Wall clock time and date at job start Wed Apr 1 2020 04:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46971 * 2 1 4 4 S 1.65597 * 119.99840 * 165.00058 * 3 2 1 5 5 O 1.42098 * 106.40487 * 311.45717 * 4 3 2 6 6 O 1.42104 * 106.40509 * 178.53537 * 4 3 2 7 7 C 1.76202 * 107.21843 * 64.99995 * 4 3 2 8 8 C 1.38871 * 120.34105 * 89.99989 * 7 4 3 9 9 C 1.38315 * 118.50221 * 180.02562 * 8 7 4 10 10 C 1.39122 * 119.10067 * 359.97438 * 9 8 7 11 11 N 1.39154 * 119.70434 * 179.97438 * 10 9 8 12 12 C 1.38385 * 119.99779 * 356.81781 * 11 10 9 13 13 C 1.38965 * 120.00328 * 298.20316 * 12 11 10 14 14 H 1.08000 * 120.00211 * 154.71876 * 13 12 11 15 15 C 1.40850 * 119.99838 * 334.71145 * 13 12 11 16 16 N 1.30332 * 119.99930 * 163.79979 * 15 13 12 17 17 Si 1.86800 * 120.00063 * 343.80529 * 15 13 12 18 18 H 1.48503 * 109.46997 * 88.09924 * 17 15 13 19 19 H 1.48505 * 109.46921 * 208.09281 * 17 15 13 20 20 H 1.48493 * 109.47050 * 328.09242 * 17 15 13 21 21 C 1.41145 * 119.99631 * 118.20935 * 12 11 10 22 22 C 1.43198 * 119.99617 * 184.50038 * 21 12 11 23 23 N 9.49657 * 115.91985 * 61.51176 * 4 1 2 24 24 C 1.43197 * 120.00067 * 4.49622 * 21 12 11 25 25 N 9.70355 * 156.71940 * 258.54475 * 2 1 3 26 26 N 1.32395 * 120.58647 * 0.02562 * 10 9 8 27 27 C 1.31941 * 121.63449 * 359.97438 * 26 10 9 28 28 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47213 * 300.00147 * 1 2 3 30 30 H 1.09006 * 109.47401 * 60.00062 * 1 2 3 31 31 H 1.09000 * 109.47213 * 239.99853 * 2 1 3 32 32 H 1.08994 * 109.47055 * 119.99812 * 2 1 3 33 33 H 0.97002 * 119.99924 * 344.99575 * 3 2 1 34 34 H 1.07997 * 120.74455 * 0.02562 * 8 7 4 35 35 H 1.08001 * 120.45628 * 179.72752 * 9 8 7 36 36 H 0.96995 * 119.99747 * 176.81984 * 11 10 9 37 37 H 0.96998 * 120.00097 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.57275 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7001 0.3712 5 8 3.8848 0.9834 1.5647 6 8 3.7651 3.1064 0.2511 7 6 4.5894 0.9737 -0.8933 8 6 4.9257 1.7025 -2.0265 9 6 5.7033 1.0947 -2.9955 10 6 6.1203 -0.2185 -2.8029 11 7 6.9026 -0.8424 -3.7699 12 6 7.2075 -0.1802 -4.9461 13 6 6.1898 0.2062 -5.8099 14 1 6.3389 1.0382 -6.4822 15 6 4.9639 -0.4873 -5.8087 16 7 3.9135 0.0448 -6.3675 17 14 4.8434 -2.1698 -5.0060 18 1 4.5158 -2.0092 -3.5665 19 1 3.7766 -2.9603 -5.6712 20 1 6.1417 -2.8774 -5.1424 21 6 8.5522 0.1027 -5.2686 22 6 8.8619 0.8716 -6.4362 23 7 9.1106 1.4826 -7.3602 24 6 9.6066 -0.3791 -4.4280 25 7 10.4435 -0.7617 -3.7588 26 7 5.7786 -0.8802 -1.7082 27 6 5.0379 -0.3260 -0.7675 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4149 2.1090 -0.2175 34 1 4.5876 2.7210 -2.1484 35 1 5.9798 1.6309 -3.8913 36 1 7.2342 -1.7414 -3.6195 37 1 3.0692 -0.4326 -6.3664 38 1 4.7791 -0.8964 0.1123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:29 Heat of formation + Delta-G solvation = 4.925793 kcal Electronic energy + Delta-G solvation = -27541.535479 eV Core-core repulsion = 23510.448636 eV Total energy + Delta-G solvation = -4031.086843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68646 -39.17058 -38.31944 -37.13907 -36.92864 -36.71571 -36.63482 -35.70107 -33.81125 -32.75872 -30.56622 -30.53464 -29.14644 -25.09712 -24.72089 -23.67844 -22.92312 -21.02708 -20.57775 -19.39857 -19.22558 -18.83185 -18.32726 -18.02146 -17.70091 -17.14703 -16.57908 -15.72039 -15.65340 -15.55647 -15.52848 -14.91174 -14.72436 -14.58143 -14.46468 -14.34696 -14.14484 -14.05695 -13.63393 -13.52323 -13.48339 -13.21914 -13.18494 -13.11211 -12.92678 -12.85306 -12.70156 -12.52829 -12.42536 -12.34429 -12.15555 -11.86011 -11.29594 -11.01734 -10.75766 -10.38365 -10.16745 -9.49429 -9.09358 -7.26746 -0.59917 -0.28879 0.22803 0.29934 1.20829 1.33829 1.37927 1.76135 1.90678 1.98238 2.08089 2.14930 2.41007 2.45624 2.57049 2.83731 3.26260 3.31613 3.46174 3.61427 3.79539 3.93382 4.11054 4.17026 4.33207 4.34600 4.54604 4.61051 4.70624 4.72117 4.75806 4.85888 5.15210 5.15566 5.20370 5.37966 5.40770 5.53144 5.67462 5.88800 6.15355 6.20806 6.23913 6.86941 7.06311 7.24170 7.49123 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003889 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.663431 B = 7198.371606 C = 7999.931225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 N -1.106 6.106 4 S 2.734 3.266 5 O -0.980 6.980 6 O -0.987 6.987 7 C -0.787 4.787 8 C 0.054 3.946 9 C -0.237 4.237 10 C 0.439 3.561 11 N -0.665 5.665 12 C 0.341 3.659 13 C -0.342 4.342 14 H 0.108 0.892 15 C 0.058 3.942 16 N -0.726 5.726 17 Si 0.946 3.054 18 H -0.237 1.237 19 H -0.272 1.272 20 H -0.250 1.250 21 C -0.301 4.301 22 C 0.328 3.672 23 N -0.546 5.546 24 C 0.313 3.687 25 N -0.546 5.546 26 N -0.558 5.558 27 C 0.236 3.764 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.428 0.572 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.413 0.587 37 H 0.320 0.680 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.480 -2.820 10.901 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.870 5.870 4 S 2.822 3.178 5 O -0.970 6.970 6 O -0.977 6.977 7 C -0.879 4.879 8 C 0.028 3.972 9 C -0.262 4.262 10 C 0.206 3.794 11 N -0.293 5.293 12 C 0.238 3.762 13 C -0.369 4.369 14 H 0.126 0.874 15 C -0.174 4.174 16 N -0.344 5.344 17 Si 0.767 3.233 18 H -0.161 1.161 19 H -0.199 1.199 20 H -0.174 1.174 21 C -0.319 4.319 22 C 0.020 3.980 23 N -0.229 5.229 24 C 0.006 3.994 25 N -0.229 5.229 26 N -0.275 5.275 27 C 0.075 3.925 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.185 0.815 35 H 0.168 0.832 36 H 0.253 0.747 37 H 0.133 0.867 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.330 -2.862 11.069 19.124 hybrid contribution -0.406 -0.151 -0.994 1.084 sum -15.736 -3.012 10.076 18.927 Atomic orbital electron populations 1.21958 0.92559 1.03911 1.03159 1.21523 0.97811 0.80610 1.02706 1.55319 1.27488 1.15861 1.88367 1.00554 0.72425 0.72016 0.72797 1.93543 1.84668 1.74939 1.43832 1.93548 1.85972 1.30883 1.87251 1.31562 1.27290 1.08576 1.20456 1.21257 0.88319 0.99231 0.88432 1.21885 1.05567 0.95048 1.03707 1.18514 0.85746 0.88781 0.86364 1.42084 1.52716 1.19028 1.15493 1.16560 0.89845 0.86500 0.83277 1.20105 0.94868 1.10875 1.11051 0.87439 1.27104 0.93404 1.03411 0.93512 1.69361 1.02118 1.38744 1.24136 0.85679 0.80526 0.76371 0.80710 1.16077 1.19874 1.17415 1.12696 0.87188 1.31385 1.00644 1.24721 0.91625 0.90603 0.91006 1.81049 1.09304 1.17976 1.14566 1.25279 0.91902 0.90851 0.91352 1.81175 1.10252 1.17993 1.13460 1.67240 1.19008 1.38432 1.02827 1.22603 0.85565 0.90033 0.94345 0.89854 0.91363 0.91514 0.91425 0.89699 0.73493 0.81518 0.83188 0.74721 0.86665 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.05 71.98 0.72 -0.56 16 2 C 0.10 1.18 6.94 86.38 0.60 1.78 16 3 N -1.11 -15.66 6.00 -187.50 -1.12 -16.79 16 4 S 2.73 58.48 5.75 -56.49 -0.32 58.16 16 5 O -0.98 -24.96 16.77 -128.00 -2.15 -27.11 16 6 O -0.99 -26.38 17.35 -128.00 -2.22 -28.60 16 7 C -0.79 -19.41 5.96 22.38 0.13 -19.27 16 8 C 0.05 1.45 9.64 22.44 0.22 1.66 16 9 C -0.24 -7.54 8.76 22.50 0.20 -7.35 16 10 C 0.44 14.56 5.29 133.01 0.70 15.26 16 11 N -0.66 -22.85 2.25 -184.71 -0.42 -23.26 16 12 C 0.34 12.69 4.46 39.00 0.17 12.86 16 13 C -0.34 -13.04 7.17 23.08 0.17 -12.88 16 14 H 0.11 4.55 7.29 -2.91 -0.02 4.53 16 15 C 0.06 2.07 5.15 85.55 0.44 2.51 16 16 N -0.73 -26.03 13.90 21.98 0.31 -25.73 16 17 Si 0.95 29.04 24.42 68.60 1.67 30.71 16 18 H -0.24 -7.11 5.79 99.48 0.58 -6.53 16 19 H -0.27 -8.06 7.11 99.48 0.71 -7.35 16 20 H -0.25 -7.82 6.83 99.48 0.68 -7.15 16 21 C -0.30 -12.22 5.88 -20.07 -0.12 -12.33 16 22 C 0.33 14.34 13.95 88.34 1.23 15.57 16 23 N -0.55 -25.26 18.53 18.99 0.35 -24.91 16 24 C 0.31 13.30 14.83 88.31 1.31 14.61 16 25 N -0.55 -24.46 18.55 19.03 0.35 -24.10 16 26 N -0.56 -17.30 9.79 -193.15 -1.89 -19.19 16 27 C 0.24 6.09 10.68 84.63 0.90 7.00 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.97 7.75 -2.39 -0.02 0.95 16 33 H 0.43 4.39 8.65 -96.74 -0.84 3.55 16 34 H 0.17 3.74 7.70 -2.91 -0.02 3.72 16 35 H 0.15 5.02 6.06 -2.91 -0.02 5.00 16 36 H 0.41 13.56 7.97 -92.71 -0.74 12.82 16 37 H 0.32 9.97 8.29 -92.71 -0.77 9.20 16 38 H 0.20 3.80 7.62 -2.91 -0.02 3.78 16 Total: -1.00 -57.87 355.70 0.68 -57.19 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.56 Total: 24.77 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 6.68 Total: 18.86 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -2.42 Total: -133.98 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -4.37 Total: -55.71 kcal Atomic # 14 Polarization: 29.04 SS G_CDS: 1.67 Total: 30.71 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.32 Total: 58.16 kcal Total: -57.87 0.68 -57.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.113 kcal (2) G-P(sol) polarization free energy of solvation -57.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds