Wall clock time and date at job start Wed Apr 1 2020 04:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00393 * 2 1 4 4 O 1.21668 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.46949 * 120.00295 * 179.97438 * 3 2 1 6 6 N 1.34567 * 125.96420 * 0.16415 * 5 3 2 7 7 N 1.28667 * 109.73984 * 180.30162 * 6 5 3 8 8 N 1.40149 * 108.87970 * 359.72513 * 7 6 5 9 9 H 0.96995 * 126.55681 * 179.97438 * 8 7 6 10 10 C 1.35353 * 106.88648 * 359.97438 * 8 7 6 11 11 N 1.38395 * 126.78802 * 180.02562 * 10 8 7 12 12 C 1.34784 * 120.00136 * 0.02562 * 11 10 8 13 13 O 1.21547 * 119.99581 * 0.02562 * 12 11 10 14 14 C 1.47798 * 120.00140 * 180.02562 * 12 11 10 15 15 C 1.39695 * 120.10773 * 359.97438 * 14 12 11 16 16 C 1.38030 * 120.04073 * 180.02562 * 15 14 12 17 17 C 1.38186 * 120.24580 * 359.71749 * 16 15 14 18 18 C 1.39188 * 120.20504 * 0.55988 * 17 16 15 19 19 S 1.76194 * 120.01963 * 179.71430 * 18 17 16 20 20 C 1.76196 * 100.00177 * 265.25514 * 19 18 17 21 21 H 1.07999 * 120.00447 * 5.11739 * 20 19 18 22 22 C 1.38736 * 119.99972 * 185.12238 * 20 19 18 23 23 N 1.31631 * 119.99738 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00158 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47267 * 89.99592 * 24 22 20 26 26 H 1.48502 * 109.47131 * 209.99961 * 24 22 20 27 27 H 1.48499 * 109.47136 * 329.99763 * 24 22 20 28 28 C 1.38875 * 119.95888 * 359.44616 * 18 17 16 29 29 H 1.09004 * 109.47425 * 300.00575 * 1 2 3 30 30 H 1.08999 * 109.46908 * 60.00187 * 1 2 3 31 31 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99970 * 179.97438 * 2 1 3 33 33 H 0.97005 * 120.00383 * 180.02562 * 11 10 8 34 34 H 1.08002 * 119.98362 * 359.97438 * 15 14 12 35 35 H 1.07996 * 119.88179 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.90010 * 180.27643 * 17 16 15 37 37 H 0.96995 * 120.00040 * 180.02562 * 23 22 20 38 38 H 1.07996 * 120.11784 * 180.25400 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5307 2.2209 -0.0005 5 6 3.6084 1.1671 0.0006 6 7 4.3987 0.0779 -0.0020 7 7 5.6341 0.4374 0.0058 8 7 5.6991 1.8374 0.0078 9 1 6.5041 2.3784 0.0135 10 6 4.4235 2.2902 0.0001 11 7 4.0133 3.6119 -0.0016 12 6 4.9283 4.6016 0.0043 13 8 6.1137 4.3332 0.0106 14 6 4.4901 6.0131 0.0031 15 6 3.1283 6.3241 -0.0047 16 6 2.7206 7.6429 -0.0064 17 6 3.6555 8.6604 0.0055 18 6 5.0151 8.3623 0.0076 19 16 6.2029 9.6636 0.0152 20 6 6.5192 9.7993 -1.7128 21 1 5.9466 9.2110 -2.4146 22 6 7.5040 10.6619 -2.1721 23 7 7.7406 10.7628 -3.4631 24 14 8.4951 11.6788 -0.9586 25 1 9.7021 10.9187 -0.5454 26 1 8.9079 12.9524 -1.6011 27 1 7.6631 11.9737 0.2356 28 6 5.4347 7.0384 0.0092 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9500 -0.8401 0.0004 33 1 3.0672 3.8262 -0.0070 34 1 2.3938 5.5323 -0.0103 35 1 1.6671 7.8804 -0.0120 36 1 3.3303 9.6902 0.0087 37 1 8.4293 11.3656 -3.7842 38 1 6.4889 6.8041 0.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361496932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:00 Heat of formation + Delta-G solvation = 24.558854 kcal Electronic energy + Delta-G solvation = -26344.039588 eV Core-core repulsion = 22313.804098 eV Total energy + Delta-G solvation = -4030.235490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.66995 -41.67325 -40.41086 -39.53014 -36.97235 -35.59565 -34.72790 -34.25363 -32.72468 -32.10938 -31.21684 -27.96542 -27.92649 -25.98914 -24.66595 -24.22234 -23.55909 -22.22811 -21.92356 -20.19914 -20.06010 -19.22099 -18.62223 -17.63096 -17.45675 -17.32127 -17.15270 -16.86176 -16.68840 -16.47067 -15.94184 -15.82806 -15.65220 -15.06611 -14.99205 -14.82737 -14.09079 -13.82756 -13.69823 -13.58825 -13.24911 -13.09034 -13.06801 -13.06085 -12.87582 -12.76232 -12.36521 -11.91156 -11.85793 -11.72337 -11.42598 -11.23464 -11.03107 -10.29423 -10.15943 -9.87229 -9.76892 -9.16806 -8.54999 -6.29627 -0.67835 -0.03921 0.13156 0.40503 0.67086 1.04361 1.30690 1.35490 1.43097 1.55506 1.69699 2.08154 2.13170 2.19964 2.47145 2.83373 2.88037 2.97437 3.15323 3.38991 3.59908 3.80142 3.88589 4.09710 4.22548 4.29547 4.44801 4.49510 4.60741 4.72568 4.80400 4.99739 5.04047 5.20526 5.31666 5.34757 5.63558 5.63911 5.67532 5.74843 6.09727 6.28227 6.33442 6.70263 6.87555 7.04375 8.58334 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.002389 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.113559 B =11718.775698 C =12649.179504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.706 5.706 3 C 0.609 3.391 4 O -0.566 6.566 5 C -0.142 4.142 6 N -0.180 5.180 7 N -0.067 5.067 8 N -0.456 5.456 9 H 0.461 0.539 10 C 0.366 3.634 11 N -0.612 5.612 12 C 0.577 3.423 13 O -0.542 6.542 14 C -0.163 4.163 15 C -0.055 4.055 16 C -0.119 4.119 17 C -0.044 4.044 18 C -0.121 4.121 19 S -0.108 6.108 20 C -0.524 4.524 21 H 0.048 0.952 22 C 0.041 3.959 23 N -0.919 5.919 24 Si 0.920 3.080 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.225 1.225 28 C -0.026 4.026 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.419 0.581 33 H 0.450 0.550 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.146 0.854 37 H 0.278 0.722 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 -19.586 9.960 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.355 5.355 3 C 0.394 3.606 4 O -0.446 6.446 5 C -0.286 4.286 6 N -0.055 5.055 7 N -0.049 5.049 8 N -0.181 5.181 9 H 0.316 0.684 10 C 0.128 3.872 11 N -0.266 5.266 12 C 0.369 3.631 13 O -0.418 6.418 14 C -0.168 4.168 15 C -0.074 4.074 16 C -0.138 4.138 17 C -0.064 4.064 18 C -0.232 4.232 19 S 0.126 5.874 20 C -0.671 4.671 21 H 0.067 0.933 22 C -0.165 4.165 23 N -0.557 5.557 24 Si 0.741 3.259 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.149 1.149 28 C -0.048 4.048 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.256 0.744 33 H 0.298 0.702 34 H 0.185 0.815 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.945 -19.577 10.681 26.846 hybrid contribution 0.447 0.831 -1.323 1.625 sum -14.499 -18.746 9.357 25.479 Atomic orbital electron populations 1.21826 0.77009 1.04762 1.02364 1.45495 1.08959 1.07985 1.73098 1.16451 0.83226 0.84906 0.76047 1.90719 1.68686 1.31876 1.53273 1.21192 0.95706 0.86857 1.24812 1.74497 0.97570 1.24850 1.08552 1.81921 1.11957 0.86150 1.24915 1.48526 1.07408 1.08460 1.53702 0.68363 1.18881 0.86317 0.86428 0.95607 1.43005 1.13475 0.99962 1.70156 1.18763 0.84653 0.86040 0.73659 1.90605 1.17875 1.83896 1.49456 1.19409 0.95518 0.89786 1.12054 1.21779 0.93100 0.98741 0.93756 1.21569 1.01539 0.91034 0.99701 1.22209 0.90993 1.01729 0.91515 1.22107 0.98209 0.96297 1.06576 1.82707 1.52837 1.41569 1.10263 1.22387 1.24308 1.30053 0.90388 0.93349 1.25722 0.96729 0.96976 0.97029 1.70032 1.33010 1.37864 1.14763 0.85789 0.80479 0.79160 0.80454 1.18666 1.18437 1.14852 1.21694 0.99672 0.91265 0.92172 0.92037 0.92191 0.87060 0.74420 0.70206 0.81501 0.80308 0.83660 0.91289 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.70 127.77 1.37 2.00 16 2 N -0.71 -8.68 5.71 -488.34 -2.79 -11.47 16 3 C 0.61 11.51 7.80 86.53 0.67 12.18 16 4 O -0.57 -12.29 15.09 -4.25 -0.06 -12.36 16 5 C -0.14 -3.03 7.06 41.13 0.29 -2.74 16 6 N -0.18 -3.97 12.03 -49.03 -0.59 -4.56 16 7 N -0.07 -1.61 13.85 37.02 0.51 -1.09 16 8 N -0.46 -10.92 7.04 -54.37 -0.38 -11.30 16 9 H 0.46 11.11 6.55 -213.29 -1.40 9.72 16 10 C 0.37 8.47 7.76 132.28 1.03 9.50 16 11 N -0.61 -13.33 5.31 -309.97 -1.65 -14.98 16 12 C 0.58 15.65 7.73 86.77 0.67 16.32 16 13 O -0.54 -17.25 13.93 -3.86 -0.05 -17.31 16 14 C -0.16 -4.61 5.87 -20.11 -0.12 -4.73 16 15 C -0.06 -1.16 9.54 22.57 0.22 -0.95 16 16 C -0.12 -2.54 10.02 22.21 0.22 -2.32 16 17 C -0.04 -1.32 9.79 22.49 0.22 -1.10 16 18 C -0.12 -4.69 5.45 22.65 0.12 -4.56 16 19 S -0.11 -5.04 19.38 -56.49 -1.09 -6.14 16 20 C -0.52 -30.19 10.01 67.94 0.68 -29.51 16 21 H 0.05 3.09 8.02 -2.91 -0.02 3.07 16 22 C 0.04 2.34 5.50 84.84 0.47 2.81 16 23 N -0.92 -55.84 13.97 21.64 0.30 -55.54 16 24 Si 0.92 42.66 27.74 68.60 1.90 44.56 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.23 -9.84 6.74 99.48 0.67 -9.17 16 28 C -0.03 -0.96 9.34 22.71 0.21 -0.75 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.42 3.87 8.51 -92.70 -0.79 3.09 16 33 H 0.45 8.19 4.87 -92.70 -0.45 7.74 16 34 H 0.17 2.19 6.40 -2.91 -0.02 2.17 16 35 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.12 4.85 7.65 -2.91 -0.02 4.83 16 Total: -1.00 -72.95 352.41 0.66 -72.30 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -1.49 Total: 21.72 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 6.05 Total: -3.85 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -4.59 Total: -98.93 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.12 Total: -29.66 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.90 Total: 44.56 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.09 Total: -6.14 kcal Total: -72.95 0.66 -72.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361496932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.854 kcal (2) G-P(sol) polarization free energy of solvation -72.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds