Wall clock time and date at job start Wed Apr 1 2020 04:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00509 * 2 1 4 4 S 1.65606 * 119.99441 * 180.02562 * 2 1 3 5 5 O 1.42097 * 109.47366 * 0.57360 * 4 2 1 6 6 N 1.49354 * 109.46904 * 120.57533 * 4 2 1 7 7 S 1.65594 * 120.00274 * 294.62388 * 6 4 2 8 8 O 1.42098 * 106.40307 * 291.47952 * 7 6 4 9 9 O 1.42098 * 106.39898 * 64.39336 * 7 6 4 10 10 N 1.65597 * 107.22012 * 177.93447 * 7 6 4 11 11 C 1.46494 * 119.99814 * 65.00089 * 10 7 6 12 12 C 1.50707 * 109.46934 * 165.00093 * 11 10 7 13 13 H 1.07994 * 120.00197 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99704 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99623 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47475 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47183 * 120.00127 * 16 14 12 19 19 H 1.48502 * 109.47205 * 239.99726 * 16 14 12 20 20 C 1.76199 * 109.46905 * 240.57354 * 4 2 1 21 21 C 1.38238 * 120.00241 * 269.73281 * 20 4 2 22 22 C 1.38235 * 119.99949 * 179.80902 * 21 20 4 23 23 C 1.38236 * 120.00011 * 0.39587 * 22 21 20 24 24 C 1.38235 * 120.00086 * 359.85436 * 23 22 21 25 25 C 1.38231 * 119.99952 * 359.95486 * 24 23 22 26 26 H 1.09008 * 109.46983 * 86.65151 * 1 2 3 27 27 H 1.09006 * 109.46943 * 326.66081 * 1 2 3 28 28 H 1.08989 * 109.47510 * 206.65781 * 1 2 3 29 29 H 1.09003 * 109.46484 * 89.99768 * 3 2 1 30 30 H 1.08995 * 109.47243 * 209.99901 * 3 2 1 31 31 H 1.09000 * 109.46857 * 330.00370 * 3 2 1 32 32 H 0.97004 * 120.00051 * 245.00591 * 10 7 6 33 33 H 1.09003 * 109.47161 * 284.99910 * 11 10 7 34 34 H 1.09002 * 109.47305 * 45.00049 * 11 10 7 35 35 H 0.96998 * 120.00172 * 180.02562 * 15 14 12 36 36 H 1.07999 * 119.99485 * 359.97438 * 21 20 4 37 37 H 1.08003 * 119.99601 * 180.22631 * 22 21 20 38 38 H 1.07999 * 119.99574 * 179.83574 * 23 22 21 39 39 H 1.07994 * 120.00253 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00159 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2929 -1.4343 -0.0006 5 8 1.3695 -2.5142 -0.0145 6 7 3.1621 -1.5068 -1.2130 7 16 2.4781 -1.5692 -2.7198 8 8 1.8379 -2.8340 -2.8178 9 8 1.7952 -0.3364 -2.9017 10 7 3.7158 -1.5849 -3.8198 11 6 4.6390 -2.7213 -3.8674 12 6 5.4220 -2.6789 -5.1544 13 1 5.2489 -1.8851 -5.8658 14 6 6.3587 -3.6542 -5.4239 15 7 6.5691 -4.6211 -4.5577 16 14 7.3297 -3.6011 -7.0187 17 1 6.9086 -2.4210 -7.8157 18 1 8.7794 -3.5006 -6.7125 19 1 7.0728 -4.8401 -7.7961 20 6 3.2934 -1.5355 1.4462 21 6 4.5907 -1.0587 1.4243 22 6 5.3743 -1.1346 2.5606 23 6 4.8632 -1.6947 3.7165 24 6 3.5676 -2.1762 3.7369 25 6 2.7827 -2.0967 2.6018 26 1 -0.3633 0.0600 -1.0260 27 1 -0.3633 0.8586 0.5648 28 1 -0.3634 -0.9183 0.4610 29 1 2.3792 1.5832 1.0277 30 1 3.1500 1.1383 -0.5138 31 1 1.6085 2.0283 -0.5138 32 1 3.8295 -0.8416 -4.4326 33 1 5.3255 -2.6674 -3.0224 34 1 4.0731 -3.6516 -3.8169 35 1 7.2282 -5.3070 -4.7472 36 1 4.9912 -0.6246 0.5201 37 1 6.3867 -0.7587 2.5445 38 1 5.4763 -1.7563 4.6034 39 1 3.1684 -2.6141 4.6398 40 1 1.7704 -2.4725 2.6179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189772544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:34 Heat of formation + Delta-G solvation = -37.339537 kcal Electronic energy + Delta-G solvation = -27019.878147 eV Core-core repulsion = 23090.109742 eV Total energy + Delta-G solvation = -3929.768405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.49810 -36.73544 -36.52684 -36.15598 -35.10929 -34.35996 -33.03570 -31.94810 -31.76300 -31.36860 -28.36408 -26.53664 -24.91651 -23.59960 -23.14640 -22.28064 -20.20981 -18.69246 -18.23330 -17.46224 -17.15469 -16.76632 -16.36616 -15.75134 -15.40932 -15.25007 -15.12348 -15.02263 -14.51240 -14.37960 -13.89728 -13.53878 -13.39190 -13.07458 -12.80575 -12.77616 -12.44197 -12.35689 -12.21931 -11.93071 -11.68358 -11.65260 -11.54672 -11.35924 -11.23962 -11.16598 -10.86080 -10.58589 -10.26767 -10.22641 -9.96058 -9.82722 -9.42742 -9.36769 -9.22879 -8.72965 -7.98589 -6.02149 -4.06153 -0.55816 0.36634 0.91277 1.54795 2.66670 3.13571 3.30867 3.33064 3.39917 3.44416 3.64191 3.99233 4.35242 4.46258 4.48257 4.52201 4.59961 4.91230 4.95375 5.01497 5.10929 5.21206 5.24847 5.32968 5.33904 5.49509 5.53345 5.58083 5.64883 5.65742 5.76059 5.82494 5.96497 6.15327 6.40445 6.73438 7.55536 7.64636 7.97377 8.06835 8.39221 8.99154 9.57180 11.08394 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.003932 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.736829 B = 7119.410702 C = 8434.954950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.007 6.007 3 C 0.087 3.913 4 S 2.638 3.362 5 O -0.950 6.950 6 N -1.515 6.515 7 S 2.785 3.215 8 O -0.980 6.980 9 O -1.015 7.015 10 N -1.086 6.086 11 C 0.250 3.750 12 C -0.527 4.527 13 H 0.065 0.935 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.583 4.583 21 C -0.008 4.008 22 C -0.135 4.135 23 C -0.060 4.060 24 C -0.137 4.137 25 C -0.024 4.024 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.406 0.594 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 12.937 21.122 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.839 5.839 3 C -0.059 4.059 4 S 2.740 3.260 5 O -0.929 6.929 6 N -1.539 6.539 7 S 2.791 3.209 8 O -0.962 6.962 9 O -0.998 6.998 10 N -0.851 5.851 11 C 0.126 3.874 12 C -0.567 4.567 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.684 4.684 21 C -0.027 4.027 22 C -0.154 4.154 23 C -0.078 4.078 24 C -0.156 4.156 25 C -0.045 4.045 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.240 0.760 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.171 0.829 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.469 11.994 20.933 25.255 hybrid contribution 1.140 0.399 -0.776 1.435 sum -6.330 12.393 20.157 24.494 Atomic orbital electron populations 1.21757 0.77237 1.03653 1.03780 1.57448 1.15158 1.20976 1.90344 1.21652 0.97296 0.85343 1.01570 1.03117 0.72123 0.73715 0.77051 1.93548 1.63745 1.49193 1.86385 1.76828 1.66906 1.80088 1.30108 1.01415 0.72574 0.73258 0.73699 1.93639 1.73509 1.43617 1.85462 1.93557 1.73557 1.46544 1.86156 1.55118 1.49764 1.31655 1.48554 1.19039 0.87652 0.82566 0.98109 1.21314 1.20683 1.11093 1.03565 0.91705 1.24983 0.96977 0.95138 0.97252 1.69977 1.34227 1.13384 1.35282 0.86384 0.79517 0.78058 0.83068 1.19651 1.20937 1.20881 1.28836 1.08858 1.16604 1.14071 1.21175 0.90606 0.91797 0.99141 1.21392 1.00675 1.00657 0.92713 1.21593 0.95063 0.92897 0.98240 1.21255 0.94658 1.01270 0.98393 1.20910 1.00218 0.92534 0.90817 0.91065 0.90094 0.90170 0.92434 0.90450 0.89433 0.76020 0.95383 0.94733 0.92675 0.82940 0.84260 0.84748 0.84470 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.57 59.85 0.63 1.49 16 2 N -1.01 -12.45 3.05 -129.20 -0.39 -12.84 16 3 C 0.09 0.80 10.74 59.85 0.64 1.44 16 4 S 2.64 42.55 3.80 -98.05 -0.37 42.17 16 5 O -0.95 -18.60 15.76 -41.51 -0.65 -19.26 16 6 N -1.52 -29.92 10.54 60.35 0.64 -29.28 16 7 S 2.78 64.28 5.79 -98.05 -0.57 63.71 16 8 O -0.98 -26.61 16.93 -61.53 -1.04 -27.65 16 9 O -1.02 -21.73 17.50 -57.18 -1.00 -22.73 16 10 N -1.09 -26.12 6.05 -11.65 -0.07 -26.19 16 11 C 0.25 7.06 6.00 -5.19 -0.03 7.03 16 12 C -0.53 -15.29 9.27 -34.43 -0.32 -15.61 16 13 H 0.06 1.78 7.65 -52.49 -0.40 1.38 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 16 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.58 -7.23 6.02 -39.58 -0.24 -7.47 16 21 C -0.01 -0.08 9.58 -39.58 -0.38 -0.46 16 22 C -0.14 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.06 -0.43 10.05 -39.58 -0.40 -0.83 16 24 C -0.14 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.02 -0.25 9.60 -39.58 -0.38 -0.63 16 26 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 27 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.08 0.80 7.26 -51.94 -0.38 0.42 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.74 7.99 -51.93 -0.41 0.32 16 31 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.41 8.75 8.54 -34.47 -0.29 8.45 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.03 1.07 7.75 -51.93 -0.40 0.67 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.15 1.60 7.85 -52.49 -0.41 1.19 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 1.22 7.92 -52.49 -0.42 0.81 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -40.11 368.98 -8.78 -48.89 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.23 Total: 3.61 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.36 Total: -16.42 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: 0.91 Total: -94.67 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -2.70 Total: -69.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 106.82 SS G_CDS: -0.94 Total: 105.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.11 -8.78 -48.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189772544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.555 kcal (2) G-P(sol) polarization free energy of solvation -40.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds