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.002675 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.595062 B =10464.659874 C =11660.365203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.140 3.860 4 C -0.196 4.196 5 C -0.071 4.071 6 C -0.071 4.071 7 Cl -0.071 7.071 8 C -0.065 4.065 9 C -0.102 4.102 10 C -0.076 4.076 11 C 0.120 3.880 12 N -1.125 6.125 13 S 2.591 3.409 14 O -0.968 6.968 15 O -0.966 6.966 16 C -0.583 4.583 17 C -0.007 4.007 18 C -0.519 4.519 19 H 0.078 0.922 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.870 3.130 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 9.680 22.587 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.094 3.906 4 C -0.215 4.215 5 C -0.090 4.090 6 C -0.098 4.098 7 Cl -0.042 7.042 8 C -0.084 4.084 9 C -0.104 4.104 10 C -0.115 4.115 11 C -0.006 4.006 12 N -0.883 5.883 13 S 2.688 3.312 14 O -0.958 6.958 15 O -0.956 6.956 16 C -0.717 4.717 17 C -0.047 4.047 18 C -0.558 4.558 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.696 3.304 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.186 1.186 26 H 0.122 0.878 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.419 8.772 22.209 27.391 hybrid contribution 0.042 0.143 -0.227 0.271 sum -13.378 8.914 21.982 27.233 Atomic orbital electron populations 1.23147 0.77961 1.04549 1.01381 1.86160 1.21647 1.26056 1.87910 1.18948 0.91800 0.84673 0.95208 1.21188 1.00478 0.91479 1.08378 1.20828 0.92412 0.98092 0.97662 1.20750 0.92852 0.86885 1.09300 1.98375 1.80609 1.28091 1.97164 1.20843 1.00551 0.89397 0.97620 1.19018 0.90532 0.95167 1.05712 1.20593 0.99660 0.94124 0.97112 1.21255 0.96158 0.85811 0.97395 1.55697 1.62341 1.38510 1.31749 1.05539 0.75322 0.75162 0.75129 1.93558 1.69948 1.50631 1.81677 1.93547 1.33330 1.84632 1.84048 1.30294 1.13085 1.14295 1.13979 1.19407 0.98352 0.96130 0.90762 1.20856 1.39223 1.01722 0.94009 0.90413 1.24989 0.94388 0.97600 0.96157 1.69881 1.42499 1.37013 1.03997 0.86920 0.79282 0.85201 0.79020 1.19690 1.20783 1.18590 0.87794 0.92596 0.92257 0.84432 0.84706 0.83953 0.89943 0.89359 0.89866 0.91508 0.75373 0.85766 0.85466 0.94916 0.95376 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.92 9.63 -19.51 -0.19 -3.10 16 3 C 0.14 1.31 6.66 -39.22 -0.26 1.05 16 4 C -0.20 -1.53 9.04 -39.44 -0.36 -1.89 16 5 C -0.07 -0.56 9.82 -39.57 -0.39 -0.95 16 6 C -0.07 -0.63 6.32 -39.49 -0.25 -0.88 16 7 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 8 C -0.07 -0.57 9.46 -39.57 -0.37 -0.94 16 9 C -0.10 -0.95 5.15 -104.48 -0.54 -1.49 16 10 C -0.08 -0.67 5.21 -27.89 -0.15 -0.82 16 11 C 0.12 1.33 6.11 -4.04 -0.02 1.30 16 12 N -1.13 -13.61 5.89 -10.61 -0.06 -13.67 16 13 S 2.59 43.68 5.46 -107.50 -0.59 43.09 16 14 O -0.97 -18.92 18.08 -57.54 -1.04 -19.96 16 15 O -0.97 -18.99 17.50 -57.54 -1.01 -19.99 16 16 C -0.58 -10.64 6.01 37.15 0.22 -10.42 16 17 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 18 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 22 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.14 0.75 6.30 -52.49 -0.33 0.42 16 30 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 33 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 34 H 0.08 1.04 7.70 -51.93 -0.40 0.64 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 4.03 8.62 -34.47 -0.30 3.73 16 37 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 38 H 0.13 2.11 8.14 -51.92 -0.42 1.68 16 39 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 40 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -35.93 373.88 -9.84 -45.77 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.53 Total: 0.96 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -1.67 Total: -27.10 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.71 Total: -40.06 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -2.23 Total: -43.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 43.68 SS G_CDS: -0.59 Total: 43.09 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.93 -9.84 -45.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116046840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.702 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds