Wall clock time and date at job start Wed Apr 1 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34636 * 116.99747 * 2 1 4 4 O 1.21397 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.48383 * 120.00134 * 180.27946 * 3 2 1 6 6 C 1.39511 * 120.50318 * 174.47619 * 5 3 2 7 7 C 1.39045 * 118.39874 * 179.97438 * 6 5 3 8 8 Cl 1.73608 * 120.38999 * 179.97438 * 7 6 5 9 9 N 1.32204 * 119.21430 * 359.97438 * 7 6 5 10 10 C 1.32615 * 120.94179 * 359.97438 * 9 7 6 11 11 N 1.38469 * 119.12252 * 179.97438 * 10 9 7 12 12 C 1.36977 * 119.99815 * 182.53723 * 11 10 9 13 13 H 1.08000 * 120.00153 * 322.38793 * 12 11 10 14 14 C 1.38841 * 119.99913 * 142.38424 * 12 11 10 15 15 N 1.31543 * 119.99838 * 158.43888 * 14 12 11 16 16 Si 1.86796 * 120.00052 * 338.43909 * 14 12 11 17 17 H 1.48503 * 109.47138 * 95.30841 * 16 14 12 18 18 H 1.48495 * 109.47004 * 215.31044 * 16 14 12 19 19 H 1.48504 * 109.46990 * 335.31349 * 16 14 12 20 20 C 1.46495 * 119.99829 * 2.53641 * 11 10 9 21 21 C 1.50705 * 109.47151 * 90.00425 * 20 11 10 22 22 C 1.38243 * 119.99748 * 269.72519 * 21 20 11 23 23 C 1.38237 * 119.99427 * 179.76721 * 22 21 20 24 24 C 1.38227 * 120.00320 * 0.50173 * 23 22 21 25 25 C 1.38240 * 120.00203 * 359.75314 * 24 23 22 26 26 C 1.38235 * 120.00099 * 89.99681 * 21 20 11 27 27 N 1.32304 * 121.75022 * 359.73828 * 10 9 7 28 28 H 1.09002 * 109.46664 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47113 * 300.00280 * 1 2 3 30 30 H 1.08998 * 109.47510 * 60.00368 * 1 2 3 31 31 H 1.07990 * 120.79803 * 359.94655 * 6 5 3 32 32 H 0.96995 * 119.99898 * 180.02562 * 15 14 12 33 33 H 1.09005 * 109.47152 * 209.99745 * 20 11 10 34 34 H 1.08999 * 109.47886 * 330.00028 * 20 11 10 35 35 H 1.08000 * 119.99652 * 359.97438 * 22 21 20 36 36 H 1.07997 * 119.99112 * 180.23273 * 23 22 21 37 37 H 1.08000 * 120.00499 * 179.72645 * 24 23 22 38 38 H 1.07995 * 120.00318 * 179.97438 * 25 24 23 39 39 H 1.08000 * 119.99937 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4020 2.2177 -0.0005 5 6 3.5450 1.2774 -0.0063 6 6 4.1890 2.5096 -0.1220 7 6 5.5792 2.5317 -0.1226 8 17 6.4336 4.0363 -0.2646 9 7 6.2427 1.3934 -0.0137 10 6 5.6011 0.2380 0.0959 11 7 6.3337 -0.9318 0.2072 12 6 5.6904 -2.1395 0.2690 13 1 4.7616 -2.2294 0.8128 14 6 6.2323 -3.2480 -0.3675 15 7 5.8885 -4.4590 0.0142 16 14 7.4496 -3.0198 -1.7659 17 1 8.8341 -3.0985 -1.2348 18 1 7.2463 -4.0871 -2.7782 19 1 7.2360 -1.6923 -2.3964 20 6 7.7968 -0.8776 0.2590 21 6 8.2446 -0.7580 1.6930 22 6 8.4144 0.4903 2.2622 23 6 8.8205 0.6000 3.5790 24 6 9.0669 -0.5384 4.3234 25 6 8.9023 -1.7866 3.7526 26 6 8.4911 -1.8964 2.4374 27 7 4.2797 0.1737 0.1062 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.6213 3.4241 -0.2096 32 1 6.2674 -5.2334 -0.4303 33 1 8.2097 -1.7879 -0.1758 34 1 8.1486 -0.0136 -0.3048 35 1 8.2264 1.3798 1.6791 36 1 8.9495 1.5751 4.0248 37 1 9.3885 -0.4527 5.3508 38 1 9.0952 -2.6760 4.3340 39 1 8.3631 -2.8715 1.9912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:20 Heat of formation + Delta-G solvation = 22.379067 kcal Electronic energy + Delta-G solvation = -27843.347285 eV Core-core repulsion = 23778.680815 eV Total energy + Delta-G solvation = -4064.666470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.69940 -39.78357 -38.85396 -36.82048 -36.39064 -36.11466 -33.22200 -32.52681 -31.69720 -30.47586 -29.93114 -27.94140 -26.34882 -25.17333 -24.78794 -22.29964 -22.11457 -21.35091 -20.53699 -18.24864 -18.13851 -17.07683 -16.51694 -16.29737 -16.20595 -15.86637 -15.41337 -14.99054 -14.80983 -14.56912 -14.52912 -14.23545 -13.43085 -13.33251 -13.09069 -13.07408 -12.97041 -12.79918 -12.17853 -12.03629 -11.96994 -11.84996 -11.32296 -11.20426 -10.96461 -10.69687 -10.66550 -10.63326 -10.40279 -10.40104 -10.24006 -10.02142 -9.62891 -9.06972 -8.67962 -8.49981 -8.38007 -7.52563 -6.74816 -4.17877 0.90847 1.53281 1.71112 1.82589 1.89414 2.74218 2.82200 2.88975 3.06285 3.10505 3.57580 3.87993 4.25715 4.29320 4.61144 4.73511 5.18628 5.20993 5.22999 5.24687 5.27733 5.29277 5.36319 5.56068 5.58868 5.64981 5.70923 5.84773 5.91720 6.02474 6.09580 6.37281 6.38365 6.47062 6.52537 6.84586 6.87972 7.09149 7.11066 7.31153 7.40800 7.80473 7.90286 8.16831 8.54758 8.90083 9.20205 10.33263 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008083 B = 0.005062 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.058520 B = 5530.052475 C = 7122.857108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.533 3.467 4 O -0.500 6.500 5 C 0.203 3.797 6 C -0.283 4.283 7 C 0.278 3.722 8 Cl -0.036 7.036 9 N -0.569 5.569 10 C 0.522 3.478 11 N -0.393 5.393 12 C -0.293 4.293 13 H 0.122 0.878 14 C 0.066 3.934 15 N -0.836 5.836 16 Si 0.868 3.132 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.259 1.259 20 C 0.144 3.856 21 C -0.090 4.090 22 C -0.098 4.098 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.087 4.087 27 N -0.498 5.498 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.281 0.719 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 7.887 2.054 8.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.239 6.239 3 C 0.375 3.625 4 O -0.387 6.387 5 C 0.049 3.951 6 C -0.315 4.315 7 C 0.097 3.903 8 Cl -0.007 7.007 9 N -0.298 5.298 10 C 0.171 3.829 11 N -0.086 5.086 12 C -0.422 4.422 13 H 0.139 0.861 14 C -0.144 4.144 15 N -0.468 5.468 16 Si 0.695 3.305 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.183 1.183 20 C 0.021 3.979 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.105 4.105 27 N -0.224 5.224 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.496 6.796 2.127 7.276 hybrid contribution -0.026 0.868 -0.750 1.147 sum 1.470 7.664 1.377 7.924 Atomic orbital electron populations 1.23333 0.76493 1.03944 1.02252 1.86778 1.22797 1.31428 1.82861 1.20840 0.87730 0.81647 0.72310 1.90801 1.65840 1.36292 1.45730 1.19790 0.90398 0.89144 0.95790 1.21509 0.93001 0.99111 1.17923 1.21224 0.88081 0.87607 0.93351 1.98380 1.78814 1.27847 1.95705 1.66950 1.41394 0.97315 1.24110 1.19019 0.84406 0.85435 0.94039 1.42467 1.03052 1.02217 1.60872 1.19278 1.09818 0.81378 1.31718 0.86109 1.25375 0.97467 0.94732 0.96809 1.69767 1.41325 0.97953 1.37756 0.87063 0.80694 0.79647 0.83126 1.19429 1.20636 1.18310 1.20787 0.80807 1.02949 0.93318 1.20132 0.98978 0.93352 0.96634 1.21205 0.97875 0.97442 0.95100 1.21049 1.01301 0.98131 0.94576 1.21060 1.00970 0.92851 0.99332 1.21080 1.00947 0.97258 0.95353 1.21173 0.96632 0.98704 0.94014 1.67919 1.06052 1.29531 1.18871 0.87825 0.91920 0.91932 0.83353 0.90835 0.90207 0.89088 0.85512 0.86666 0.86767 0.86450 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.32 -5.69 10.42 -40.32 -0.42 -6.11 16 3 C 0.53 9.76 7.96 34.91 0.28 10.04 16 4 O -0.50 -9.09 16.22 -19.19 -0.31 -9.40 16 5 C 0.20 4.03 6.79 -82.68 -0.56 3.47 16 6 C -0.28 -5.02 9.52 -38.81 -0.37 -5.39 16 7 C 0.28 4.97 7.34 -17.09 -0.13 4.85 16 8 Cl -0.04 -0.52 29.15 -51.86 -1.51 -2.03 16 9 N -0.57 -11.45 8.47 -11.00 -0.09 -11.54 16 10 C 0.52 11.72 8.13 -322.80 -2.62 9.10 16 11 N -0.39 -9.05 2.25 -118.36 -0.27 -9.31 16 12 C -0.29 -7.43 9.37 -15.03 -0.14 -7.57 16 13 H 0.12 3.41 7.83 -52.49 -0.41 3.00 16 14 C 0.07 1.64 5.32 -17.45 -0.09 1.55 16 15 N -0.84 -21.54 13.96 55.49 0.77 -20.76 16 16 Si 0.87 18.95 24.99 -169.99 -4.25 14.70 16 17 H -0.27 -5.45 6.68 56.52 0.38 -5.08 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.14 2.94 4.36 -5.19 -0.02 2.92 16 21 C -0.09 -1.70 5.46 -104.62 -0.57 -2.27 16 22 C -0.10 -1.69 9.70 -39.58 -0.38 -2.07 16 23 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 26 C -0.09 -1.59 9.70 -39.58 -0.38 -1.97 16 27 N -0.50 -11.24 9.22 -10.48 -0.10 -11.34 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.15 2.33 7.74 -52.49 -0.41 1.93 16 32 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.08 1.66 3.15 -51.93 -0.16 1.49 16 34 H 0.09 1.76 7.23 -51.93 -0.38 1.39 16 35 H 0.13 2.18 7.45 -52.49 -0.39 1.79 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -27.56 358.28 -9.76 -37.33 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.87 Total: 5.99 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -5.12 Total: 7.09 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.32 Total: -52.96 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.73 Total: -15.51 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.25 Total: 14.70 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.56 -9.76 -37.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.707 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds