Wall clock time and date at job start Wed Apr 1 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41594 * 113.99857 * 2 1 4 4 C 1.46504 * 120.00467 * 273.77324 * 3 2 1 5 5 C 1.34777 * 120.00159 * 93.77031 * 3 2 1 6 6 O 1.21562 * 120.00700 * 185.98814 * 5 3 2 7 7 C 1.47807 * 119.99856 * 5.99161 * 5 3 2 8 8 C 1.39693 * 120.01386 * 188.32151 * 7 5 3 9 9 C 1.37673 * 120.01250 * 180.02562 * 8 7 5 10 10 C 1.39530 * 120.03415 * 0.02562 * 9 8 7 11 11 C 1.48233 * 119.98671 * 179.97438 * 10 9 8 12 12 C 1.40043 * 119.99053 * 359.97438 * 11 10 9 13 13 N 1.32187 * 120.29498 * 180.02562 * 12 11 10 14 14 C 1.31880 * 120.28004 * 359.70474 * 13 12 11 15 15 C 1.40856 * 119.96758 * 0.56731 * 14 13 12 16 16 C 1.41342 * 120.14264 * 179.70493 * 15 14 13 17 17 H 1.07995 * 119.99871 * 196.53561 * 16 15 14 18 18 C 1.40053 * 120.00023 * 16.53386 * 16 15 14 19 19 N 1.30730 * 119.99729 * 29.56356 * 18 16 15 20 20 Si 1.86799 * 120.00074 * 209.56254 * 18 16 15 21 21 H 1.48502 * 109.47027 * 265.00833 * 20 18 16 22 22 H 1.48496 * 109.47264 * 25.00629 * 20 18 16 23 23 H 1.48498 * 109.47033 * 145.00785 * 20 18 16 24 24 N 1.32550 * 119.98664 * 179.97438 * 11 10 9 25 25 C 1.39597 * 120.02213 * 0.23402 * 10 9 8 26 26 Cl 1.73604 * 120.00566 * 179.74529 * 25 10 9 27 27 C 1.37866 * 119.98926 * 359.48800 * 25 10 9 28 28 H 1.08997 * 109.47117 * 60.00291 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46766 * 299.99531 * 1 2 3 31 31 H 1.09002 * 109.46746 * 270.00137 * 4 3 2 32 32 H 1.09004 * 109.46717 * 29.99940 * 4 3 2 33 33 H 1.09001 * 109.47495 * 150.00055 * 4 3 2 34 34 H 1.07997 * 119.99611 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.98485 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.84792 * 0.04313 * 12 11 10 37 37 H 1.08004 * 120.01078 * 180.30613 * 14 13 12 38 38 H 0.96998 * 119.99806 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.01946 * 180.25737 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2266 1.9968 -1.2660 5 6 2.3491 1.8780 1.1647 6 8 2.7416 3.0285 1.1749 7 6 2.2495 1.1200 2.4297 8 6 2.4374 1.7713 3.6511 9 6 2.3451 1.0651 4.8294 10 6 2.0645 -0.3014 4.8044 11 6 1.9659 -1.0608 6.0736 12 6 2.1550 -0.4066 7.2973 13 7 2.0690 -1.0780 8.4327 14 6 1.7986 -2.3688 8.4231 15 6 1.6120 -3.0395 7.1986 16 6 1.3282 -4.4240 7.1838 17 1 1.4475 -4.9899 6.2717 18 6 0.8922 -5.0620 8.3518 19 7 0.2100 -4.3948 9.2454 20 14 1.2854 -6.8664 8.6329 21 1 0.1440 -7.6989 8.1754 22 1 2.5036 -7.2327 7.8668 23 1 1.5213 -7.1020 10.0800 24 7 1.6988 -2.3589 6.0499 25 6 1.8819 -0.9548 3.5843 26 17 1.5393 -2.6564 3.5535 27 6 1.9684 -0.2474 2.4041 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 3.2184 1.7541 -1.6475 32 1 1.4730 1.6875 -1.9902 33 1 2.1535 3.0719 -1.1021 34 1 2.6550 2.8289 3.6712 35 1 2.4900 1.5691 5.7735 36 1 2.3718 0.6513 7.3133 37 1 1.7244 -2.9121 9.3536 38 1 -0.0922 -4.8367 10.0542 39 1 1.8231 -0.7516 1.4601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243521209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:52 Heat of formation + Delta-G solvation = 39.165786 kcal Electronic energy + Delta-G solvation = -27154.666473 eV Core-core repulsion = 23090.727930 eV Total energy + Delta-G solvation = -4063.938543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59792 -40.96450 -39.43945 -38.64453 -37.08970 -36.13554 -34.66552 -34.14937 -33.43544 -31.85416 -30.85384 -28.63510 -28.02896 -27.26173 -25.38272 -24.55674 -23.08135 -22.89673 -21.65731 -19.68406 -19.49509 -18.27356 -17.73434 -17.52128 -17.34702 -17.04283 -16.76102 -16.50540 -15.87517 -15.59009 -15.53309 -15.37934 -15.20852 -14.87045 -14.48440 -14.25893 -13.88523 -13.75055 -13.56606 -13.32985 -13.20228 -13.03470 -12.84083 -12.60917 -12.43547 -12.32576 -12.30407 -12.05820 -11.72198 -11.69973 -11.19450 -11.07083 -10.90878 -10.48039 -10.18481 -9.83359 -9.25849 -9.09352 -8.99575 -6.63677 -0.72104 0.17760 0.62206 0.71907 0.94088 1.37190 1.37992 1.47322 1.57086 1.64328 2.14105 2.47731 2.66910 2.76774 3.32142 3.70126 3.72980 3.85187 3.99737 4.10509 4.23765 4.33008 4.34147 4.35799 4.39369 4.46338 4.55055 4.61428 4.73724 4.80875 4.83661 4.93555 4.98019 5.05526 5.16134 5.19406 5.27723 5.38191 5.60055 5.71481 6.15363 6.17869 6.44873 6.56587 6.77162 7.21843 7.70099 8.03623 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002950 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.677673 B = 9487.790246 C =10652.499535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.148 6.148 3 N -0.477 5.477 4 C 0.079 3.921 5 C 0.578 3.422 6 O -0.542 6.542 7 C -0.142 4.142 8 C -0.052 4.052 9 C -0.101 4.101 10 C -0.009 4.009 11 C 0.118 3.882 12 C -0.103 4.103 13 N -0.450 5.450 14 C -0.032 4.032 15 C 0.194 3.806 16 C -0.441 4.441 17 H 0.086 0.914 18 C 0.048 3.952 19 N -0.787 5.787 20 Si 0.991 3.009 21 H -0.256 1.256 22 H -0.258 1.258 23 H -0.257 1.257 24 N -0.507 5.507 25 C -0.040 4.040 26 Cl -0.036 7.036 27 C -0.081 4.081 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.146 0.854 38 H 0.304 0.696 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 6.671 -17.007 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.151 6.151 3 N -0.256 5.256 4 C -0.059 4.059 5 C 0.369 3.631 6 O -0.421 6.421 7 C -0.146 4.146 8 C -0.071 4.071 9 C -0.120 4.120 10 C -0.012 4.012 11 C -0.027 4.027 12 C -0.260 4.260 13 N -0.162 5.162 14 C -0.201 4.201 15 C 0.068 3.932 16 C -0.473 4.473 17 H 0.105 0.895 18 C -0.175 4.175 19 N -0.410 5.410 20 Si 0.809 3.191 21 H -0.180 1.180 22 H -0.182 1.182 23 H -0.181 1.181 24 N -0.226 5.226 25 C -0.068 4.068 26 Cl -0.006 7.006 27 C -0.100 4.100 28 H 0.098 0.902 29 H 0.147 0.853 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.130 6.959 -16.823 18.206 hybrid contribution -0.412 -0.934 0.600 1.184 sum -0.542 6.025 -16.223 17.314 Atomic orbital electron populations 1.23655 0.79473 1.05875 1.02396 1.90449 1.22369 1.06644 1.95616 1.49893 1.58228 1.10166 1.07293 1.22188 1.03745 0.97235 0.82762 1.18213 0.76805 0.85022 0.83021 1.90801 1.48649 1.16870 1.85816 1.19872 1.07292 0.93672 0.93748 1.21369 0.94704 1.01291 0.89752 1.21342 0.99303 0.91186 1.00142 1.18962 0.98233 0.93857 0.90148 1.20827 0.96606 0.92065 0.93154 1.23094 1.13915 1.01055 0.87980 1.67828 1.08689 1.09053 1.30615 1.23626 1.06169 0.90786 0.99562 1.19651 0.90232 0.95057 0.88265 1.19559 1.38137 0.91744 0.97859 0.89547 1.26970 0.90441 1.06405 0.93649 1.69809 1.20444 1.42004 1.08792 0.85062 0.80205 0.74563 0.79236 1.18004 1.18179 1.18073 1.69593 1.18540 1.06034 1.28465 1.21237 1.03998 0.87542 0.94059 1.98406 1.92768 1.11082 1.98377 1.22508 0.95597 0.93307 0.98543 0.90240 0.85307 0.93381 0.90566 0.87716 0.89316 0.82245 0.82262 0.81817 0.83659 0.88481 0.79982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.23 10.78 113.37 1.22 0.99 16 2 O -0.15 -2.73 7.65 -38.77 -0.30 -3.03 16 3 N -0.48 -9.45 3.35 -487.49 -1.63 -11.08 16 4 C 0.08 1.01 10.85 127.77 1.39 2.40 16 5 C 0.58 14.64 7.70 86.78 0.67 15.31 16 6 O -0.54 -15.68 15.92 -3.91 -0.06 -15.74 16 7 C -0.14 -3.86 5.87 -20.06 -0.12 -3.98 16 8 C -0.05 -1.38 9.57 22.49 0.22 -1.17 16 9 C -0.10 -2.99 9.41 22.45 0.21 -2.78 16 10 C -0.01 -0.36 5.88 -19.98 -0.12 -0.47 16 11 C 0.12 5.47 6.73 42.13 0.28 5.76 16 12 C -0.10 -4.72 10.61 85.08 0.90 -3.82 16 13 N -0.45 -23.18 10.47 -192.02 -2.01 -25.19 16 14 C -0.03 -1.71 9.99 85.33 0.85 -0.86 16 15 C 0.19 10.62 6.47 40.25 0.26 10.88 16 16 C -0.44 -23.05 9.23 23.47 0.22 -22.83 16 17 H 0.09 4.48 7.99 -2.91 -0.02 4.45 16 18 C 0.05 2.23 4.93 85.30 0.42 2.65 16 19 N -0.79 -38.01 11.20 21.84 0.24 -37.76 16 20 Si 0.99 34.92 29.65 68.60 2.03 36.96 16 21 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 23 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 24 N -0.51 -26.09 6.94 -177.68 -1.23 -27.32 16 25 C -0.04 -1.43 6.34 22.51 0.14 -1.29 16 26 Cl -0.04 -1.38 25.66 -2.72 -0.07 -1.45 16 27 C -0.08 -2.32 8.50 22.52 0.19 -2.13 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.09 1.20 7.35 -2.39 -0.02 1.18 16 34 H 0.16 3.57 7.66 -2.91 -0.02 3.55 16 35 H 0.16 4.06 6.17 -2.91 -0.02 4.05 16 36 H 0.16 6.11 6.17 -2.91 -0.02 6.10 16 37 H 0.15 7.94 6.03 -2.91 -0.02 7.92 16 38 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 39 H 0.18 4.63 4.35 -40.80 -0.18 4.46 16 Total: -1.00 -66.62 349.72 4.67 -61.95 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.96 Total: 24.01 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.74 Total: -1.34 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -4.63 Total: -101.36 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.36 Total: -18.77 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.96 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.07 Total: -1.45 kcal Total: -66.62 4.67 -61.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243521209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.113 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds