Wall clock time and date at job start Wed Apr 1 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 N 1.46499 * 109.47548 * 179.97438 * 11 10 9 13 13 S 1.65597 * 120.00067 * 165.00226 * 12 11 10 14 14 O 1.42100 * 104.27861 * 181.07462 * 13 12 11 15 15 O 1.42108 * 104.27813 * 308.92882 * 13 12 11 16 16 C 1.81398 * 104.45212 * 65.00195 * 13 12 11 17 17 C 1.52992 * 109.47519 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47581 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99510 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00199 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00037 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99876 * 22 20 18 24 24 H 1.48497 * 109.47138 * 209.99965 * 22 20 18 25 25 H 1.48499 * 109.47047 * 330.00065 * 22 20 18 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 29 29 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 31 31 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 33 33 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 34 34 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 35 35 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 36 36 H 0.97002 * 119.99952 * 345.00557 * 12 11 10 37 37 H 1.08996 * 109.47125 * 300.00170 * 16 13 12 38 38 H 1.09003 * 109.46781 * 60.00022 * 16 13 12 39 39 H 1.09004 * 109.47316 * 300.00551 * 17 16 13 40 40 H 1.09005 * 109.47205 * 59.99802 * 17 16 13 41 41 H 0.96991 * 120.00170 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 7 5.2264 -1.7012 -1.4380 13 16 5.2677 -2.6624 -2.7858 14 8 6.1042 -3.7497 -2.4155 15 8 3.8998 -2.8683 -3.1114 16 6 6.0751 -1.6389 -4.0472 17 6 6.1743 -2.4256 -5.3556 18 6 6.8445 -1.5751 -6.4037 19 1 7.1678 -0.5737 -6.1606 20 6 7.0450 -2.0754 -7.6727 21 7 7.6304 -1.3334 -8.5872 22 14 6.4853 -3.8073 -8.0932 23 1 5.0894 -3.7673 -8.5983 24 1 7.3740 -4.3746 -9.1388 25 1 6.5473 -4.6566 -6.8766 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2128 2.3199 -0.0098 30 1 1.3330 4.5114 -0.0016 31 1 5.1350 2.5745 -0.0001 32 1 5.2320 0.2253 0.4340 33 1 3.7459 -0.7421 0.5884 34 1 3.4480 -0.6774 -1.8724 35 1 4.9340 0.2902 -2.0269 36 1 5.7318 -1.9509 -0.6486 37 1 5.4896 -0.7342 -4.2104 38 1 7.0756 -1.3683 -3.7096 39 1 6.7601 -3.3303 -5.1921 40 1 5.1740 -2.6967 -5.6933 41 1 7.7711 -1.6851 -9.4801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116046840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:16 Heat of formation + Delta-G solvation = -130.127294 kcal Electronic energy + Delta-G solvation = -25462.247203 eV Core-core repulsion = 21494.118761 eV Total energy + Delta-G solvation = -3968.128442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33800 -38.69080 -38.17740 -37.42994 -37.02961 -36.70890 -35.88073 -33.50926 -33.45879 -31.00159 -29.22435 -28.02712 -27.86888 -24.60738 -23.23073 -23.18399 -22.23756 -20.34671 -19.39673 -19.00725 -18.38717 -17.61907 -17.48879 -17.06054 -16.98454 -16.65641 -16.37120 -16.02940 -15.50850 -15.49028 -15.17566 -14.81817 -14.77906 -14.37136 -14.29757 -13.79290 -13.55877 -13.23169 -13.21895 -13.10421 -13.05858 -13.03072 -12.93636 -12.82128 -12.52854 -12.33435 -12.21154 -12.12696 -11.92642 -11.70158 -11.62748 -11.58650 -11.27566 -10.83446 -10.35549 -9.97226 -9.07688 -8.35604 -6.41303 -0.69045 0.17884 0.21087 1.21889 1.32946 1.34703 1.45067 1.82756 2.30552 2.34882 2.55295 2.78158 2.98414 3.27615 3.62914 3.76624 3.89038 4.03127 4.05963 4.09973 4.15786 4.24457 4.39885 4.42354 4.45636 4.57952 4.62637 4.68064 4.74360 4.80270 4.92134 5.08517 5.09872 5.13224 5.20816 5.24843 5.34409 5.48576 5.60061 6.16749 6.17995 6.36278 6.64881 7.23085 8.79976 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.002675 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.595062 B =10464.659874 C =11660.365203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.127 3.873 4 C -0.196 4.196 5 C -0.073 4.073 6 C -0.084 4.084 7 Cl -0.075 7.075 8 C -0.069 4.069 9 C -0.116 4.116 10 C -0.069 4.069 11 C 0.113 3.887 12 N -1.106 6.106 13 S 2.624 3.376 14 O -0.993 6.993 15 O -0.992 6.992 16 C -0.590 4.590 17 C -0.018 4.018 18 C -0.527 4.527 19 H 0.049 0.951 20 C 0.013 3.987 21 N -0.940 5.940 22 Si 0.926 3.074 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.249 1.249 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.427 0.573 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.224 9.393 24.106 29.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.080 3.920 4 C -0.215 4.215 5 C -0.091 4.091 6 C -0.111 4.111 7 Cl -0.046 7.046 8 C -0.088 4.088 9 C -0.117 4.117 10 C -0.108 4.108 11 C -0.013 4.013 12 N -0.868 5.868 13 S 2.719 3.281 14 O -0.983 6.983 15 O -0.982 6.982 16 C -0.721 4.721 17 C -0.057 4.057 18 C -0.566 4.566 19 H 0.067 0.933 20 C -0.186 4.186 21 N -0.580 5.580 22 Si 0.748 3.252 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.172 1.172 26 H 0.129 0.871 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.264 0.736 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.481 8.484 23.736 29.070 hybrid contribution 0.333 0.352 -0.621 0.788 sum -14.148 8.837 23.115 28.505 Atomic orbital electron populations 1.23382 0.76457 1.05511 1.02550 1.86127 1.23380 1.26431 1.88000 1.19186 0.92167 0.85144 0.95461 1.21439 1.01602 0.90897 1.07556 1.21085 0.92290 0.98889 0.96871 1.20919 0.93412 0.86811 1.09965 1.98372 1.80737 1.28311 1.97219 1.20993 1.01217 0.89233 0.97353 1.19104 0.90796 0.95324 1.06516 1.20538 1.00852 0.93928 0.95476 1.21452 0.95327 0.85283 0.99280 1.55209 1.62468 1.38562 1.30549 1.04344 0.74047 0.74547 0.75122 1.93520 1.70479 1.52191 1.82110 1.93516 1.34672 1.85126 1.84862 1.30297 1.14853 1.14679 1.12299 1.19375 0.97823 0.96174 0.92314 1.21189 1.38895 1.01208 0.95326 0.93258 1.25884 0.94631 1.01835 0.96227 1.70010 1.44247 1.39140 1.04631 0.86013 0.79380 0.80371 0.79400 1.18548 1.19968 1.17217 0.87072 0.90838 0.91634 0.82289 0.83030 0.82869 0.87757 0.89605 0.91364 0.90203 0.73580 0.84369 0.83943 0.94874 0.95070 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.84 9.63 -92.74 -0.89 -6.74 16 3 C 0.13 2.19 6.66 22.50 0.15 2.34 16 4 C -0.20 -2.71 9.04 22.36 0.20 -2.50 16 5 C -0.07 -1.02 9.82 22.28 0.22 -0.80 16 6 C -0.08 -1.38 6.32 22.33 0.14 -1.24 16 7 Cl -0.08 -1.24 28.95 -2.72 -0.08 -1.32 16 8 C -0.07 -1.11 9.46 22.28 0.21 -0.90 16 9 C -0.12 -1.97 5.15 -19.77 -0.10 -2.07 16 10 C -0.07 -1.09 5.21 29.85 0.16 -0.94 16 11 C 0.11 2.28 6.11 86.38 0.53 2.81 16 12 N -1.11 -24.43 5.89 -187.49 -1.10 -25.53 16 13 S 2.62 84.37 5.46 -56.49 -0.31 84.06 16 14 O -0.99 -37.23 18.08 -127.65 -2.31 -39.54 16 15 O -0.99 -37.76 17.50 -127.65 -2.23 -40.00 16 16 C -0.59 -20.83 6.01 71.98 0.43 -20.39 16 17 C -0.02 -0.83 4.05 29.84 0.12 -0.71 16 18 C -0.53 -29.84 9.66 25.60 0.25 -29.59 16 19 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 20 C 0.01 0.74 5.47 84.65 0.46 1.20 16 21 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 22 Si 0.93 43.94 27.47 68.60 1.88 45.83 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 26 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.48 7.67 -2.38 -0.02 0.47 16 28 H 0.07 0.58 7.65 -2.39 -0.02 0.57 16 29 H 0.16 1.37 6.30 -2.92 -0.02 1.35 16 30 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.10 1.16 8.05 -2.39 -0.02 1.14 16 33 H 0.09 1.40 7.69 -2.38 -0.02 1.39 16 34 H 0.07 1.62 7.70 -2.39 -0.02 1.60 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.43 7.24 8.62 -96.74 -0.83 6.41 16 37 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 38 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 39 H 0.03 1.54 7.20 -2.38 -0.02 1.52 16 40 H 0.03 1.43 7.57 -2.38 -0.02 1.41 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.13 373.88 -0.69 -77.82 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.17 Total: 14.64 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 3.88 Total: -51.53 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -0.80 Total: -83.23 kcal Atomic # 8 Polarization: -80.84 SS G_CDS: -5.43 Total: -86.27 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 84.37 SS G_CDS: -0.31 Total: 84.06 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -77.13 -0.69 -77.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116046840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.302 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds