Wall clock time and date at job start Wed Apr 1 2020 04:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34636 * 116.99747 * 2 1 4 4 O 1.21397 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.48383 * 120.00134 * 180.27946 * 3 2 1 6 6 C 1.39511 * 120.50318 * 174.47619 * 5 3 2 7 7 C 1.39045 * 118.39874 * 179.97438 * 6 5 3 8 8 Cl 1.73608 * 120.38999 * 179.97438 * 7 6 5 9 9 N 1.32204 * 119.21430 * 359.97438 * 7 6 5 10 10 C 1.32615 * 120.94179 * 359.97438 * 9 7 6 11 11 N 1.38469 * 119.12252 * 179.97438 * 10 9 7 12 12 C 1.36977 * 119.99815 * 182.53723 * 11 10 9 13 13 H 1.08000 * 120.00153 * 322.38793 * 12 11 10 14 14 C 1.38841 * 119.99913 * 142.38424 * 12 11 10 15 15 N 1.31543 * 119.99838 * 158.43888 * 14 12 11 16 16 Si 1.86796 * 120.00052 * 338.43909 * 14 12 11 17 17 H 1.48503 * 109.47138 * 95.30841 * 16 14 12 18 18 H 1.48495 * 109.47004 * 215.31044 * 16 14 12 19 19 H 1.48504 * 109.46990 * 335.31349 * 16 14 12 20 20 C 1.46495 * 119.99829 * 2.53641 * 11 10 9 21 21 C 1.50705 * 109.47151 * 90.00425 * 20 11 10 22 22 C 1.38243 * 119.99748 * 269.72519 * 21 20 11 23 23 C 1.38237 * 119.99427 * 179.76721 * 22 21 20 24 24 C 1.38227 * 120.00320 * 0.50173 * 23 22 21 25 25 C 1.38240 * 120.00203 * 359.75314 * 24 23 22 26 26 C 1.38235 * 120.00099 * 89.99681 * 21 20 11 27 27 N 1.32304 * 121.75022 * 359.73828 * 10 9 7 28 28 H 1.09002 * 109.46664 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47113 * 300.00280 * 1 2 3 30 30 H 1.08998 * 109.47510 * 60.00368 * 1 2 3 31 31 H 1.07990 * 120.79803 * 359.94655 * 6 5 3 32 32 H 0.96995 * 119.99898 * 180.02562 * 15 14 12 33 33 H 1.09005 * 109.47152 * 209.99745 * 20 11 10 34 34 H 1.08999 * 109.47886 * 330.00028 * 20 11 10 35 35 H 1.08000 * 119.99652 * 359.97438 * 22 21 20 36 36 H 1.07997 * 119.99112 * 180.23273 * 23 22 21 37 37 H 1.08000 * 120.00499 * 179.72645 * 24 23 22 38 38 H 1.07995 * 120.00318 * 179.97438 * 25 24 23 39 39 H 1.08000 * 119.99937 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4020 2.2177 -0.0005 5 6 3.5450 1.2774 -0.0063 6 6 4.1890 2.5096 -0.1220 7 6 5.5792 2.5317 -0.1226 8 17 6.4336 4.0363 -0.2646 9 7 6.2427 1.3934 -0.0137 10 6 5.6011 0.2380 0.0959 11 7 6.3337 -0.9318 0.2072 12 6 5.6904 -2.1395 0.2690 13 1 4.7616 -2.2294 0.8128 14 6 6.2323 -3.2480 -0.3675 15 7 5.8885 -4.4590 0.0142 16 14 7.4496 -3.0198 -1.7659 17 1 8.8341 -3.0985 -1.2348 18 1 7.2463 -4.0871 -2.7782 19 1 7.2360 -1.6923 -2.3964 20 6 7.7968 -0.8776 0.2590 21 6 8.2446 -0.7580 1.6930 22 6 8.4144 0.4903 2.2622 23 6 8.8205 0.6000 3.5790 24 6 9.0669 -0.5384 4.3234 25 6 8.9023 -1.7866 3.7526 26 6 8.4911 -1.8964 2.4374 27 7 4.2797 0.1737 0.1062 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.6213 3.4241 -0.2096 32 1 6.2674 -5.2334 -0.4303 33 1 8.2097 -1.7879 -0.1758 34 1 8.1486 -0.0136 -0.3048 35 1 8.2264 1.3798 1.6791 36 1 8.9495 1.5751 4.0248 37 1 9.3885 -0.4527 5.3508 38 1 9.0952 -2.6760 4.3340 39 1 8.3631 -2.8715 1.9912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:19 Heat of formation + Delta-G solvation = 10.602615 kcal Electronic energy + Delta-G solvation = -27843.857950 eV Core-core repulsion = 23778.680815 eV Total energy + Delta-G solvation = -4065.177135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25073 -41.23273 -40.18759 -38.29996 -37.77326 -37.55502 -34.85136 -34.29406 -33.12193 -31.74494 -31.47869 -29.11586 -27.87735 -26.84813 -26.23454 -23.89375 -23.38762 -22.71304 -21.99957 -19.85021 -19.68262 -18.64043 -17.95923 -17.79431 -17.56326 -17.35192 -16.98312 -16.47294 -16.30523 -15.96404 -15.91383 -15.73866 -14.90747 -14.75742 -14.64327 -14.42795 -14.31391 -14.22406 -13.59962 -13.46211 -13.35632 -13.04571 -12.94834 -12.52769 -12.47306 -12.13827 -12.08580 -12.05991 -11.93632 -11.84809 -11.73220 -11.57940 -11.19870 -10.82616 -10.27235 -9.76950 -9.68650 -9.20812 -8.60055 -6.08888 -0.62929 0.00045 0.39069 0.47837 0.55318 1.13202 1.24093 1.32368 1.34836 1.49844 2.00810 2.10227 2.60901 2.88923 3.03932 3.16278 3.59780 3.77952 3.84611 3.91391 4.16807 4.22302 4.22959 4.26005 4.31587 4.33654 4.33741 4.48128 4.68257 4.71702 4.77318 4.94105 5.09031 5.11207 5.20676 5.38184 5.60303 5.63287 5.67435 5.79132 6.07195 6.16130 6.29278 6.46085 6.81150 7.08813 7.48388 8.53444 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008083 B = 0.005062 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.058520 B = 5530.052475 C = 7122.857108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.535 3.465 4 O -0.500 6.500 5 C 0.187 3.813 6 C -0.256 4.256 7 C 0.271 3.729 8 Cl 0.007 6.993 9 N -0.566 5.566 10 C 0.524 3.476 11 N -0.413 5.413 12 C -0.299 4.299 13 H 0.076 0.924 14 C 0.034 3.966 15 N -0.881 5.881 16 Si 0.919 3.081 17 H -0.247 1.247 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.148 3.852 21 C -0.110 4.110 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.110 4.110 27 N -0.536 5.536 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.177 0.823 32 H 0.284 0.716 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.139 0.861 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 10.826 2.760 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C 0.377 3.623 4 O -0.387 6.387 5 C 0.035 3.965 6 C -0.287 4.287 7 C 0.091 3.909 8 Cl 0.036 6.964 9 N -0.295 5.295 10 C 0.172 3.828 11 N -0.110 5.110 12 C -0.428 4.428 13 H 0.093 0.907 14 C -0.172 4.172 15 N -0.516 5.516 16 Si 0.744 3.256 17 H -0.172 1.172 18 H -0.206 1.206 19 H -0.193 1.193 20 C 0.026 3.974 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.129 4.129 27 N -0.263 5.263 28 H 0.145 0.855 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.194 9.798 2.832 10.433 hybrid contribution -0.414 0.335 -0.901 1.046 sum 1.780 10.133 1.931 10.468 Atomic orbital electron populations 1.23723 0.73611 1.05976 1.03414 1.86754 1.25750 1.31146 1.82456 1.20607 0.87232 0.81984 0.72445 1.90788 1.65680 1.36207 1.46025 1.20251 0.91401 0.89296 0.95506 1.21907 0.93232 0.99374 1.14228 1.21635 0.88698 0.88415 0.92129 1.98399 1.78033 1.24665 1.95325 1.67061 1.41355 0.97317 1.23728 1.19222 0.84617 0.86047 0.92901 1.42396 1.03782 1.01541 1.63246 1.18728 1.08915 0.82970 1.32142 0.90668 1.25797 0.99031 0.94188 0.98150 1.69835 1.43765 0.98624 1.39400 0.86262 0.80153 0.78693 0.80482 1.17230 1.20612 1.19279 1.20774 0.79422 1.02491 0.94686 1.20116 1.00429 0.94401 0.96164 1.21261 0.98595 0.96507 0.96284 1.21430 0.99753 0.99922 0.93601 1.21483 0.99252 0.91812 1.00861 1.21374 1.00033 0.99077 0.94338 1.21159 0.98482 0.97730 0.95536 1.67929 1.06556 1.31247 1.20600 0.85529 0.90819 0.90657 0.80585 0.90580 0.91210 0.88537 0.85666 0.83584 0.83010 0.84307 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.35 -12.16 10.42 -55.45 -0.58 -12.73 16 3 C 0.54 19.25 7.96 70.52 0.56 19.81 16 4 O -0.50 -17.28 16.22 20.17 0.33 -16.96 16 5 C 0.19 7.33 6.79 41.97 0.28 7.61 16 6 C -0.26 -8.55 9.52 22.77 0.22 -8.33 16 7 C 0.27 9.12 7.34 84.83 0.62 9.74 16 8 Cl 0.01 0.19 29.15 -2.72 -0.08 0.11 16 9 N -0.57 -22.33 8.47 -188.71 -1.60 -23.93 16 10 C 0.52 23.98 8.13 261.48 2.13 26.10 16 11 N -0.41 -19.76 2.25 -528.38 -1.19 -20.95 16 12 C -0.30 -16.10 9.37 84.03 0.79 -15.31 16 13 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 14 C 0.03 1.80 5.32 84.88 0.45 2.25 16 15 N -0.88 -48.18 13.96 21.65 0.30 -47.88 16 16 Si 0.92 40.58 24.99 68.60 1.71 42.29 16 17 H -0.25 -9.92 6.68 99.48 0.66 -9.26 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 C 0.15 6.21 4.36 85.64 0.37 6.59 16 21 C -0.11 -4.22 5.46 -19.86 -0.11 -4.33 16 22 C -0.11 -3.62 9.70 22.27 0.22 -3.40 16 23 C -0.13 -3.57 10.05 22.27 0.22 -3.34 16 24 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 25 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 26 C -0.11 -4.14 9.70 22.27 0.22 -3.93 16 27 N -0.54 -24.83 9.22 -187.08 -1.72 -26.55 16 28 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.18 4.89 7.74 -2.92 -0.02 4.87 16 32 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.07 2.99 3.15 -2.38 -0.01 2.98 16 34 H 0.10 3.78 7.23 -2.39 -0.02 3.76 16 35 H 0.13 4.15 7.45 -2.91 -0.02 4.12 16 36 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -63.00 358.28 5.85 -57.14 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.06 Total: 20.75 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 7.62 Total: 28.70 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.21 Total: -119.31 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.25 Total: -29.69 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.71 Total: 42.29 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.08 Total: 0.11 kcal Total: -63.00 5.85 -57.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.747 kcal (2) G-P(sol) polarization free energy of solvation -62.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds