Wall clock time and date at job start Wed Apr 1 2020 04:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00320 * 2 1 4 4 S 1.65604 * 119.99764 * 179.97438 * 2 1 3 5 5 O 1.42108 * 106.40322 * 336.46159 * 4 2 1 6 6 O 1.42093 * 106.40288 * 203.54174 * 4 2 1 7 7 N 1.65604 * 107.21929 * 90.00016 * 4 2 1 8 8 C 1.46505 * 119.99539 * 64.99856 * 7 4 2 9 9 C 1.52998 * 109.46632 * 165.00390 * 8 7 4 10 10 N 1.46502 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00062 * 179.97438 * 10 9 8 12 12 O 1.21762 * 119.99887 * 0.02562 * 11 10 9 13 13 C 1.46234 * 120.00045 * 179.97438 * 11 10 9 14 14 S 1.75665 * 125.22712 * 0.03220 * 13 11 10 15 15 C 1.75471 * 92.09431 * 179.97438 * 14 13 11 16 16 C 1.32767 * 111.36085 * 359.73107 * 15 14 13 17 17 C 1.39539 * 125.23118 * 179.97438 * 13 11 10 18 18 C 1.40540 * 123.71469 * 0.02562 * 17 13 11 19 19 H 1.08004 * 120.00051 * 335.71790 * 18 17 13 20 20 C 1.40306 * 120.00428 * 155.71312 * 18 17 13 21 21 N 1.30645 * 119.99696 * 339.52682 * 20 18 17 22 22 Si 1.86794 * 120.00365 * 159.52472 * 20 18 17 23 23 H 1.48500 * 109.47423 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47273 * 300.00550 * 22 20 18 25 25 H 1.48502 * 109.47039 * 60.00366 * 22 20 18 26 26 H 1.09001 * 109.47142 * 270.00501 * 1 2 3 27 27 H 1.09001 * 109.47131 * 30.00076 * 1 2 3 28 28 H 1.09004 * 109.47346 * 150.00129 * 1 2 3 29 29 H 1.09002 * 109.46755 * 269.99856 * 3 2 1 30 30 H 1.08993 * 109.47147 * 29.99314 * 3 2 1 31 31 H 1.08995 * 109.47334 * 149.99848 * 3 2 1 32 32 H 0.96993 * 120.00084 * 245.00596 * 7 4 2 33 33 H 1.08993 * 109.47131 * 45.00068 * 8 7 4 34 34 H 1.09000 * 109.46793 * 285.00309 * 8 7 4 35 35 H 1.09004 * 109.47132 * 59.99992 * 9 8 7 36 36 H 1.09000 * 109.47112 * 299.99920 * 9 8 7 37 37 H 0.96998 * 120.00107 * 359.97438 * 10 9 8 38 38 H 1.08002 * 124.32446 * 179.97438 * 15 14 13 39 39 H 1.07997 * 122.78709 * 180.23016 * 16 15 14 40 40 H 0.96997 * 119.99920 * 353.99866 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 0.0006 5 8 1.4112 -2.4064 0.5455 6 8 3.5758 -1.1567 0.5450 7 7 2.5381 -1.8595 -1.5810 8 6 3.3863 -1.0291 -2.4397 9 6 3.7521 -1.8101 -3.7035 10 7 4.5998 -0.9796 -4.5625 11 6 5.0474 -1.4636 -5.7380 12 8 4.7468 -2.5910 -6.0863 13 6 5.8930 -0.6344 -6.5958 14 16 6.4085 1.0047 -6.2305 15 6 7.3061 1.1261 -7.7334 16 6 7.2182 0.0062 -8.4409 17 6 6.4155 -1.0239 -7.8296 18 6 6.1886 -2.2835 -8.4102 19 1 5.9389 -3.1288 -7.7860 20 6 6.2863 -2.4430 -9.8008 21 7 6.1876 -1.4035 -10.5860 22 14 6.5576 -4.1414 -10.5294 23 1 6.6241 -4.0403 -12.0095 24 1 7.8315 -4.7037 -10.0134 25 1 5.4322 -5.0306 -10.1446 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3792 1.5832 -1.0277 30 1 1.6085 2.0283 0.5137 31 1 3.1499 1.1383 0.5138 32 1 2.1200 -2.6582 -1.9388 33 1 4.2957 -0.7611 -1.9021 34 1 2.8471 -0.1229 -2.7158 35 1 2.8425 -2.0780 -4.2411 36 1 4.2912 -2.7163 -3.4273 37 1 4.8389 -0.0813 -4.2853 38 1 7.8625 1.9990 -8.0416 39 1 7.7046 -0.1215 -9.3967 40 1 5.9604 -0.5361 -10.2160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297574795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:58 Heat of formation + Delta-G solvation = -93.904892 kcal Electronic energy + Delta-G solvation = -25494.042195 eV Core-core repulsion = 21561.820932 eV Total energy + Delta-G solvation = -3932.221263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -38.56657 -37.55369 -36.72323 -36.49026 -36.08744 -35.87793 -33.27856 -33.07659 -29.37302 -28.50670 -28.16556 -25.64816 -25.01908 -23.09106 -22.21937 -20.35753 -19.62744 -19.10320 -18.25847 -18.04297 -17.51946 -16.67668 -16.36665 -15.60802 -15.35738 -15.11257 -14.75003 -14.60119 -14.29822 -14.14448 -13.84459 -13.63472 -13.40657 -13.07882 -12.99644 -12.72764 -12.56222 -12.34222 -12.16089 -12.09090 -12.01087 -11.91158 -11.86441 -11.56880 -11.41333 -11.09796 -10.75553 -10.47403 -10.14354 -9.86417 -9.79977 -9.52460 -9.21308 -8.61247 -8.41546 -7.83097 -7.40909 -7.37401 -4.64947 0.28437 1.97232 2.51778 2.88349 3.02515 3.08287 3.22905 3.29636 3.48658 3.62583 3.87352 3.94719 4.16025 4.33259 4.37413 4.61504 4.92227 4.93216 4.99662 5.06085 5.15170 5.26453 5.34292 5.37394 5.44688 5.59901 5.77999 5.93710 5.97636 6.06335 6.34849 6.67797 6.70727 6.92078 7.09296 7.20072 7.22182 7.70662 7.87869 8.32798 8.41599 8.67066 9.45746 9.71695 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.002403 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.894390 B =11650.957291 C =12707.438927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.015 6.015 3 C 0.081 3.919 4 S 2.792 3.208 5 O -0.976 6.976 6 O -0.973 6.973 7 N -1.123 6.123 8 C 0.109 3.891 9 C 0.124 3.876 10 N -0.751 5.751 11 C 0.601 3.399 12 O -0.562 6.562 13 C -0.439 4.439 14 S -0.037 6.037 15 C -0.185 4.185 16 C -0.142 4.142 17 C 0.112 3.888 18 C -0.423 4.423 19 H 0.110 0.890 20 C 0.028 3.972 21 N -0.776 5.776 22 Si 1.074 2.926 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.269 1.269 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.419 0.581 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.390 0.610 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 5.795 13.628 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.856 5.856 3 C -0.065 4.065 4 S 2.798 3.202 5 O -0.960 6.960 6 O -0.956 6.956 7 N -0.885 5.885 8 C -0.018 4.018 9 C -0.002 4.002 10 N -0.406 5.406 11 C 0.398 3.602 12 O -0.445 6.445 13 C -0.557 4.557 14 S 0.219 5.781 15 C -0.319 4.319 16 C -0.176 4.176 17 C 0.102 3.898 18 C -0.453 4.453 19 H 0.128 0.872 20 C -0.196 4.196 21 N -0.399 5.399 22 Si 0.896 3.104 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.224 0.776 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.779 4.921 13.970 16.731 hybrid contribution -0.213 0.613 -0.131 0.662 sum -7.992 5.534 13.839 16.913 Atomic orbital electron populations 1.21465 0.78092 1.03239 1.02241 1.57674 1.15561 1.22445 1.89968 1.21655 0.97340 0.85130 1.02345 1.01775 0.73239 0.72373 0.72768 1.93630 1.66675 1.59161 1.76533 1.93616 1.40403 1.84855 1.76740 1.55796 1.63046 1.37807 1.31834 1.21423 0.94567 0.93488 0.92359 1.21132 0.95641 0.94324 0.89098 1.45684 1.55257 1.18099 1.21553 1.16769 0.78666 0.85700 0.79043 1.90668 1.60688 1.19915 1.73253 1.22373 1.27185 0.98015 1.08154 1.82706 1.56369 1.16216 1.22834 1.24941 1.06051 1.01674 0.99272 1.21594 1.01362 0.93858 1.00739 1.17895 0.89495 0.91966 0.90469 1.21004 1.33527 0.96222 0.94545 0.87215 1.27573 0.91362 1.06231 0.94398 1.70445 1.25967 1.02809 1.40668 0.83498 0.78549 0.71915 0.76475 1.19628 1.19564 1.19393 0.92337 0.90866 0.91011 0.92438 0.90581 0.89785 0.74655 0.89783 0.91304 0.91599 0.91405 0.77646 0.84085 0.85115 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 10.29 59.85 0.62 1.22 16 2 N -1.02 -8.23 3.64 -129.21 -0.47 -8.70 16 3 C 0.08 0.53 10.66 59.85 0.64 1.17 16 4 S 2.79 30.04 6.11 -107.50 -0.66 29.39 16 5 O -0.98 -12.88 17.21 -57.17 -0.98 -13.87 16 6 O -0.97 -13.34 16.21 -57.17 -0.93 -14.27 16 7 N -1.12 -10.96 6.05 -10.61 -0.06 -11.02 16 8 C 0.11 1.17 6.36 -4.04 -0.03 1.14 16 9 C 0.12 1.82 5.82 -4.04 -0.02 1.80 16 10 N -0.75 -13.55 5.55 -61.75 -0.34 -13.90 16 11 C 0.60 14.23 7.76 -13.05 -0.10 14.13 16 12 O -0.56 -15.04 14.46 5.13 0.07 -14.96 16 13 C -0.44 -10.69 6.51 -35.89 -0.23 -10.92 16 14 S -0.04 -0.74 22.25 -107.50 -2.39 -3.13 16 15 C -0.18 -3.75 11.07 28.86 0.32 -3.43 16 16 C -0.14 -3.27 8.19 -39.12 -0.32 -3.59 16 17 C 0.11 2.89 5.40 -106.21 -0.57 2.32 16 18 C -0.42 -11.19 8.44 -37.94 -0.32 -11.51 16 19 H 0.11 3.08 6.13 -52.48 -0.32 2.75 16 20 C 0.03 0.69 5.24 -17.28 -0.09 0.60 16 21 N -0.78 -19.17 12.49 55.57 0.69 -18.47 16 22 Si 1.07 20.91 29.98 -169.99 -5.10 15.82 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.08 0.62 7.02 -51.93 -0.36 0.26 16 32 H 0.42 3.59 8.65 -34.47 -0.30 3.30 16 33 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.39 6.24 7.55 -40.82 -0.31 5.94 16 38 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.13 2.96 6.79 -52.49 -0.36 2.60 16 40 H 0.30 7.52 6.22 -40.82 -0.25 7.27 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -33.50 363.83 -9.68 -43.18 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -4.88 Total: 11.53 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.12 Total: -7.08 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.18 Total: -52.09 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.84 Total: -43.10 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.10 Total: 15.82 kcal Atomic # 16 Polarization: 29.31 SS G_CDS: -3.05 Total: 26.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.50 -9.68 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.727 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds