Wall clock time and date at job start Wed Apr 1 2020 04:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46971 * 2 1 4 4 S 1.65597 * 119.99840 * 165.00058 * 3 2 1 5 5 O 1.42098 * 106.40487 * 311.45717 * 4 3 2 6 6 O 1.42104 * 106.40509 * 178.53537 * 4 3 2 7 7 C 1.76202 * 107.21843 * 64.99995 * 4 3 2 8 8 C 1.38871 * 120.34105 * 89.99989 * 7 4 3 9 9 C 1.38315 * 118.50221 * 180.02562 * 8 7 4 10 10 C 1.39122 * 119.10067 * 359.97438 * 9 8 7 11 11 N 1.39154 * 119.70434 * 179.97438 * 10 9 8 12 12 C 1.38385 * 119.99779 * 356.81781 * 11 10 9 13 13 C 1.38965 * 120.00328 * 298.20316 * 12 11 10 14 14 H 1.08000 * 120.00211 * 154.71876 * 13 12 11 15 15 C 1.40850 * 119.99838 * 334.71145 * 13 12 11 16 16 N 1.30332 * 119.99930 * 163.79979 * 15 13 12 17 17 Si 1.86800 * 120.00063 * 343.80529 * 15 13 12 18 18 H 1.48503 * 109.46997 * 88.09924 * 17 15 13 19 19 H 1.48505 * 109.46921 * 208.09281 * 17 15 13 20 20 H 1.48493 * 109.47050 * 328.09242 * 17 15 13 21 21 C 1.41145 * 119.99631 * 118.20935 * 12 11 10 22 22 C 1.43198 * 119.99617 * 184.50038 * 21 12 11 23 23 N 9.49657 * 115.91985 * 61.51176 * 4 1 2 24 24 C 1.43197 * 120.00067 * 4.49622 * 21 12 11 25 25 N 9.70355 * 156.71940 * 258.54475 * 2 1 3 26 26 N 1.32395 * 120.58647 * 0.02562 * 10 9 8 27 27 C 1.31941 * 121.63449 * 359.97438 * 26 10 9 28 28 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47213 * 300.00147 * 1 2 3 30 30 H 1.09006 * 109.47401 * 60.00062 * 1 2 3 31 31 H 1.09000 * 109.47213 * 239.99853 * 2 1 3 32 32 H 1.08994 * 109.47055 * 119.99812 * 2 1 3 33 33 H 0.97002 * 119.99924 * 344.99575 * 3 2 1 34 34 H 1.07997 * 120.74455 * 0.02562 * 8 7 4 35 35 H 1.08001 * 120.45628 * 179.72752 * 9 8 7 36 36 H 0.96995 * 119.99747 * 176.81984 * 11 10 9 37 37 H 0.96998 * 120.00097 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.57275 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7001 0.3712 5 8 3.8848 0.9834 1.5647 6 8 3.7651 3.1064 0.2511 7 6 4.5894 0.9737 -0.8933 8 6 4.9257 1.7025 -2.0265 9 6 5.7033 1.0947 -2.9955 10 6 6.1203 -0.2185 -2.8029 11 7 6.9026 -0.8424 -3.7699 12 6 7.2075 -0.1802 -4.9461 13 6 6.1898 0.2062 -5.8099 14 1 6.3389 1.0382 -6.4822 15 6 4.9639 -0.4873 -5.8087 16 7 3.9135 0.0448 -6.3675 17 14 4.8434 -2.1698 -5.0060 18 1 4.5158 -2.0092 -3.5665 19 1 3.7766 -2.9603 -5.6712 20 1 6.1417 -2.8774 -5.1424 21 6 8.5522 0.1027 -5.2686 22 6 8.8619 0.8716 -6.4362 23 7 9.1106 1.4826 -7.3602 24 6 9.6066 -0.3791 -4.4280 25 7 10.4435 -0.7617 -3.7588 26 7 5.7786 -0.8802 -1.7082 27 6 5.0379 -0.3260 -0.7675 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4149 2.1090 -0.2175 34 1 4.5876 2.7210 -2.1484 35 1 5.9798 1.6309 -3.8913 36 1 7.2342 -1.7414 -3.6195 37 1 3.0692 -0.4326 -6.3664 38 1 4.7791 -0.8964 0.1123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:30 Heat of formation + Delta-G solvation = 24.476786 kcal Electronic energy + Delta-G solvation = -27540.687684 eV Core-core repulsion = 23510.448636 eV Total energy + Delta-G solvation = -4030.239048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.44328 -37.76194 -37.27567 -36.07881 -35.86158 -35.49162 -34.92241 -34.24936 -32.57779 -31.38538 -29.97233 -29.25409 -27.57578 -23.87300 -23.54787 -23.08170 -21.47581 -19.72949 -19.41768 -18.19647 -17.75854 -17.72120 -17.28135 -16.57326 -16.44344 -16.25802 -15.35940 -15.03298 -14.62699 -14.42653 -14.39214 -13.48830 -13.44257 -13.25370 -13.17573 -13.02727 -12.92315 -12.70123 -12.25852 -12.17852 -12.13780 -12.05728 -11.93158 -11.90465 -11.77950 -11.72427 -11.66180 -11.39359 -11.17323 -11.09246 -10.85787 -10.54835 -9.97245 -9.82937 -9.77751 -9.44174 -8.71588 -8.04726 -7.73150 -5.66313 0.38155 0.89311 1.41938 1.74610 2.55656 2.64377 2.67822 2.93842 3.14747 3.25671 3.61874 3.65360 3.84253 3.87553 3.99447 4.12117 4.30666 4.58513 4.65628 4.82714 4.87181 4.93253 4.99627 5.10558 5.23362 5.30021 5.37675 5.61034 5.66837 5.79769 5.85284 5.88288 5.95256 6.04764 6.16801 6.46472 6.75085 6.83956 6.92377 7.20362 7.32257 7.59174 7.67721 8.15412 8.72953 8.90080 8.93466 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003889 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.663431 B = 7198.371606 C = 7999.931225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.110 3.890 3 N -1.120 6.120 4 S 2.709 3.291 5 O -0.963 6.963 6 O -0.963 6.963 7 C -0.793 4.793 8 C 0.051 3.949 9 C -0.220 4.220 10 C 0.454 3.546 11 N -0.661 5.661 12 C 0.328 3.672 13 C -0.350 4.350 14 H 0.129 0.871 15 C 0.073 3.927 16 N -0.715 5.715 17 Si 0.912 3.088 18 H -0.242 1.242 19 H -0.279 1.279 20 H -0.247 1.247 21 C -0.289 4.289 22 C 0.321 3.679 23 N -0.518 5.518 24 C 0.303 3.697 25 N -0.521 5.521 26 N -0.547 5.547 27 C 0.242 3.758 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.417 0.583 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.411 0.589 37 H 0.307 0.693 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.207 -2.138 9.637 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.880 5.880 4 S 2.799 3.201 5 O -0.953 6.953 6 O -0.953 6.953 7 C -0.887 4.887 8 C 0.025 3.975 9 C -0.245 4.245 10 C 0.220 3.780 11 N -0.288 5.288 12 C 0.226 3.774 13 C -0.376 4.376 14 H 0.146 0.854 15 C -0.160 4.160 16 N -0.332 5.332 17 Si 0.735 3.265 18 H -0.166 1.166 19 H -0.206 1.206 20 H -0.171 1.171 21 C -0.307 4.307 22 C 0.013 3.987 23 N -0.199 5.199 24 C -0.005 4.005 25 N -0.203 5.203 26 N -0.264 5.264 27 C 0.079 3.921 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.251 0.749 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.250 0.750 37 H 0.120 0.880 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.044 -2.193 9.804 16.465 hybrid contribution -0.893 -0.424 -0.656 1.186 sum -13.937 -2.617 9.148 16.876 Atomic orbital electron populations 1.21951 0.94103 1.02986 1.02738 1.21277 0.96443 0.81573 1.02331 1.55604 1.28971 1.14698 1.88739 1.01314 0.72087 0.73103 0.73607 1.93564 1.83937 1.74689 1.43105 1.93580 1.85236 1.29387 1.87090 1.31256 1.27805 1.08894 1.20734 1.20976 0.89332 0.98376 0.88804 1.21877 1.04391 0.95012 1.03216 1.18423 0.85142 0.88423 0.85983 1.42193 1.51991 1.18913 1.15703 1.16810 0.90755 0.86899 0.82980 1.20156 0.94131 1.11567 1.11782 0.85391 1.26728 0.94001 1.01869 0.93405 1.69391 1.01429 1.37696 1.24639 0.86195 0.80562 0.78793 0.80976 1.16594 1.20592 1.17089 1.12685 0.86719 1.30497 1.00775 1.24514 0.92267 0.90931 0.91028 1.81064 1.08568 1.16718 1.13572 1.25219 0.92211 0.91346 0.91734 1.81182 1.09719 1.16838 1.12570 1.67219 1.18471 1.37986 1.02709 1.22077 0.86374 0.89484 0.94121 0.91016 0.91813 0.91861 0.91646 0.90098 0.74850 0.83411 0.82165 0.75026 0.88049 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 10.05 37.16 0.37 -0.51 16 2 C 0.11 0.81 6.94 -4.04 -0.03 0.78 16 3 N -1.12 -9.42 6.00 -10.62 -0.06 -9.49 16 4 S 2.71 31.97 5.75 -107.50 -0.62 31.36 16 5 O -0.96 -13.37 16.77 -57.17 -0.96 -14.32 16 6 O -0.96 -13.78 17.35 -57.17 -0.99 -14.77 16 7 C -0.79 -10.59 5.96 -39.41 -0.24 -10.82 16 8 C 0.05 0.73 9.64 -39.32 -0.38 0.35 16 9 C -0.22 -3.58 8.76 -39.22 -0.34 -3.92 16 10 C 0.45 7.76 5.29 -154.88 -0.82 6.94 16 11 N -0.66 -11.56 2.25 -9.73 -0.02 -11.58 16 12 C 0.33 6.11 4.46 -83.53 -0.37 5.74 16 13 C -0.35 -6.67 7.17 -38.32 -0.27 -6.95 16 14 H 0.13 2.66 7.29 -52.49 -0.38 2.28 16 15 C 0.07 1.33 5.15 -17.20 -0.09 1.24 16 16 N -0.71 -13.27 13.90 55.60 0.77 -12.50 16 17 Si 0.91 14.92 24.42 -169.99 -4.15 10.77 16 18 H -0.24 -3.92 5.79 56.52 0.33 -3.59 16 19 H -0.28 -4.54 7.11 56.52 0.40 -4.14 16 20 H -0.25 -4.08 6.83 56.52 0.39 -3.69 16 21 C -0.29 -5.82 5.88 -104.95 -0.62 -6.44 16 22 C 0.32 6.93 13.95 -22.50 -0.31 6.61 16 23 N -0.52 -11.79 18.53 41.81 0.77 -11.01 16 24 C 0.30 6.41 14.83 -22.42 -0.33 6.08 16 25 N -0.52 -11.65 18.55 41.91 0.78 -10.88 16 26 N -0.55 -8.93 9.79 -12.40 -0.12 -9.05 16 27 C 0.24 3.39 10.68 -17.57 -0.19 3.20 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.58 7.75 -51.93 -0.40 0.18 16 33 H 0.42 2.71 8.65 -34.47 -0.30 2.41 16 34 H 0.15 1.78 7.70 -52.49 -0.40 1.38 16 35 H 0.16 2.67 6.06 -52.49 -0.32 2.35 16 36 H 0.41 6.88 7.97 -40.82 -0.33 6.55 16 37 H 0.31 5.06 8.29 -40.82 -0.34 4.73 16 38 H 0.17 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -27.80 355.70 -6.31 -34.11 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.45 Total: 9.71 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -3.62 Total: 2.30 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: 2.12 Total: -64.50 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.95 Total: -29.10 kcal Atomic # 14 Polarization: 14.92 SS G_CDS: -4.15 Total: 10.77 kcal Atomic # 16 Polarization: 31.97 SS G_CDS: -0.62 Total: 31.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.80 -6.31 -34.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.587 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds