Wall clock time and date at job start Wed Apr 1 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00320 * 2 1 4 4 S 1.65604 * 119.99764 * 179.97438 * 2 1 3 5 5 O 1.42108 * 106.40322 * 336.46159 * 4 2 1 6 6 O 1.42093 * 106.40288 * 203.54174 * 4 2 1 7 7 N 1.65604 * 107.21929 * 90.00016 * 4 2 1 8 8 C 1.46505 * 119.99539 * 64.99856 * 7 4 2 9 9 C 1.52998 * 109.46632 * 165.00390 * 8 7 4 10 10 N 1.46502 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00062 * 179.97438 * 10 9 8 12 12 O 1.21762 * 119.99887 * 0.02562 * 11 10 9 13 13 C 1.46234 * 120.00045 * 179.97438 * 11 10 9 14 14 S 1.75665 * 125.22712 * 0.03220 * 13 11 10 15 15 C 1.75471 * 92.09431 * 179.97438 * 14 13 11 16 16 C 1.32767 * 111.36085 * 359.73107 * 15 14 13 17 17 C 1.39539 * 125.23118 * 179.97438 * 13 11 10 18 18 C 1.40540 * 123.71469 * 0.02562 * 17 13 11 19 19 H 1.08004 * 120.00051 * 335.71790 * 18 17 13 20 20 C 1.40306 * 120.00428 * 155.71312 * 18 17 13 21 21 N 1.30645 * 119.99696 * 339.52682 * 20 18 17 22 22 Si 1.86794 * 120.00365 * 159.52472 * 20 18 17 23 23 H 1.48500 * 109.47423 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47273 * 300.00550 * 22 20 18 25 25 H 1.48502 * 109.47039 * 60.00366 * 22 20 18 26 26 H 1.09001 * 109.47142 * 270.00501 * 1 2 3 27 27 H 1.09001 * 109.47131 * 30.00076 * 1 2 3 28 28 H 1.09004 * 109.47346 * 150.00129 * 1 2 3 29 29 H 1.09002 * 109.46755 * 269.99856 * 3 2 1 30 30 H 1.08993 * 109.47147 * 29.99314 * 3 2 1 31 31 H 1.08995 * 109.47334 * 149.99848 * 3 2 1 32 32 H 0.96993 * 120.00084 * 245.00596 * 7 4 2 33 33 H 1.08993 * 109.47131 * 45.00068 * 8 7 4 34 34 H 1.09000 * 109.46793 * 285.00309 * 8 7 4 35 35 H 1.09004 * 109.47132 * 59.99992 * 9 8 7 36 36 H 1.09000 * 109.47112 * 299.99920 * 9 8 7 37 37 H 0.96998 * 120.00107 * 359.97438 * 10 9 8 38 38 H 1.08002 * 124.32446 * 179.97438 * 15 14 13 39 39 H 1.07997 * 122.78709 * 180.23016 * 16 15 14 40 40 H 0.96997 * 119.99920 * 353.99866 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 0.0006 5 8 1.4112 -2.4064 0.5455 6 8 3.5758 -1.1567 0.5450 7 7 2.5381 -1.8595 -1.5810 8 6 3.3863 -1.0291 -2.4397 9 6 3.7521 -1.8101 -3.7035 10 7 4.5998 -0.9796 -4.5625 11 6 5.0474 -1.4636 -5.7380 12 8 4.7468 -2.5910 -6.0863 13 6 5.8930 -0.6344 -6.5958 14 16 6.4085 1.0047 -6.2305 15 6 7.3061 1.1261 -7.7334 16 6 7.2182 0.0062 -8.4409 17 6 6.4155 -1.0239 -7.8296 18 6 6.1886 -2.2835 -8.4102 19 1 5.9389 -3.1288 -7.7860 20 6 6.2863 -2.4430 -9.8008 21 7 6.1876 -1.4035 -10.5860 22 14 6.5576 -4.1414 -10.5294 23 1 6.6241 -4.0403 -12.0095 24 1 7.8315 -4.7037 -10.0134 25 1 5.4322 -5.0306 -10.1446 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 2.3792 1.5832 -1.0277 30 1 1.6085 2.0283 0.5137 31 1 3.1499 1.1383 0.5138 32 1 2.1200 -2.6582 -1.9388 33 1 4.2957 -0.7611 -1.9021 34 1 2.8471 -0.1229 -2.7158 35 1 2.8425 -2.0780 -4.2411 36 1 4.2912 -2.7163 -3.4273 37 1 4.8389 -0.0813 -4.2853 38 1 7.8625 1.9990 -8.0416 39 1 7.7046 -0.1215 -9.3967 40 1 5.9604 -0.5361 -10.2160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297574795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:57 Heat of formation + Delta-G solvation = -120.961606 kcal Electronic energy + Delta-G solvation = -25495.215462 eV Core-core repulsion = 21561.820932 eV Total energy + Delta-G solvation = -3933.394530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29898 -38.54081 -38.34266 -37.23460 -37.08913 -36.97240 -34.88076 -34.72972 -31.06712 -29.60048 -28.97685 -27.34550 -25.59878 -24.57889 -23.63327 -21.99845 -20.89112 -20.52959 -19.66515 -19.01752 -18.44832 -18.19492 -17.49318 -16.66097 -16.57364 -16.46013 -15.95998 -15.73768 -15.51324 -15.42621 -15.29627 -15.12981 -14.81702 -14.17057 -14.05691 -13.75608 -13.58774 -13.54285 -13.42683 -13.32906 -13.26059 -13.02515 -12.75803 -12.73036 -12.67264 -12.52680 -12.45751 -12.02199 -11.87452 -11.51891 -10.98792 -10.70079 -10.49950 -10.11040 -10.04044 -9.65943 -9.22879 -9.10952 -6.53728 -0.55700 0.18880 1.21528 1.39533 1.47796 1.66029 1.72128 1.79558 1.89833 2.25638 2.36414 2.49611 2.62798 3.15677 3.24457 3.57885 3.81748 3.99788 4.21318 4.28895 4.37859 4.47544 4.53963 4.58244 4.76359 4.80180 4.82518 4.93731 4.97263 5.02400 5.07285 5.19083 5.34885 5.37950 5.48058 5.60292 5.86665 5.92217 5.93978 6.49271 6.62016 6.88409 7.65809 7.83835 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.002403 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.894390 B =11650.957291 C =12707.438927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.011 6.011 3 C 0.072 3.928 4 S 2.809 3.191 5 O -1.003 7.003 6 O -1.004 7.004 7 N -1.119 6.119 8 C 0.118 3.882 9 C 0.122 3.878 10 N -0.734 5.734 11 C 0.591 3.409 12 O -0.602 6.602 13 C -0.472 4.472 14 S 0.038 5.962 15 C -0.168 4.168 16 C -0.174 4.174 17 C 0.089 3.911 18 C -0.467 4.467 19 H 0.081 0.919 20 C 0.002 3.998 21 N -0.788 5.788 22 Si 1.118 2.882 23 H -0.258 1.258 24 H -0.259 1.259 25 H -0.269 1.269 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.425 0.575 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.403 0.597 38 H 0.184 0.816 39 H 0.127 0.873 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 7.989 14.462 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.854 5.854 3 C -0.073 4.073 4 S 2.815 3.185 5 O -0.987 6.987 6 O -0.988 6.988 7 N -0.882 5.882 8 C -0.009 4.009 9 C -0.003 4.003 10 N -0.387 5.387 11 C 0.387 3.613 12 O -0.488 6.488 13 C -0.591 4.591 14 S 0.294 5.706 15 C -0.303 4.303 16 C -0.207 4.207 17 C 0.078 3.922 18 C -0.497 4.497 19 H 0.099 0.901 20 C -0.217 4.217 21 N -0.411 5.411 22 Si 0.934 3.066 23 H -0.182 1.182 24 H -0.184 1.184 25 H -0.194 1.194 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.260 0.740 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.201 0.799 39 H 0.145 0.855 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.123 7.164 14.862 18.390 hybrid contribution -0.183 0.108 -0.179 0.278 sum -8.306 7.272 14.684 18.371 Atomic orbital electron populations 1.21696 0.76798 1.04430 1.02985 1.57470 1.16310 1.21914 1.89733 1.21866 0.97180 0.84719 1.03505 1.01061 0.72397 0.72472 0.72534 1.93590 1.67157 1.60713 1.77192 1.93572 1.42243 1.85395 1.77551 1.55652 1.62983 1.38219 1.31314 1.21338 0.95402 0.93705 0.90417 1.21270 0.94700 0.94162 0.90206 1.45425 1.54413 1.18781 1.20128 1.16991 0.78691 0.85234 0.80375 1.90641 1.62007 1.21631 1.74540 1.22962 1.26916 1.00998 1.08211 1.82285 1.54713 1.11897 1.21679 1.25504 1.04415 1.01842 0.98513 1.21457 1.02995 0.94600 1.01698 1.18361 0.89661 0.92708 0.91434 1.20963 1.37058 0.96224 0.95487 0.90073 1.28703 0.90156 1.08814 0.94040 1.70529 1.27536 1.02728 1.40302 0.82984 0.78875 0.68245 0.76498 1.18217 1.18371 1.19367 0.91924 0.88490 0.91063 0.91015 0.88393 0.90831 0.73995 0.89462 0.88564 0.91736 0.92643 0.76161 0.79896 0.85514 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.29 127.77 1.31 2.19 16 2 N -1.01 -14.12 3.64 -562.70 -2.05 -16.17 16 3 C 0.07 0.75 10.66 127.77 1.36 2.11 16 4 S 2.81 57.23 6.11 -56.49 -0.34 56.88 16 5 O -1.00 -25.84 17.21 -128.00 -2.20 -28.04 16 6 O -1.00 -26.72 16.21 -128.00 -2.07 -28.79 16 7 N -1.12 -20.30 6.05 -187.49 -1.14 -21.44 16 8 C 0.12 2.30 6.36 86.38 0.55 2.85 16 9 C 0.12 3.48 5.82 86.38 0.50 3.98 16 10 N -0.73 -25.76 5.55 -467.47 -2.59 -28.35 16 11 C 0.59 28.29 7.76 86.32 0.67 28.96 16 12 O -0.60 -33.48 14.46 -4.55 -0.07 -33.54 16 13 C -0.47 -23.02 6.51 24.66 0.16 -22.86 16 14 S 0.04 1.40 22.25 -56.49 -1.26 0.15 16 15 C -0.17 -6.39 11.07 66.64 0.74 -5.65 16 16 C -0.17 -7.98 8.19 22.61 0.19 -7.79 16 17 C 0.09 4.70 5.40 -20.89 -0.11 4.59 16 18 C -0.47 -25.87 8.44 23.33 0.20 -25.67 16 19 H 0.08 4.85 6.13 -2.91 -0.02 4.84 16 20 C 0.00 0.12 5.24 85.37 0.45 0.57 16 21 N -0.79 -39.87 12.49 21.89 0.27 -39.60 16 22 Si 1.12 43.14 29.98 68.60 2.06 45.19 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.54 8.07 -2.39 -0.02 0.53 16 28 H 0.07 0.74 7.79 -2.38 -0.02 0.73 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 31 H 0.07 0.95 7.02 -2.39 -0.02 0.93 16 32 H 0.42 6.89 8.65 -96.75 -0.84 6.05 16 33 H 0.09 1.70 7.75 -2.39 -0.02 1.68 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.40 11.97 7.55 -92.71 -0.70 11.27 16 38 H 0.18 5.34 8.06 -2.91 -0.02 5.32 16 39 H 0.13 5.82 6.79 -2.91 -0.02 5.80 16 40 H 0.29 14.98 6.22 -92.71 -0.58 14.40 16 Total: -1.00 -75.45 363.83 -3.63 -79.08 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.24 Total: 31.36 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 6.01 Total: -16.72 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -5.51 Total: -105.56 kcal Atomic # 8 Polarization: -86.03 SS G_CDS: -4.34 Total: -90.37 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.06 Total: 45.19 kcal Atomic # 16 Polarization: 58.63 SS G_CDS: -1.60 Total: 57.03 kcal Total: -75.45 -3.63 -79.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.886 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds