Wall clock time and date at job start Wed Apr 1 2020 04:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00393 * 2 1 4 4 O 1.21668 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.46949 * 120.00295 * 179.97438 * 3 2 1 6 6 N 1.34567 * 125.96420 * 0.16415 * 5 3 2 7 7 N 1.28667 * 109.73984 * 180.30162 * 6 5 3 8 8 N 1.40149 * 108.87970 * 359.72513 * 7 6 5 9 9 H 0.96995 * 126.55681 * 179.97438 * 8 7 6 10 10 C 1.35353 * 106.88648 * 359.97438 * 8 7 6 11 11 N 1.38395 * 126.78802 * 180.02562 * 10 8 7 12 12 C 1.34784 * 120.00136 * 0.02562 * 11 10 8 13 13 O 1.21547 * 119.99581 * 0.02562 * 12 11 10 14 14 C 1.47798 * 120.00140 * 180.02562 * 12 11 10 15 15 C 1.39695 * 120.10773 * 359.97438 * 14 12 11 16 16 C 1.38030 * 120.04073 * 180.02562 * 15 14 12 17 17 C 1.38186 * 120.24580 * 359.71749 * 16 15 14 18 18 C 1.39188 * 120.20504 * 0.55988 * 17 16 15 19 19 S 1.76194 * 120.01963 * 179.71430 * 18 17 16 20 20 C 1.76196 * 100.00177 * 265.25514 * 19 18 17 21 21 H 1.07999 * 120.00447 * 5.11739 * 20 19 18 22 22 C 1.38736 * 119.99972 * 185.12238 * 20 19 18 23 23 N 1.31631 * 119.99738 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00158 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47267 * 89.99592 * 24 22 20 26 26 H 1.48502 * 109.47131 * 209.99961 * 24 22 20 27 27 H 1.48499 * 109.47136 * 329.99763 * 24 22 20 28 28 C 1.38875 * 119.95888 * 359.44616 * 18 17 16 29 29 H 1.09004 * 109.47425 * 300.00575 * 1 2 3 30 30 H 1.08999 * 109.46908 * 60.00187 * 1 2 3 31 31 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99970 * 179.97438 * 2 1 3 33 33 H 0.97005 * 120.00383 * 180.02562 * 11 10 8 34 34 H 1.08002 * 119.98362 * 359.97438 * 15 14 12 35 35 H 1.07996 * 119.88179 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.90010 * 180.27643 * 17 16 15 37 37 H 0.96995 * 120.00040 * 180.02562 * 23 22 20 38 38 H 1.07996 * 120.11784 * 180.25400 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5307 2.2209 -0.0005 5 6 3.6084 1.1671 0.0006 6 7 4.3987 0.0779 -0.0020 7 7 5.6341 0.4374 0.0058 8 7 5.6991 1.8374 0.0078 9 1 6.5041 2.3784 0.0135 10 6 4.4235 2.2902 0.0001 11 7 4.0133 3.6119 -0.0016 12 6 4.9283 4.6016 0.0043 13 8 6.1137 4.3332 0.0106 14 6 4.4901 6.0131 0.0031 15 6 3.1283 6.3241 -0.0047 16 6 2.7206 7.6429 -0.0064 17 6 3.6555 8.6604 0.0055 18 6 5.0151 8.3623 0.0076 19 16 6.2029 9.6636 0.0152 20 6 6.5192 9.7993 -1.7128 21 1 5.9466 9.2110 -2.4146 22 6 7.5040 10.6619 -2.1721 23 7 7.7406 10.7628 -3.4631 24 14 8.4951 11.6788 -0.9586 25 1 9.7021 10.9187 -0.5454 26 1 8.9079 12.9524 -1.6011 27 1 7.6631 11.9737 0.2356 28 6 5.4347 7.0384 0.0092 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9500 -0.8401 0.0004 33 1 3.0672 3.8262 -0.0070 34 1 2.3938 5.5323 -0.0103 35 1 1.6671 7.8804 -0.0120 36 1 3.3303 9.6902 0.0087 37 1 8.4293 11.3656 -3.7842 38 1 6.4889 6.8041 0.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361496932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:01 Heat of formation + Delta-G solvation = 48.368737 kcal Electronic energy + Delta-G solvation = -26343.007114 eV Core-core repulsion = 22313.804098 eV Total energy + Delta-G solvation = -4029.203016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.70936 -40.56490 -39.63115 -38.33992 -35.94548 -34.88491 -33.29349 -32.59287 -31.60698 -30.89979 -30.21785 -27.33810 -25.78000 -24.91355 -23.71699 -23.17798 -22.45614 -21.12519 -21.05918 -19.19953 -18.70261 -17.78175 -17.43483 -16.66797 -16.58102 -16.17737 -15.91287 -15.59821 -15.52286 -15.08996 -14.97418 -14.70274 -14.35054 -14.27944 -13.68536 -13.24367 -13.02262 -12.74154 -12.69134 -12.65311 -12.14290 -12.04652 -11.84674 -11.60012 -11.40151 -11.18536 -10.84814 -10.76223 -10.75397 -10.51370 -10.00072 -9.59007 -9.39837 -9.17742 -9.04456 -8.82090 -8.33617 -7.25908 -6.41989 -4.19199 0.42497 1.03737 1.31144 1.38097 1.64388 2.46684 2.56339 2.77740 2.85351 2.94338 3.19693 3.30830 3.39222 3.78492 3.89816 4.16310 4.17201 4.25786 4.54416 4.76714 4.83174 4.87901 4.93981 4.97726 5.08604 5.13523 5.38985 5.42899 5.46198 5.55161 5.65421 5.94321 5.94968 6.20200 6.36363 6.56670 6.61370 6.67909 6.87413 7.00616 7.35660 7.60212 7.78121 7.81872 8.34744 9.01376 10.67261 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.002389 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.113559 B =11718.775698 C =12649.179504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.718 5.718 3 C 0.615 3.385 4 O -0.549 6.549 5 C -0.150 4.150 6 N -0.184 5.184 7 N -0.055 5.055 8 N -0.456 5.456 9 H 0.462 0.538 10 C 0.380 3.620 11 N -0.628 5.628 12 C 0.574 3.426 13 O -0.519 6.519 14 C -0.162 4.162 15 C -0.077 4.077 16 C -0.136 4.136 17 C -0.039 4.039 18 C -0.087 4.087 19 S -0.106 6.106 20 C -0.513 4.513 21 H 0.092 0.908 22 C 0.096 3.904 23 N -0.873 5.873 24 Si 0.858 3.142 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.239 1.239 28 C -0.007 4.007 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.412 0.588 33 H 0.443 0.557 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.273 0.727 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -18.279 8.484 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.368 5.368 3 C 0.400 3.600 4 O -0.427 6.427 5 C -0.293 4.293 6 N -0.059 5.059 7 N -0.038 5.038 8 N -0.181 5.181 9 H 0.317 0.683 10 C 0.142 3.858 11 N -0.282 5.282 12 C 0.366 3.634 13 O -0.394 6.394 14 C -0.167 4.167 15 C -0.096 4.096 16 C -0.155 4.155 17 C -0.060 4.060 18 C -0.198 4.198 19 S 0.128 5.872 20 C -0.660 4.660 21 H 0.110 0.890 22 C -0.114 4.114 23 N -0.509 5.509 24 Si 0.682 3.318 25 H -0.190 1.190 26 H -0.197 1.197 27 H -0.163 1.163 28 C -0.028 4.028 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.247 0.753 33 H 0.289 0.711 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.183 -18.213 9.196 23.764 hybrid contribution -0.184 0.680 -0.849 1.103 sum -12.367 -17.533 8.347 23.023 Atomic orbital electron populations 1.21612 0.78657 1.02627 1.02690 1.45449 1.07915 1.08587 1.74894 1.16460 0.83710 0.84204 0.75591 1.90742 1.68665 1.31164 1.52100 1.20925 0.95031 0.87329 1.26052 1.74506 0.97771 1.24882 1.08698 1.81916 1.11539 0.86059 1.24286 1.48509 1.07210 1.08474 1.53949 0.68320 1.18722 0.86175 0.86204 0.94743 1.43274 1.13636 1.00489 1.70770 1.18896 0.84756 0.85936 0.73795 1.90606 1.16791 1.83618 1.48402 1.19372 0.94819 0.90154 1.12341 1.21290 0.93742 0.97486 0.97105 1.21105 1.00008 0.92082 1.02335 1.22039 0.92003 1.00088 0.91826 1.22247 0.97771 0.97333 1.02450 1.83150 1.50732 1.38905 1.14448 1.22232 1.25036 1.31041 0.87675 0.89023 1.24750 0.95609 0.95776 0.95224 1.69921 1.31838 1.36496 1.12656 0.86738 0.82076 0.80585 0.82384 1.18998 1.19682 1.16322 1.21923 0.99921 0.90641 0.90341 0.91846 0.91810 0.90305 0.75346 0.71102 0.85620 0.84968 0.84430 0.91690 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.84 0.64 1.11 16 2 N -0.72 -5.36 5.71 -68.34 -0.39 -5.75 16 3 C 0.61 6.52 7.80 -12.73 -0.10 6.42 16 4 O -0.55 -6.69 15.09 5.22 0.08 -6.61 16 5 C -0.15 -1.73 7.06 -82.94 -0.59 -2.32 16 6 N -0.18 -2.15 12.03 33.15 0.40 -1.75 16 7 N -0.05 -0.68 13.85 60.35 0.84 0.15 16 8 N -0.46 -5.57 7.04 31.46 0.22 -5.34 16 9 H 0.46 5.51 6.55 -182.56 -1.20 4.31 16 10 C 0.38 4.64 7.76 -153.16 -1.19 3.45 16 11 N -0.63 -7.39 5.31 -11.94 -0.06 -7.45 16 12 C 0.57 8.00 7.73 -12.35 -0.10 7.90 16 13 O -0.52 -8.14 13.93 5.32 0.07 -8.06 16 14 C -0.16 -2.38 5.87 -105.01 -0.62 -3.00 16 15 C -0.08 -0.95 9.54 -39.11 -0.37 -1.32 16 16 C -0.14 -1.71 10.02 -39.68 -0.40 -2.11 16 17 C -0.04 -0.61 9.79 -39.25 -0.38 -0.99 16 18 C -0.09 -1.67 5.45 -38.99 -0.21 -1.88 16 19 S -0.11 -2.43 19.38 -107.50 -2.08 -4.51 16 20 C -0.51 -14.11 10.01 30.92 0.31 -13.80 16 21 H 0.09 2.74 8.02 -52.49 -0.42 2.32 16 22 C 0.10 2.67 5.50 -17.45 -0.10 2.58 16 23 N -0.87 -25.54 13.97 55.49 0.78 -24.77 16 24 Si 0.86 20.33 27.74 -169.99 -4.71 15.62 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.24 -5.46 6.74 56.52 0.38 -5.08 16 28 C -0.01 -0.12 9.34 -38.91 -0.36 -0.48 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.41 2.45 8.51 -40.82 -0.35 2.10 16 33 H 0.44 4.67 4.87 -40.82 -0.20 4.47 16 34 H 0.13 1.16 6.40 -52.49 -0.34 0.83 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.14 2.70 7.65 -52.49 -0.40 2.30 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -31.75 352.41 -7.19 -38.94 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.17 Total: 8.68 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.46 Total: -4.45 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 1.78 Total: -44.92 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.15 Total: -14.67 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.71 Total: 15.62 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.08 Total: -4.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.75 -7.19 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361496932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.309 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds