Wall clock time and date at job start Wed Apr 1 2020 04:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76195 * 103.00209 * 2 1 4 4 C 1.39198 * 119.63129 * 180.02562 * 3 2 1 5 5 C 1.38194 * 119.17677 * 179.97438 * 4 3 2 6 6 C 1.39513 * 118.44393 * 359.97438 * 5 4 3 7 7 N 1.39932 * 120.40117 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00136 * 32.73614 * 7 6 5 9 9 O 1.21411 * 119.99781 * 5.27525 * 8 7 6 10 10 C 1.49188 * 119.99767 * 185.27106 * 8 7 6 11 11 O 1.21419 * 120.00153 * 359.97438 * 10 8 7 12 12 N 1.34774 * 119.99749 * 180.02562 * 10 8 7 13 13 C 1.40302 * 120.00221 * 179.97438 * 12 10 8 14 14 C 1.40717 * 126.09618 * 359.68765 * 13 12 10 15 15 N 1.30878 * 108.37731 * 179.81402 * 14 13 12 16 16 N 1.40066 * 108.43324 * 0.44602 * 15 14 13 17 17 C 1.37286 * 126.05687 * 179.69772 * 16 15 14 18 18 H 1.08004 * 120.00324 * 180.02562 * 17 16 15 19 19 C 1.39003 * 120.00262 * 0.02562 * 17 16 15 20 20 N 1.31285 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00387 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46876 * 60.00775 * 21 19 17 23 23 H 1.48501 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47417 * 300.00339 * 21 19 17 25 25 C 1.35786 * 126.10290 * 179.97438 * 13 12 10 26 26 C 1.38703 * 119.19486 * 0.02562 * 6 5 4 27 27 N 1.31937 * 120.75419 * 359.97438 * 26 6 5 28 28 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47271 * 299.99972 * 1 2 3 30 30 H 1.09002 * 109.47459 * 60.00676 * 1 2 3 31 31 H 1.07999 * 120.41317 * 0.24579 * 4 3 2 32 32 H 1.07992 * 120.77898 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99464 * 212.74085 * 7 6 5 34 34 H 0.97007 * 119.99882 * 359.97438 * 12 10 8 35 35 H 1.08001 * 125.81447 * 0.02562 * 14 13 12 36 36 H 0.97001 * 120.00421 * 179.97438 * 20 19 17 37 37 H 1.08001 * 126.24916 * 0.02562 * 25 13 12 38 38 H 1.07999 * 119.62442 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5441 2.1151 -0.0005 5 6 3.8444 3.4641 -0.0011 6 6 2.7913 4.3792 -0.0016 7 7 3.0485 5.7547 -0.0016 8 6 4.1377 6.2366 -0.6324 9 8 4.8432 5.4910 -1.2807 10 6 4.4762 7.6862 -0.5339 11 8 3.7703 8.4319 0.1140 12 7 5.5651 8.1683 -1.1651 13 6 5.8833 9.5316 -1.0730 14 6 5.1560 10.5067 -0.3657 15 7 5.7616 11.6581 -0.5094 16 7 6.8888 11.4677 -1.3187 17 6 7.7795 12.4383 -1.7050 18 1 8.6189 12.1815 -2.3341 19 6 7.6010 13.7518 -1.2864 20 7 6.5809 14.0639 -0.5211 21 14 8.8125 15.0727 -1.8125 22 1 8.8285 15.1676 -3.2944 23 1 8.4019 16.3786 -1.2369 24 1 10.1703 14.7220 -1.3243 25 6 6.9449 10.1465 -1.6550 26 6 1.4864 3.9090 -0.0010 27 7 1.2360 2.6137 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 4.3345 1.3792 -0.0050 32 1 4.8701 3.8019 -0.0019 33 1 2.4428 6.3613 0.4524 34 1 6.1289 7.5725 -1.6831 35 1 4.2537 10.3339 0.2021 36 1 6.4565 14.9804 -0.2287 37 1 7.6961 9.6759 -2.2720 38 1 0.6659 4.6113 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319988238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:13 Heat of formation + Delta-G solvation = 40.451788 kcal Electronic energy + Delta-G solvation = -25782.404679 eV Core-core repulsion = 21752.858359 eV Total energy + Delta-G solvation = -4029.546320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39311 -41.64234 -40.74172 -39.46273 -36.80637 -35.87089 -34.97821 -33.39821 -32.30962 -31.45631 -29.92863 -29.67713 -27.37428 -26.16819 -24.99751 -24.03408 -22.91149 -21.81242 -21.28148 -20.09777 -19.30535 -19.11430 -18.55909 -17.72545 -17.43250 -17.18111 -16.96760 -16.69076 -16.08696 -15.81385 -15.61674 -15.39407 -15.36451 -15.08767 -14.86418 -14.83670 -14.50976 -14.20972 -13.79124 -13.51145 -13.39923 -13.16752 -12.97121 -12.89103 -12.58969 -12.36087 -12.13394 -11.99395 -11.52985 -11.06836 -11.06047 -10.92794 -10.86797 -10.57130 -10.15157 -10.13043 -8.64941 -8.49146 -8.45309 -6.27284 -0.42671 0.10038 0.30401 0.45031 1.08627 1.29666 1.32230 1.41714 1.57267 1.69873 1.95361 2.10854 2.44930 2.46380 2.57906 2.83614 3.07503 3.36292 3.48867 3.71838 3.86605 3.92767 4.35507 4.38143 4.38847 4.50181 4.51601 4.61434 4.85115 4.93906 4.95144 4.97513 4.97944 5.17933 5.28382 5.43699 5.78050 5.91735 6.20195 6.38083 6.53500 6.59823 6.68918 6.99006 7.40223 7.62160 8.49640 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.053592 B = 0.001627 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.343324 B =17209.314272 C =17618.572153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.082 6.082 3 C 0.089 3.911 4 C -0.130 4.130 5 C -0.069 4.069 6 C 0.081 3.919 7 N -0.626 5.626 8 C 0.530 3.470 9 O -0.514 6.514 10 C 0.491 3.509 11 O -0.538 6.538 12 N -0.577 5.577 13 C -0.059 4.059 14 C -0.046 4.046 15 N -0.309 5.309 16 N -0.162 5.162 17 C -0.355 4.355 18 H 0.142 0.858 19 C -0.003 4.003 20 N -0.820 5.820 21 Si 1.018 2.982 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.254 1.254 25 C -0.073 4.073 26 C 0.102 3.898 27 N -0.482 5.482 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.435 0.565 34 H 0.425 0.575 35 H 0.178 0.822 36 H 0.278 0.722 37 H 0.189 0.811 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -23.886 0.093 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.157 5.843 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.098 4.098 6 C -0.018 4.018 7 N -0.274 5.274 8 C 0.312 3.688 9 O -0.389 6.389 10 C 0.272 3.728 11 O -0.416 6.416 12 N -0.222 5.222 13 C -0.165 4.165 14 C -0.221 4.221 15 N -0.140 5.140 16 N 0.070 4.930 17 C -0.486 4.486 18 H 0.159 0.841 19 C -0.216 4.216 20 N -0.448 5.448 21 Si 0.837 3.163 22 H -0.178 1.178 23 H -0.202 1.202 24 H -0.178 1.178 25 C -0.224 4.224 26 C -0.060 4.060 27 N -0.194 5.194 28 H 0.144 0.856 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.263 0.737 35 H 0.194 0.806 36 H 0.088 0.912 37 H 0.206 0.794 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.817 -23.774 0.505 25.031 hybrid contribution 0.330 1.369 -0.258 1.432 sum -7.487 -22.405 0.247 23.624 Atomic orbital electron populations 1.23528 0.91764 1.07549 1.06542 1.85521 1.09967 0.97465 1.91368 1.23336 0.92444 0.99313 1.00825 1.21763 0.96207 0.96214 1.01376 1.21651 1.00144 0.92278 0.95710 1.18818 0.95524 0.83180 1.04285 1.42919 1.25837 1.06317 1.52340 1.19831 0.81715 0.87939 0.79345 1.90774 1.49885 1.59101 1.39155 1.19832 0.82473 0.88407 0.82050 1.90684 1.50528 1.58855 1.41491 1.42017 1.25562 1.06753 1.47825 1.17251 1.01746 0.84097 1.13425 1.24278 1.02644 0.90116 1.05065 1.78176 0.99130 1.21159 1.15553 1.44832 1.15583 1.05186 1.27417 1.20625 1.06871 0.87649 1.33421 0.84071 1.26858 0.98934 1.01019 0.94775 1.70362 1.26959 1.20598 1.26832 0.84658 0.77194 0.75059 0.79369 1.17795 1.20233 1.17789 1.22013 1.03822 0.85497 1.11049 1.22912 0.94428 0.92211 0.96487 1.68075 1.34609 1.01987 1.14765 0.85614 0.89528 0.89702 0.82085 0.83345 0.72406 0.73713 0.80560 0.91219 0.79447 0.79388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 10.01 113.37 1.14 -0.18 16 2 S -0.08 -1.23 22.55 -56.49 -1.27 -2.50 16 3 C 0.09 1.70 7.00 84.83 0.59 2.29 16 4 C -0.13 -2.36 9.83 22.49 0.22 -2.14 16 5 C -0.07 -1.40 8.76 22.57 0.20 -1.20 16 6 C 0.08 1.61 6.31 38.27 0.24 1.85 16 7 N -0.63 -12.83 5.34 -304.53 -1.63 -14.46 16 8 C 0.53 13.72 7.64 87.19 0.67 14.39 16 9 O -0.51 -14.24 14.16 -3.44 -0.05 -14.29 16 10 C 0.49 15.84 7.85 87.19 0.68 16.53 16 11 O -0.54 -19.98 13.63 -3.46 -0.05 -20.03 16 12 N -0.58 -19.61 5.45 -305.43 -1.66 -21.27 16 13 C -0.06 -2.58 6.90 37.82 0.26 -2.32 16 14 C -0.05 -2.33 10.84 85.44 0.93 -1.40 16 15 N -0.31 -17.84 10.39 -56.44 -0.59 -18.42 16 16 N -0.16 -8.71 3.73 -189.98 -0.71 -9.42 16 17 C -0.35 -18.20 10.25 84.02 0.86 -17.34 16 18 H 0.14 6.25 7.83 -2.91 -0.02 6.23 16 19 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 20 N -0.82 -45.85 11.81 21.66 0.26 -45.59 16 21 Si 1.02 37.36 29.55 68.60 2.03 39.39 16 22 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 23 H -0.28 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 25 C -0.07 -3.25 11.50 83.41 0.96 -2.29 16 26 C 0.10 1.79 11.11 84.79 0.94 2.73 16 27 N -0.48 -9.38 9.41 -191.73 -1.80 -11.18 16 28 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.15 3.13 6.47 -2.91 -0.02 3.12 16 33 H 0.44 7.51 8.29 -92.71 -0.77 6.75 16 34 H 0.42 11.86 8.29 -92.70 -0.77 11.09 16 35 H 0.18 8.79 5.92 -2.91 -0.02 8.78 16 36 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.19 6.62 8.06 -2.91 -0.02 6.60 16 38 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.21 354.54 2.30 -68.91 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.37 Total: 37.67 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 8.16 Total: 11.21 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -6.14 Total: -120.35 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.10 Total: -34.31 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -1.27 Total: -2.50 kcal Total: -71.21 2.30 -68.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319988238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.357 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds