Wall clock time and date at job start Wed Apr 1 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41600 * 113.99643 * 2 1 4 4 C 1.46498 * 119.99924 * 275.33256 * 3 2 1 5 5 C 1.34775 * 120.00025 * 95.33631 * 3 2 1 6 6 O 1.21559 * 119.99824 * 176.36590 * 5 3 2 7 7 C 1.47790 * 119.99967 * 356.36216 * 5 3 2 8 8 C 1.39779 * 119.98101 * 202.79067 * 7 5 3 9 9 C 1.37575 * 120.03888 * 179.72106 * 8 7 5 10 10 C 1.39828 * 120.00932 * 0.51056 * 9 8 7 11 11 C 1.47714 * 120.01445 * 179.76525 * 10 9 8 12 12 N 1.32897 * 120.25085 * 123.77422 * 11 10 9 13 13 C 1.31947 * 120.08067 * 180.23113 * 12 11 10 14 14 C 1.39263 * 120.59438 * 359.77049 * 13 12 11 15 15 N 1.31579 * 120.50021 * 359.97438 * 14 13 12 16 16 C 1.33983 * 119.90057 * 359.97438 * 15 14 13 17 17 C 1.40780 * 120.28767 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00046 * 171.39227 * 17 16 15 19 19 C 1.40224 * 120.00002 * 351.39620 * 17 16 15 20 20 N 1.30645 * 119.99756 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99898 * 180.27558 * 19 17 16 22 22 H 1.48502 * 109.47109 * 179.72325 * 21 19 17 23 23 H 1.48506 * 109.47060 * 299.72247 * 21 19 17 24 24 H 1.48492 * 109.47410 * 59.72315 * 21 19 17 25 25 C 1.39893 * 119.96553 * 359.49086 * 10 9 8 26 26 Cl 1.73601 * 120.02182 * 180.27515 * 25 10 9 27 27 C 1.37802 * 119.96081 * 0.24987 * 25 10 9 28 28 H 1.08994 * 109.47209 * 300.00019 * 1 2 3 29 29 H 1.08995 * 109.47009 * 60.00581 * 1 2 3 30 30 H 1.09004 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47501 * 270.00504 * 4 3 2 32 32 H 1.09006 * 109.47308 * 29.99951 * 4 3 2 33 33 H 1.08997 * 109.47291 * 149.99929 * 4 3 2 34 34 H 1.07995 * 119.98248 * 0.02562 * 8 7 5 35 35 H 1.08000 * 119.99959 * 180.24929 * 9 8 7 36 36 H 1.08001 * 119.70308 * 179.74205 * 13 12 11 37 37 H 1.07995 * 119.75252 * 179.97438 * 14 13 12 38 38 H 0.97005 * 120.00210 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.00960 * 179.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1950 2.0107 -1.2632 5 6 2.3781 1.8651 1.1621 6 8 2.9325 2.9469 1.1569 7 6 2.1133 1.1766 2.4427 8 6 2.0440 1.9116 3.6297 9 6 1.7918 1.2726 4.8216 10 6 1.6152 -0.1142 4.8480 11 6 1.3496 -0.8010 6.1285 12 7 0.2646 -1.5550 6.2714 13 6 0.0283 -2.1633 7.4182 14 6 0.9104 -2.0281 8.4872 15 7 1.9943 -1.2914 8.3696 16 6 2.2543 -0.6656 7.2138 17 6 3.4113 0.1251 7.0791 18 1 3.6903 0.5133 6.1107 19 6 4.2013 0.4086 8.2023 20 7 3.8635 -0.0606 9.3739 21 14 5.7322 1.4643 8.0250 22 1 6.3827 1.6196 9.3509 23 1 6.6772 0.8116 7.0835 24 1 5.3540 2.8006 7.4996 25 6 1.6845 -0.8501 3.6603 26 17 1.4584 -2.5711 3.6904 27 6 1.9319 -0.2081 2.4664 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1769 1.7724 -1.6721 32 1 1.4236 1.7093 -1.9719 33 1 2.1260 3.0839 -1.0858 34 1 2.1836 2.9823 3.6104 35 1 1.7344 1.8416 5.7378 36 1 -0.8575 -2.7712 7.5289 37 1 0.7035 -2.5317 9.4199 38 1 4.4098 0.1358 10.1510 39 1 1.9859 -0.7755 1.5490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243520504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:49 Heat of formation + Delta-G solvation = 46.104898 kcal Electronic energy + Delta-G solvation = -27748.559226 eV Core-core repulsion = 23684.921586 eV Total energy + Delta-G solvation = -4063.637641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23872 -39.22664 -37.89085 -37.52235 -35.76120 -34.23360 -33.14972 -32.69944 -31.59442 -30.36629 -29.40872 -27.61050 -26.51581 -26.06109 -23.82258 -22.49922 -21.80393 -21.31288 -20.38209 -18.28967 -17.74819 -16.99708 -16.39094 -16.27127 -16.12349 -15.38673 -15.03271 -14.79226 -14.61200 -14.34919 -14.24252 -14.10673 -13.39359 -13.21992 -13.09453 -12.97049 -12.75299 -12.57095 -12.43962 -12.09937 -11.62264 -11.49770 -11.40751 -11.18031 -10.99378 -10.72977 -10.63072 -10.46652 -10.37786 -9.91360 -9.77926 -9.63873 -9.26855 -9.21346 -8.56468 -8.34174 -7.79033 -7.49184 -6.68572 -4.84243 1.02708 1.65484 1.71370 2.33890 2.70418 2.78662 2.95855 2.96941 2.99153 3.13430 3.74771 3.83353 4.08710 4.50493 4.84111 5.01049 5.04410 5.09893 5.18314 5.25825 5.30540 5.42733 5.46149 5.48826 5.59603 5.81836 5.83308 5.96560 6.13255 6.16752 6.29512 6.32531 6.46629 6.58246 6.75972 6.82011 6.88716 7.01973 7.17761 7.24318 7.52943 7.89365 7.95824 8.22675 8.49391 9.09714 9.68158 9.94530 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004225 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.805175 B = 6625.515228 C = 8412.698112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.138 6.138 3 N -0.482 5.482 4 C 0.087 3.913 5 C 0.581 3.419 6 O -0.523 6.523 7 C -0.161 4.161 8 C -0.058 4.058 9 C -0.106 4.106 10 C 0.079 3.921 11 C -0.050 4.050 12 N -0.392 5.392 13 C -0.115 4.115 14 C 0.093 3.907 15 N -0.451 5.451 16 C 0.227 3.773 17 C -0.399 4.399 18 H 0.095 0.905 19 C 0.067 3.933 20 N -0.702 5.702 21 Si 0.909 3.091 22 H -0.274 1.274 23 H -0.260 1.260 24 H -0.258 1.258 25 C -0.043 4.043 26 Cl -0.063 7.063 27 C -0.075 4.075 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.281 0.719 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 1.921 -13.703 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.142 6.142 3 N -0.261 5.261 4 C -0.054 4.054 5 C 0.374 3.626 6 O -0.400 6.400 7 C -0.164 4.164 8 C -0.077 4.077 9 C -0.125 4.125 10 C 0.076 3.924 11 C -0.195 4.195 12 N -0.104 5.104 13 C -0.277 4.277 14 C -0.079 4.079 15 N -0.167 5.167 16 C 0.103 3.897 17 C -0.428 4.428 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.321 5.321 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.184 1.184 24 H -0.182 1.182 25 C -0.071 4.071 26 Cl -0.034 7.034 27 C -0.094 4.094 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.093 0.907 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.464 2.188 -13.459 14.069 hybrid contribution 0.216 -0.009 0.075 0.228 sum -3.249 2.179 -13.384 13.944 Atomic orbital electron populations 1.23404 0.81361 1.04325 1.01638 1.90594 1.20573 1.06832 1.96178 1.49905 1.58652 1.10397 1.07194 1.21887 1.02242 0.97155 0.84084 1.18439 0.77445 0.83983 0.82767 1.90808 1.42490 1.20843 1.85836 1.19438 1.10748 0.93504 0.92758 1.21101 0.95794 1.00184 0.90612 1.21255 1.00117 0.93060 0.98083 1.18535 0.91343 0.92018 0.90475 1.19858 0.97459 1.07529 0.94692 1.67696 1.17074 1.02321 1.23345 1.22552 1.03674 1.09614 0.91907 1.23582 0.91693 0.94745 0.97872 1.69539 1.16295 1.08113 1.22780 1.19139 0.92623 0.91043 0.86861 1.19762 1.04000 1.23190 0.95893 0.88682 1.26203 0.99313 0.95866 0.94772 1.70003 1.33560 1.28991 0.99545 0.86320 0.80676 0.80897 0.78967 1.19824 1.18374 1.18208 1.20986 1.06453 0.85488 0.94152 1.98336 1.95512 1.10717 1.98786 1.21716 0.96621 0.93541 0.97563 0.92213 0.92848 0.87242 0.91571 0.90643 0.89459 0.84891 0.84104 0.85357 0.85149 0.90720 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 10.90 101.05 1.10 1.01 16 2 O -0.14 -1.61 7.79 -11.47 -0.09 -1.70 16 3 N -0.48 -6.03 3.36 -68.06 -0.23 -6.26 16 4 C 0.09 0.78 10.76 59.85 0.64 1.42 16 5 C 0.58 9.00 7.60 -12.36 -0.09 8.90 16 6 O -0.52 -9.13 16.17 5.31 0.09 -9.04 16 7 C -0.16 -2.64 5.82 -104.88 -0.61 -3.25 16 8 C -0.06 -0.97 9.57 -39.25 -0.38 -1.35 16 9 C -0.11 -2.00 7.87 -39.23 -0.31 -2.31 16 10 C 0.08 1.65 4.89 -104.81 -0.51 1.14 16 11 C -0.05 -1.18 5.65 -82.12 -0.46 -1.64 16 12 N -0.39 -9.14 9.50 -8.98 -0.09 -9.23 16 13 C -0.11 -2.52 11.22 -17.12 -0.19 -2.71 16 14 C 0.09 2.12 11.22 -17.28 -0.19 1.92 16 15 N -0.45 -11.69 8.09 -10.71 -0.09 -11.78 16 16 C 0.23 5.82 6.53 -84.55 -0.55 5.27 16 17 C -0.40 -9.83 8.07 -37.88 -0.31 -10.14 16 18 H 0.10 2.23 5.95 -52.49 -0.31 1.92 16 19 C 0.07 1.57 5.50 -17.31 -0.10 1.48 16 20 N -0.70 -17.28 11.52 55.56 0.64 -16.64 16 21 Si 0.91 17.54 29.56 -169.99 -5.03 12.51 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 25 C -0.04 -0.82 6.34 -39.12 -0.25 -1.07 16 26 Cl -0.06 -1.17 27.32 -51.86 -1.42 -2.59 16 27 C -0.08 -1.24 8.23 -39.21 -0.32 -1.57 16 28 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.80 7.47 -51.93 -0.39 0.41 16 34 H 0.13 2.03 7.81 -52.49 -0.41 1.62 16 35 H 0.14 2.65 7.79 -52.49 -0.41 2.24 16 36 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 39 H 0.15 2.30 5.15 -52.49 -0.27 2.03 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -29.89 354.03 -7.28 -37.16 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.88 Total: 5.10 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.53 Total: -2.88 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.24 Total: -43.90 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.00 Total: -10.74 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.42 Total: -2.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.89 -7.28 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243520504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.269 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds