Wall clock time and date at job start Wed Apr 1 2020 04:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76195 * 103.00209 * 2 1 4 4 C 1.39198 * 119.63129 * 180.02562 * 3 2 1 5 5 C 1.38194 * 119.17677 * 179.97438 * 4 3 2 6 6 C 1.39513 * 118.44393 * 359.97438 * 5 4 3 7 7 N 1.39932 * 120.40117 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00136 * 32.73614 * 7 6 5 9 9 O 1.21411 * 119.99781 * 5.27525 * 8 7 6 10 10 C 1.49188 * 119.99767 * 185.27106 * 8 7 6 11 11 O 1.21419 * 120.00153 * 359.97438 * 10 8 7 12 12 N 1.34774 * 119.99749 * 180.02562 * 10 8 7 13 13 C 1.40302 * 120.00221 * 179.97438 * 12 10 8 14 14 C 1.40717 * 126.09618 * 359.68765 * 13 12 10 15 15 N 1.30878 * 108.37731 * 179.81402 * 14 13 12 16 16 N 1.40066 * 108.43324 * 0.44602 * 15 14 13 17 17 C 1.37286 * 126.05687 * 179.69772 * 16 15 14 18 18 H 1.08004 * 120.00324 * 180.02562 * 17 16 15 19 19 C 1.39003 * 120.00262 * 0.02562 * 17 16 15 20 20 N 1.31285 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00387 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46876 * 60.00775 * 21 19 17 23 23 H 1.48501 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47417 * 300.00339 * 21 19 17 25 25 C 1.35786 * 126.10290 * 179.97438 * 13 12 10 26 26 C 1.38703 * 119.19486 * 0.02562 * 6 5 4 27 27 N 1.31937 * 120.75419 * 359.97438 * 26 6 5 28 28 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47271 * 299.99972 * 1 2 3 30 30 H 1.09002 * 109.47459 * 60.00676 * 1 2 3 31 31 H 1.07999 * 120.41317 * 0.24579 * 4 3 2 32 32 H 1.07992 * 120.77898 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99464 * 212.74085 * 7 6 5 34 34 H 0.97007 * 119.99882 * 359.97438 * 12 10 8 35 35 H 1.08001 * 125.81447 * 0.02562 * 14 13 12 36 36 H 0.97001 * 120.00421 * 179.97438 * 20 19 17 37 37 H 1.08001 * 126.24916 * 0.02562 * 25 13 12 38 38 H 1.07999 * 119.62442 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5441 2.1151 -0.0005 5 6 3.8444 3.4641 -0.0011 6 6 2.7913 4.3792 -0.0016 7 7 3.0485 5.7547 -0.0016 8 6 4.1377 6.2366 -0.6324 9 8 4.8432 5.4910 -1.2807 10 6 4.4762 7.6862 -0.5339 11 8 3.7703 8.4319 0.1140 12 7 5.5651 8.1683 -1.1651 13 6 5.8833 9.5316 -1.0730 14 6 5.1560 10.5067 -0.3657 15 7 5.7616 11.6581 -0.5094 16 7 6.8888 11.4677 -1.3187 17 6 7.7795 12.4383 -1.7050 18 1 8.6189 12.1815 -2.3341 19 6 7.6010 13.7518 -1.2864 20 7 6.5809 14.0639 -0.5211 21 14 8.8125 15.0727 -1.8125 22 1 8.8285 15.1676 -3.2944 23 1 8.4019 16.3786 -1.2369 24 1 10.1703 14.7220 -1.3243 25 6 6.9449 10.1465 -1.6550 26 6 1.4864 3.9090 -0.0010 27 7 1.2360 2.6137 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 4.3345 1.3792 -0.0050 32 1 4.8701 3.8019 -0.0019 33 1 2.4428 6.3613 0.4524 34 1 6.1289 7.5725 -1.6831 35 1 4.2537 10.3339 0.2021 36 1 6.4565 14.9804 -0.2287 37 1 7.6961 9.6759 -2.2720 38 1 0.6659 4.6113 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319988238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:14 Heat of formation + Delta-G solvation = 63.084832 kcal Electronic energy + Delta-G solvation = -25781.423236 eV Core-core repulsion = 21752.858359 eV Total energy + Delta-G solvation = -4028.564878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29520 -40.18871 -39.44869 -38.11466 -35.71239 -34.34480 -33.26045 -32.61351 -30.62997 -30.38195 -29.18681 -28.16472 -25.86704 -24.74626 -24.14429 -22.97642 -21.16284 -20.50779 -19.61194 -18.86677 -18.40962 -17.63036 -17.45665 -16.74260 -15.98738 -15.79372 -15.56426 -15.33458 -15.18836 -14.70909 -14.56350 -14.25160 -14.08796 -13.82762 -13.78056 -13.61920 -13.16704 -13.12540 -13.04220 -12.50383 -11.80892 -11.70011 -11.48011 -11.40551 -11.32106 -11.01117 -10.89708 -10.62443 -10.41268 -10.16507 -10.11280 -9.39328 -9.30249 -9.24105 -8.96191 -8.21287 -7.74963 -6.88318 -6.66813 -4.34957 0.46076 0.88509 1.12669 1.46035 1.90099 2.27083 2.87728 2.99740 3.03782 3.10477 3.36367 3.58183 3.60732 3.79339 4.17117 4.26724 4.41209 4.50001 4.62892 4.72388 4.81536 4.85605 4.89064 4.91888 5.22981 5.42559 5.44225 5.65991 5.79941 6.11088 6.25302 6.27171 6.61033 6.72852 6.80692 6.91124 7.08567 7.32497 7.49243 7.72661 7.91678 8.08466 8.32985 8.59529 9.22978 9.51350 10.28715 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.053592 B = 0.001627 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.343324 B =17209.314272 C =17618.572153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.081 6.081 3 C 0.100 3.900 4 C -0.126 4.126 5 C -0.062 4.062 6 C 0.097 3.903 7 N -0.643 5.643 8 C 0.518 3.482 9 O -0.507 6.507 10 C 0.484 3.516 11 O -0.519 6.519 12 N -0.577 5.577 13 C -0.074 4.074 14 C -0.024 4.024 15 N -0.261 5.261 16 N -0.136 5.136 17 C -0.322 4.322 18 H 0.119 0.881 19 C 0.047 3.953 20 N -0.766 5.766 21 Si 0.937 3.063 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.076 4.076 26 C 0.096 3.904 27 N -0.470 5.470 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.427 0.573 34 H 0.410 0.590 35 H 0.178 0.822 36 H 0.277 0.723 37 H 0.150 0.850 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 -21.928 0.917 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.157 5.843 3 C -0.149 4.149 4 C -0.152 4.152 5 C -0.091 4.091 6 C -0.002 4.002 7 N -0.291 5.291 8 C 0.300 3.700 9 O -0.380 6.380 10 C 0.265 3.735 11 O -0.396 6.396 12 N -0.219 5.219 13 C -0.180 4.180 14 C -0.200 4.200 15 N -0.091 5.091 16 N 0.098 4.902 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.392 5.392 21 Si 0.760 3.240 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.191 1.191 25 C -0.228 4.228 26 C -0.067 4.067 27 N -0.183 5.183 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.266 0.734 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.088 0.912 37 H 0.167 0.833 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.063 -21.744 1.330 23.229 hybrid contribution 0.576 1.075 -0.555 1.340 sum -7.487 -20.669 0.775 21.997 Atomic orbital electron populations 1.23445 0.93573 1.06054 1.06770 1.85507 1.07987 0.98926 1.91874 1.22961 0.92151 0.98287 1.01549 1.21566 0.95720 0.96213 1.01698 1.21584 1.00253 0.91672 0.95561 1.18739 0.94935 0.83827 1.02719 1.43109 1.26860 1.05770 1.53336 1.20582 0.80871 0.89761 0.78741 1.90763 1.49264 1.59565 1.38438 1.19282 0.83528 0.87129 0.83594 1.90689 1.50091 1.57731 1.41108 1.42106 1.24626 1.08322 1.46840 1.17228 1.02896 0.82501 1.15334 1.24152 1.02160 0.89608 1.04042 1.78286 0.97612 1.19346 1.13880 1.44575 1.15373 1.03745 1.26498 1.19910 1.06045 0.86998 1.32477 0.86382 1.25676 0.97281 0.98750 0.95413 1.70191 1.24333 1.20058 1.24618 0.85856 0.79781 0.78899 0.79438 1.19047 1.20039 1.19051 1.21299 1.03305 0.86460 1.11747 1.22538 0.94162 0.91992 0.97961 1.67995 1.34424 1.01691 1.14151 0.87958 0.89430 0.89424 0.83782 0.82880 0.73358 0.75484 0.80520 0.91201 0.83274 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 10.01 101.05 1.01 0.19 16 2 S -0.08 -0.68 22.55 -107.50 -2.42 -3.11 16 3 C 0.10 1.03 7.00 -16.94 -0.12 0.91 16 4 C -0.13 -1.24 9.83 -39.24 -0.39 -1.62 16 5 C -0.06 -0.67 8.76 -39.12 -0.34 -1.01 16 6 C 0.10 1.04 6.31 -83.51 -0.53 0.52 16 7 N -0.64 -7.08 5.34 -10.20 -0.05 -7.14 16 8 C 0.52 7.07 7.64 -11.71 -0.09 6.98 16 9 O -0.51 -7.43 14.16 5.44 0.08 -7.35 16 10 C 0.48 8.04 7.85 -11.71 -0.09 7.94 16 11 O -0.52 -9.71 13.63 5.44 0.07 -9.63 16 12 N -0.58 -10.12 5.45 -10.49 -0.06 -10.18 16 13 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 14 C -0.02 -0.60 10.84 -17.02 -0.18 -0.78 16 15 N -0.26 -7.27 10.39 30.81 0.32 -6.95 16 16 N -0.14 -3.58 3.73 -11.40 -0.04 -3.63 16 17 C -0.32 -8.21 10.25 -14.83 -0.15 -8.36 16 18 H 0.12 2.67 7.83 -52.48 -0.41 2.26 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 20 N -0.77 -20.65 11.81 55.50 0.66 -20.00 16 21 Si 0.94 18.24 29.55 -169.99 -5.02 13.22 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 C -0.08 -1.73 11.50 -16.38 -0.19 -1.92 16 26 C 0.10 0.94 11.11 -17.33 -0.19 0.75 16 27 N -0.47 -5.00 9.41 -11.95 -0.11 -5.11 16 28 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.15 1.70 6.47 -52.49 -0.34 1.36 16 33 H 0.43 4.01 8.29 -40.82 -0.34 3.67 16 34 H 0.41 6.09 8.29 -40.82 -0.34 5.75 16 35 H 0.18 4.25 5.92 -52.49 -0.31 3.94 16 36 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -32.02 354.54 -6.59 -38.61 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -3.41 Total: 13.46 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.94 Total: 2.46 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.71 Total: -53.01 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.15 Total: -16.98 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.42 Total: -3.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.02 -6.59 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319988238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.700 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds