Wall clock time and date at job start Wed Apr 1 2020 04:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41594 * 113.99857 * 2 1 4 4 C 1.46504 * 120.00467 * 273.77324 * 3 2 1 5 5 C 1.34777 * 120.00159 * 93.77031 * 3 2 1 6 6 O 1.21562 * 120.00700 * 185.98814 * 5 3 2 7 7 C 1.47807 * 119.99856 * 5.99161 * 5 3 2 8 8 C 1.39693 * 120.01386 * 188.32151 * 7 5 3 9 9 C 1.37673 * 120.01250 * 180.02562 * 8 7 5 10 10 C 1.39530 * 120.03415 * 0.02562 * 9 8 7 11 11 C 1.48233 * 119.98671 * 179.97438 * 10 9 8 12 12 C 1.40043 * 119.99053 * 359.97438 * 11 10 9 13 13 N 1.32187 * 120.29498 * 180.02562 * 12 11 10 14 14 C 1.31880 * 120.28004 * 359.70474 * 13 12 11 15 15 C 1.40856 * 119.96758 * 0.56731 * 14 13 12 16 16 C 1.41342 * 120.14264 * 179.70493 * 15 14 13 17 17 H 1.07995 * 119.99871 * 196.53561 * 16 15 14 18 18 C 1.40053 * 120.00023 * 16.53386 * 16 15 14 19 19 N 1.30730 * 119.99729 * 29.56356 * 18 16 15 20 20 Si 1.86799 * 120.00074 * 209.56254 * 18 16 15 21 21 H 1.48502 * 109.47027 * 265.00833 * 20 18 16 22 22 H 1.48496 * 109.47264 * 25.00629 * 20 18 16 23 23 H 1.48498 * 109.47033 * 145.00785 * 20 18 16 24 24 N 1.32550 * 119.98664 * 179.97438 * 11 10 9 25 25 C 1.39597 * 120.02213 * 0.23402 * 10 9 8 26 26 Cl 1.73604 * 120.00566 * 179.74529 * 25 10 9 27 27 C 1.37866 * 119.98926 * 359.48800 * 25 10 9 28 28 H 1.08997 * 109.47117 * 60.00291 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46766 * 299.99531 * 1 2 3 31 31 H 1.09002 * 109.46746 * 270.00137 * 4 3 2 32 32 H 1.09004 * 109.46717 * 29.99940 * 4 3 2 33 33 H 1.09001 * 109.47495 * 150.00055 * 4 3 2 34 34 H 1.07997 * 119.99611 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.98485 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.84792 * 0.04313 * 12 11 10 37 37 H 1.08004 * 120.01078 * 180.30613 * 14 13 12 38 38 H 0.96998 * 119.99806 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.01946 * 180.25737 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2266 1.9968 -1.2660 5 6 2.3491 1.8780 1.1647 6 8 2.7416 3.0285 1.1749 7 6 2.2495 1.1200 2.4297 8 6 2.4374 1.7713 3.6511 9 6 2.3451 1.0651 4.8294 10 6 2.0645 -0.3014 4.8044 11 6 1.9659 -1.0608 6.0736 12 6 2.1550 -0.4066 7.2973 13 7 2.0690 -1.0780 8.4327 14 6 1.7986 -2.3688 8.4231 15 6 1.6120 -3.0395 7.1986 16 6 1.3282 -4.4240 7.1838 17 1 1.4475 -4.9899 6.2717 18 6 0.8922 -5.0620 8.3518 19 7 0.2100 -4.3948 9.2454 20 14 1.2854 -6.8664 8.6329 21 1 0.1440 -7.6989 8.1754 22 1 2.5036 -7.2327 7.8668 23 1 1.5213 -7.1020 10.0800 24 7 1.6988 -2.3589 6.0499 25 6 1.8819 -0.9548 3.5843 26 17 1.5393 -2.6564 3.5535 27 6 1.9684 -0.2474 2.4041 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 3.2184 1.7541 -1.6475 32 1 1.4730 1.6875 -1.9902 33 1 2.1535 3.0719 -1.1021 34 1 2.6550 2.8289 3.6712 35 1 2.4900 1.5691 5.7735 36 1 2.3718 0.6513 7.3133 37 1 1.7244 -2.9121 9.3536 38 1 -0.0922 -4.8367 10.0542 39 1 1.8231 -0.7516 1.4601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243521209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:53 Heat of formation + Delta-G solvation = 56.519926 kcal Electronic energy + Delta-G solvation = -27153.913941 eV Core-core repulsion = 23090.727930 eV Total energy + Delta-G solvation = -4063.186011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.45590 -39.33515 -38.09479 -37.72676 -35.67438 -34.35432 -33.31295 -32.93493 -31.86257 -30.54474 -29.32774 -27.71156 -26.67131 -26.05185 -24.00236 -22.99226 -21.53016 -21.43399 -20.58620 -18.45395 -17.97160 -17.08506 -16.50555 -16.12756 -16.07723 -15.60114 -15.26783 -15.02594 -14.70608 -14.57384 -14.26029 -14.19240 -13.69304 -13.39929 -13.32246 -13.18524 -12.90291 -12.57725 -12.31273 -12.08134 -11.80832 -11.59147 -11.44707 -11.11043 -10.95768 -10.92398 -10.73707 -10.67365 -10.55742 -9.95771 -9.89377 -9.53775 -9.35591 -9.29341 -8.83437 -8.51134 -7.59296 -7.26874 -7.24272 -4.74942 0.62252 1.42996 1.53546 2.23298 2.59580 2.76612 2.92447 2.95989 3.00546 3.08544 3.67968 3.69944 3.93103 4.33500 4.66027 4.84587 4.92117 4.96800 4.97993 5.05980 5.13115 5.25761 5.31786 5.39735 5.47160 5.59078 5.65383 5.83209 5.98621 6.08961 6.12341 6.19197 6.31665 6.41949 6.64738 6.77863 6.81438 6.97605 7.09550 7.14461 7.53455 7.78500 8.06802 8.27916 8.43391 9.08778 9.56152 9.75270 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002950 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.677673 B = 9487.790246 C =10652.499535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.137 6.137 3 N -0.482 5.482 4 C 0.085 3.915 5 C 0.580 3.420 6 O -0.522 6.522 7 C -0.150 4.150 8 C -0.059 4.059 9 C -0.114 4.114 10 C 0.025 3.975 11 C 0.117 3.883 12 C -0.090 4.090 13 N -0.441 5.441 14 C 0.005 3.995 15 C 0.219 3.781 16 C -0.415 4.415 17 H 0.093 0.907 18 C 0.081 3.919 19 N -0.762 5.762 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.254 1.254 23 H -0.270 1.270 24 N -0.495 5.495 25 C -0.031 4.031 26 Cl -0.017 7.017 27 C -0.091 4.091 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.291 0.709 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 6.094 -15.112 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.140 6.140 3 N -0.262 5.262 4 C -0.055 4.055 5 C 0.373 3.627 6 O -0.399 6.399 7 C -0.153 4.153 8 C -0.078 4.078 9 C -0.133 4.133 10 C 0.022 3.978 11 C -0.026 4.026 12 C -0.247 4.247 13 N -0.152 5.152 14 C -0.167 4.167 15 C 0.092 3.908 16 C -0.448 4.448 17 H 0.111 0.889 18 C -0.143 4.143 19 N -0.385 5.385 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.178 1.178 23 H -0.195 1.195 24 N -0.213 5.213 25 C -0.060 4.060 26 Cl 0.012 6.988 27 C -0.109 4.109 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.103 0.897 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.088 6.403 -14.923 16.238 hybrid contribution -0.378 -0.935 0.237 1.036 sum -0.466 5.468 -14.686 15.678 Atomic orbital electron populations 1.23453 0.81074 1.04611 1.01824 1.90506 1.20775 1.07089 1.95639 1.49863 1.59251 1.10072 1.06985 1.21926 1.02189 0.97603 0.83813 1.18409 0.76441 0.85285 0.82597 1.90804 1.47512 1.16251 1.85354 1.19572 1.09162 0.93858 0.92730 1.21132 0.95835 1.00375 0.90419 1.21184 1.00780 0.92616 0.98724 1.18960 0.94754 0.92631 0.91429 1.20249 0.98645 0.92470 0.91276 1.22551 1.14058 0.99603 0.88495 1.67887 1.08739 1.09246 1.29304 1.23824 1.02891 0.90150 0.99865 1.19345 0.89510 0.94260 0.87693 1.19337 1.36886 0.91674 0.96873 0.88852 1.26100 0.91476 1.02006 0.94760 1.69812 1.20531 1.39914 1.08261 0.86163 0.80577 0.80577 0.78864 1.19089 1.17783 1.19498 1.69526 1.17961 1.04892 1.28937 1.21101 1.03232 0.88272 0.93347 1.98415 1.92551 1.09433 1.98352 1.22377 0.96382 0.93198 0.98963 0.92543 0.86901 0.92234 0.91468 0.90516 0.89200 0.84432 0.84056 0.85209 0.82699 0.89748 0.81473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 10.78 101.05 1.09 0.99 16 2 O -0.14 -1.45 7.65 -11.47 -0.09 -1.53 16 3 N -0.48 -5.42 3.35 -68.05 -0.23 -5.65 16 4 C 0.08 0.67 10.85 59.85 0.65 1.32 16 5 C 0.58 8.04 7.70 -12.35 -0.10 7.94 16 6 O -0.52 -8.15 15.92 5.31 0.08 -8.06 16 7 C -0.15 -2.19 5.87 -104.92 -0.62 -2.80 16 8 C -0.06 -0.84 9.57 -39.24 -0.38 -1.22 16 9 C -0.11 -1.79 9.41 -39.31 -0.37 -2.16 16 10 C 0.02 0.47 5.88 -104.80 -0.62 -0.14 16 11 C 0.12 2.67 6.73 -82.77 -0.56 2.11 16 12 C -0.09 -2.06 10.61 -16.72 -0.18 -2.23 16 13 N -0.44 -11.04 10.47 -12.04 -0.13 -11.17 16 14 C 0.00 0.12 9.99 -16.54 -0.17 -0.05 16 15 C 0.22 5.74 6.47 -84.84 -0.55 5.20 16 16 C -0.42 -10.44 9.23 -37.72 -0.35 -10.79 16 17 H 0.09 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.08 1.86 4.93 -17.34 -0.09 1.77 16 19 N -0.76 -17.99 11.20 55.55 0.62 -17.37 16 20 Si 0.92 17.03 29.65 -169.99 -5.04 11.99 16 21 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.25 -4.77 7.11 56.52 0.40 -4.37 16 23 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 24 N -0.49 -12.30 6.94 -7.51 -0.05 -12.36 16 25 C -0.03 -0.56 6.34 -39.21 -0.25 -0.81 16 26 Cl -0.02 -0.33 25.66 -51.86 -1.33 -1.66 16 27 C -0.09 -1.36 8.50 -39.20 -0.33 -1.69 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.73 7.35 -51.93 -0.38 0.35 16 34 H 0.14 1.76 7.66 -52.49 -0.40 1.36 16 35 H 0.14 1.98 6.17 -52.49 -0.32 1.65 16 36 H 0.13 2.50 6.17 -52.49 -0.32 2.18 16 37 H 0.16 4.01 6.03 -52.48 -0.32 3.69 16 38 H 0.29 6.10 8.29 -40.82 -0.34 5.77 16 39 H 0.17 2.27 4.35 -54.88 -0.24 2.03 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -29.76 349.72 -7.34 -37.10 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.65 Total: 6.01 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.80 Total: -2.57 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.22 Total: -46.54 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.00 Total: -9.60 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.04 Total: 11.99 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.33 Total: -1.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.76 -7.34 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243521209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.623 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds